Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04238 and RBAM_026060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:39
# Commandline: needle
# -asequence dna-align/BSNT_04238___gapB.1.9828.seq
# -bsequence dna-align/RBAM_026060___gapB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04238___gapB-RBAM_026060___gapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04238___gapB-RBAM_026060___gapB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04238___gapB
# 2: RBAM_026060___gapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1031
# Identity: 827/1031 (80.2%)
# Similarity: 827/1031 (80.2%)
# Gaps: 16/1031 ( 1.6%)
# Score: 3308.5
#
#
#=======================================
BSNT_04238___ 1 ATGAAGGTAAAAGTAGCGATCAACGGGTTTGGAAGAATCGGAAGAATGGT 50
|||||||||||||||||.||||||||||||||||||||||||||||||||
RBAM_026060__ 1 ATGAAGGTAAAAGTAGCAATCAACGGGTTTGGAAGAATCGGAAGAATGGT 50
BSNT_04238___ 51 TTTTAGAAAAGCGATGTTAGACGATCAAATTCAAGTAGTGGCCATTAACG 100
.||.||||||||.|||..|||.||||||||||||.||...||||||||.|
RBAM_026060__ 51 GTTCAGAAAAGCAATGGAAGATGATCAAATTCAAATAACAGCCATTAATG 100
BSNT_04238___ 101 CCAGCTATTCCGCAGAAACGCTGGCTCATTTAATAAAGTATGACACAATT 150
|.||||||.||.|.||||||||.||||||||.||||||||||||||||||
RBAM_026060__ 101 CAAGCTATCCCCCGGAAACGCTTGCTCATTTGATAAAGTATGACACAATT 150
BSNT_04238___ 151 CACGGCAGATACGACAAAGAGGTTGTGGCTGGTGAAGATAGCCTGATCGT 200
|||||||.||||||..||||.||||.|.|....||.||.||.||||||||
RBAM_026060__ 151 CACGGCAAATACGATCAAGAAGTTGAGACCTCCGACGACAGTCTGATCGT 200
BSNT_04238___ 201 AAATGGAAAGAAA----GTGCTTTTGTTAAACAGCCGTGATCCAAAACAG 246
.||.||||| |.| .||| ||||.||..||||.|||||.|.|.||
RBAM_026060__ 201 CAACGGAAA-ACATATTATGC---TGTTCAATCGCCGGGATCCGAGAGAG 246
BSNT_04238___ 247 CTGCCTTGGCGGGAATATGATATTGACATAGTCGTCGAAGCAACAGGGAA 296
||.||.|||...||||..|..||.|||||.|||||.||.|||||.|||||
RBAM_026060__ 247 CTTCCGTGGAAAGAATGCGGAATAGACATCGTCGTAGAGGCAACGGGGAA 296
BSNT_04238___ 297 GTTTAATGCTAAAGATAAAGCGATGGGCCATATAGAAGCAGGTGCAAAAA 346
.||||||.|.|||||.|||||.|||.|||||||.||||||||.||.||||
RBAM_026060__ 297 ATTTAATTCAAAAGAAAAAGCAATGAGCCATATTGAAGCAGGGGCGAAAA 346
BSNT_04238___ 347 AAGTGATTTTGACCGCTCCGGGAAAAAATGAAGACGTTACCATTGTGATG 396
||||.|||||.||.||||||||.|||||||||||||||||||||||.|||
RBAM_026060__ 347 AAGTCATTTTAACGGCTCCGGGCAAAAATGAAGACGTTACCATTGTCATG 396
BSNT_04238___ 397 GGCGTAAATGAGGACCAATTCGA---CGCTGAGCGCCATGTCATTATTTC 443
||.||||||||.||.||.|||.| ||.||| .||||||||||||||
RBAM_026060__ 397 GGAGTAAATGAAGAGCAGTTCAATCCCGATGA---ACATGTCATTATTTC 443
BSNT_04238___ 444 AAATGCGTCATGCACGACAAATTGCCTTGCGCCTGTTGTAAAAGTGCTGG 493
||||||.||.|||||||||||.||.||||||||.||.||.||||||||.|
RBAM_026060__ 444 AAATGCATCCTGCACGACAAACTGTCTTGCGCCGGTCGTCAAAGTGCTTG 493
BSNT_04238___ 494 ATGAAGAGTTTGGCATTGAGAGCGGTCTGATGACTACAGTTCATGCGTAT 543
||.|.||.||.||.|||||.|||||.||||||||.||.|||||.||.||.
RBAM_026060__ 494 ATCAGGAATTCGGGATTGAAAGCGGCCTGATGACGACTGTTCACGCTTAC 543
BSNT_04238___ 544 ACGAATGACCAAAAAAATATTGATAACCCGCACAAAGATTTGCGCCGGGC 593
||||||||.|||||||||||.||.||.|||||.||||||.||||..||||
RBAM_026060__ 544 ACGAATGATCAAAAAAATATCGACAATCCGCATAAAGATCTGCGGAGGGC 593
BSNT_04238___ 594 GCGGGCTTGCGGTGAATCCATCATTCCAACAACAACAGGAGCGGCAAAGG 643
|.|.||.|||||.||||||||||||||.||..|.|||||.||.||.||.|
RBAM_026060__ 594 GAGAGCGTGCGGAGAATCCATCATTCCGACTTCTACAGGCGCCGCCAAAG 643
BSNT_04238___ 644 CGCTTTCGCTTGTGCTGCCGCATCTGAAAGGAAAACTTCACGGCCTCGCC 693
||||.|||||.|||||.||.|||.|||||||||||||||||||.|||||.
RBAM_026060__ 644 CGCTGTCGCTCGTGCTTCCTCATTTGAAAGGAAAACTTCACGGTCTCGCT 693
BSNT_04238___ 694 TTGCGTGTCCCTGTTCCGAACGTCTCATTGGTTGATCTCGT-TGTTGATC 742
||||||||.||.||||||||.||.|||||.||.||.||.|| || .|||.
RBAM_026060__ 694 TTGCGTGTTCCCGTTCCGAATGTGTCATTAGTGGACCTTGTCTG-CGATA 742
BSNT_04238___ 743 TGAAAACGGATGTTACGGCTGAAGAAGTAAACGAGGCATTTAAACGCGCT 792
|||||||.|||||..||||.||..||||.||||..||.||..||.|.||.
RBAM_026060__ 743 TGAAAACAGATGTGTCGGCCGAGCAAGTGAACGCCGCTTTCCAAAGAGCC 792
BSNT_04238___ 793 GCCAAAACGTCGATGTACGGTGTACTTGATTACTCAGATGAACCGCTCGT 842
||.|||||||||||||||||..|.||||||||.||.||||||||||||||
RBAM_026060__ 793 GCAAAAACGTCGATGTACGGAATTCTTGATTATTCGGATGAACCGCTCGT 842
BSNT_04238___ 843 TTCGACTGATTATAATACGAATCCGCATTCAGCGGTCATTGACGGGCTTA 892
|||..|.|||||||||||||||.|.||.||.|||.||||.|||||.||.|
RBAM_026060__ 843 TTCTTCGGATTATAATACGAATTCACACTCTGCGATCATCGACGGTCTGA 892
BSNT_04238___ 893 CAACAATGGTAATGGAAGACAGGAAAGTAAAGGTGCTGGCGTGGTATGAC 942
||||.|||||.|||||||||.|.||||||||||||||.||.|||||||||
RBAM_026060__ 893 CAACGATGGTGATGGAAGACCGAAAAGTAAAGGTGCTCGCCTGGTATGAC 942
BSNT_04238___ 943 AACGAATGGGGCTACTCCTGCAGAGTTGTTGATCTAATCCGCCATGTAGC 992
||.||||||||.||.||||||.|.||.||||||||.|||||.||.||.||
RBAM_026060__ 943 AATGAATGGGGATATTCCTGCCGGGTCGTTGATCTTATCCGTCACGTCGC 992
BSNT_04238___ 993 GGCACGAATGAAACATCCGTCTGCTGTATAA 1023
.||.|||||||||||.|||||.|||||.||.
RBAM_026060__ 993 CGCGCGAATGAAACACCCGTCAGCTGTGTAG 1023
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