Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04220 and RBAM_025970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:38
# Commandline: needle
# -asequence dna-align/BSNT_04220___lytS.1.9828.seq
# -bsequence dna-align/RBAM_025970___lytS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04220___lytS-RBAM_025970___lytS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04220___lytS-RBAM_025970___lytS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04220___lytS
# 2: RBAM_025970___lytS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1806
# Identity: 1355/1806 (75.0%)
# Similarity: 1355/1806 (75.0%)
# Gaps: 48/1806 ( 2.7%)
# Score: 4911.0
#
#
#=======================================
BSNT_04220___ 1 ATGATTCATTTAATGATTATGATGCTGGAGAGAGTGGGGATTATTGTTAT 50
|||.|.|||||.||.||.|||||||||||.|||||.||.|||||.||.||
RBAM_025970__ 1 ATGCTGCATTTGATCATCATGATGCTGGAAAGAGTCGGAATTATCGTCAT 50
BSNT_04220___ 51 ATTAGGGTTCATTCTCGCCCATACGAAACTTTTCAGACAAGCTCTTCAGA 100
|||.||.||..||||.||.|||||.|.|.|.||||||||.||.||.|||.
RBAM_025970__ 51 ATTGGGATTTGTTCTGGCTCATACCAGATTGTTCAGACAGGCGCTCCAGC 100
BSNT_04220___ 101 ATCAGGACGGCTATAAAGGAAAAGCGATTTTAATTTCTATTTTTTCTCTT 150
|.|..||..||||||||||.||||||.|..|.|||||.|||||.||.||.
RBAM_025970__ 101 AGCCTGAGAGCTATAAAGGCAAAGCGGTGCTGATTTCAATTTTCTCGCTG 150
BSNT_04220___ 151 TTCAGCATCATCAGCAATTATACAGGCATCGAAATTCAAAGAAATATGAT 200
|||||.|||||||||||.|||||.||.||.||||||||..|.||||..||
RBAM_025970__ 151 TTCAGTATCATCAGCAACTATACGGGAATAGAAATTCAGCGGAATACAAT 200
BSNT_04220___ 201 TGTAAACAATGACTGGGTGTTTACGATAGATCCATCAGGCTCTATCGCGA 250
..|.||.|||||||||||||||...||..||||.||.||.||.||.||.|
RBAM_025970__ 201 CATGAATAATGACTGGGTGTTTCAAATTAATCCGTCCGGTTCAATTGCCA 250
BSNT_04220___ 251 ATACCCGTATTTTGGGCGTGGAAATCGGGGGCCTTCTCGGAGGTCCGTTT 300
||||..|.|||.|||||||.||||||||.||.||..|.||.||.||||.|
RBAM_025970__ 251 ATACAAGAATTATGGGCGTTGAAATCGGCGGACTCTTAGGCGGCCCGTAT 300
BSNT_04220___ 301 GTAGGGGCCGGGATCGGCATACTTGCGGGCCTGCATCGTTTTTCACTCGG 350
||.|||..|||..||||||||||.||.||||||||||||||.||||||||
RBAM_025970__ 301 GTGGGGATCGGCGTCGGCATACTGGCCGGCCTGCATCGTTTATCACTCGG 350
BSNT_04220___ 351 TGGCAGC-ACGGCTTTAAGCTGTGCCGTATCATCTATTTTAGCGGGTGTT 399
.||| || ||.||..|.|||||||||||.|||||..||||||||||..||
RBAM_025970__ 351 CGGC-GCGACCGCAGTCAGCTGTGCCGTCTCATCCGTTTTAGCGGGCATT 399
BSNT_04220___ 400 CTTG-CAGGCTTGATCGGCAGGTATTTTACGAAGCGATAT-CGAATGCCG 447
||| |.||.|.||||||..|||||||.|..||.||.||| || ||||||
RBAM_025970__ 400 -TTGTCCGGATGGATCGGACGGTATTTCAGAAAACGCTATGCG-ATGCCG 447
BSNT_04220___ 448 ACACCGCGCATCGCCGCTCTTGTGGGAATCGGCATGGAGTCACTGCAAAT 497
||||||||..|.|||||.|||||.|||.||||.|||||.||.||||||||
RBAM_025970__ 448 ACACCGCGGGTGGCCGCGCTTGTCGGACTCGGAATGGAATCGCTGCAAAT 497
BSNT_04220___ 498 GATCATTATTTTGCTGATGGCAAAGCCGTTCAGTGACGCTTGGGAGCTTG 547
|.|..|.||..|..|||||||.||||||||...|||.||||||..|||||
RBAM_025970__ 498 GCTGCTCATCCTCTTGATGGCCAAGCCGTTTTCTGATGCTTGGACGCTTG 547
BSNT_04220___ 548 TCAGCATGATCGGAATTCCGATGATACTCATCAATGGAACAGGCAGTTTT 597
|.|||||.|||||.||.|||||||||.|..|.||.||..||||.|.||||
RBAM_025970__ 548 TGAGCATCATCGGCATCCCGATGATATTGGTAAACGGGTCAGGGACTTTT 597
BSNT_04220___ 598 ATTTTTCTGTCTATTATTCAAGCGATCATTCGCAAGGAAGAACAGGCAAG 647
||||||||.||.||.|||||..||||.||.||.||||||||||.|||.||
RBAM_025970__ 598 ATTTTTCTTTCGATCATTCAGTCGATTATCCGGAAGGAAGAACGGGCGAG 647
BSNT_04220___ 648 AGCTCTCGAAACGCATCGAGTGCTGACGATTGCTGATCAGACACTTCCAT 697
|||.||.|||||.||..|.|||||||.||||||.||.|||||.|||||.|
RBAM_025970__ 648 AGCCCTTGAAACCCACAGGGTGCTGATGATTGCCGACCAGACGCTTCCGT 697
BSNT_04220___ 698 TTTTTCGCCAAGGATTAAATGAAAACTCCTGTAAAAGTGTAGCGGCTATT 747
||||.|||||.||..|.|||||||.|||.||.|||||.||.||.||.||.
RBAM_025970__ 698 TTTTCCGCCAGGGGCTGAATGAAAGCTCATGCAAAAGCGTCGCCGCCATC 747
BSNT_04220___ 748 ATCCATAAGCTGACAGGAACAGATGCGGTGTCTCTCACTGATAAAGAAAA 797
||.||.|.||..||||||||.||.|||||.||.||.||.|||||.|||||
RBAM_025970__ 748 ATTCACAGGCAAACAGGAACGGACGCGGTATCGCTTACGGATAACGAAAA 797
BSNT_04220___ 798 GATCCTTGCGCATGTCGGTGCGGGAATG--GATCACCACATCCCATCGAA 845
|||..|.|||||.|||||.||||| || ||.||.||.||.||.||..|
RBAM_025970__ 798 GATTTTGGCGCACGTCGGCGCGGG--TGCCGACCATCATATTCCGTCTGA 845
BSNT_04220___ 846 AAGTTTGATCACCGGCCTGTCCAAAAAG-GTGATTAAAACAGGGCATATT 894
|||..||||||||||..||| |||||.| ||.||||||||.||.||||||
RBAM_025970__ 846 AAGCCTGATCACCGGATTGT-CAAAACGCGTCATTAAAACGGGTCATATT 894
BSNT_04220___ 895 ATGAAGGCGATTTCACAGGAAGAGATTGAATGCACGCATGCTGAATGCCC 944
|||||.||||..|||.|||||||.||||||||||||||.|.|...||.||
RBAM_025970__ 895 ATGAAAGCGACATCAAAGGAAGAAATTGAATGCACGCACGATCCCTGTCC 944
BSNT_04220___ 945 TTTGCACGCTGCAATTGTCCTGCCGCTGACATCGAACGGCAATACAATCG 994
..||||.||.||.||.||..||||||||||.||.||||||||.||.||||
RBAM_025970__ 945 GCTGCATGCGGCGATCGTATTGCCGCTGACGTCAAACGGCAAAACGATCG 994
BSNT_04220___ 995 GCACCTTAAAAATGTACTTTAAAAGCCCGGCAGGCCTGAGTCAGGTAGAG 1044
|.||.||.|||||||||||||||||||||.||||..|.||.|.|||.||.
RBAM_025970__ 995 GGACGTTGAAAATGTACTTTAAAAGCCCGTCAGGTTTAAGCCGGGTTGAA 1044
BSNT_04220___ 1045 GAGGAACTTGCCGAGGGGCTGGCCATGCTGTTTTCGACACAGCTTGAGCT 1094
||.||.|||||.||.||.||.||||||||||||||.||.||||||||.||
RBAM_025970__ 1045 GAAGAGCTTGCAGAAGGACTCGCCATGCTGTTTTCCACCCAGCTTGAACT 1094
BSNT_04220___ 1095 TGGGGAAGCAGAGCTGCAAAGCAAACTTCTCAAGGATGCTGAAATTAAAG 1144
.||.||.||.||.|||||.||||||.|.||.||.||.||.|||||.||.|
RBAM_025970__ 1095 CGGCGAGGCGGAACTGCAGAGCAAATTGCTGAAAGACGCAGAAATAAAGG 1144
BSNT_04220___ 1145 CGCTTCAAGCACAGGTGAATCCGCATTTTTTATTTAATGCGATCAACACG 1194
|||||||.||||||||.||||||||||||.|.||||||||||||||.|||
RBAM_025970__ 1145 CGCTTCAGGCACAGGTCAATCCGCATTTTCTGTTTAATGCGATCAATACG 1194
BSNT_04220___ 1195 ATTTCTGCGTTATGCCGTACAGATGTTGAAAAAACCCGTAAGCTCCTATT 1244
||||||||..|.||||||||.|||||.|||||||||||.|||||.||..|
RBAM_025970__ 1195 ATTTCTGCTCTTTGCCGTACGGATGTGGAAAAAACCCGAAAGCTTCTGCT 1244
BSNT_04220___ 1245 GCAGCTCAGTGTTTATTTTCGTTCAAACCTTCAAGGAGCGAGACAGCTGC 1294
|||||||||.||.|||||.|||||.||.||.||.||.||.||.|||||||
RBAM_025970__ 1245 GCAGCTCAGCGTCTATTTCCGTTCCAATCTGCAGGGGGCAAGGCAGCTGC 1294
BSNT_04220___ 1295 TGATCCCGCTCTCAAAGGAGCTGAACCATCTTAACGCCTATTTGTCATTA 1344
|.||||||||.||.||.||.|||||||||||..|.||.|||||.|||||.
RBAM_025970__ 1295 TCATCCCGCTTTCTAAAGAACTGAACCATCTGCAGGCGTATTTATCATTG 1344
BSNT_04220___ 1345 GAACAGGCGCGTTTTCCCGGGAAATATAAAATTGAG-CTTAATATCGACA 1393
||.|||||.|||||||||||||||||||||| |.|| |||.|.|||||..
RBAM_025970__ 1345 GAGCAGGCCCGTTTTCCCGGGAAATATAAAA-TCAGTCTTGAAATCGAAC 1393
BSNT_04220___ 1394 GCAGACTGGAGCAGATTGAAATCCCTCCGTTTGTTTTGCAGGTGCTTGTC 1443
||.|..|||||.|.||.|||||.|||||.|||||..|||||.|.||.|||
RBAM_025970__ 1394 GCGGTTTGGAGGACATCGAAATTCCTCCTTTTGTGCTGCAGATTCTCGTC 1443
BSNT_04220___ 1444 GAGAACGCGCTTCGGCACGCGTTTCCGAAAAAACAAGACA--TGTGCAAG 1491
||.||.|||||.||.||.||.|||.|.|.|||.||.|||| ||||| .
RBAM_025970__ 1444 GAAAATGCGCTCCGCCATGCATTTTCAAGAAAGCAGGACAGCTGTGC--C 1491
BSNT_04220___ 1492 GTTACAGTCTGTGTCTTATCTGATGATGCA-TCCGTCTATATGAAGGTGG 1540
||.|..|||.|.||..||||.|..|.| || ||.||.|..|||..|||.|
RBAM_025970__ 1492 GTCAATGTCAGCGTGGTATCCGCCGGT-CAGTCGGTTTTAATGCGGGTTG 1540
BSNT_04220___ 1541 CGGATAACGGACGCGGAATTCCGCCGGACGTCTTGCCGGAACTGGGAAAG 1590
..||||||||.||.||||||...|||||..|..||.|.|..||.| |
RBAM_025970__ 1541 GAGATAACGGGCGAGGAATTGATCCGGAATTGCTGTCCGTGCTCG----G 1586
BSNT_04220___ 1591 AAACCGT----TTCCGTCTAAGGAGGGAACCGGTACAGCGCTTTATAACC 1636
||||||| |.||||||||.||.||.||.||.||.||||||||.||..
RBAM_025970__ 1587 AAACCGTCCGCTGCCGTCTAAAGAAGGGACGGGAACCGCGCTTTACAATT 1636
BSNT_04220___ 1637 TAAATCAGCGGCTGATCGGTTTATTCGG----ACAGCAG-GCTGC-ACTG 1680
|||||||||||||||||||..|.||||| |.||||| .|||| |.||
RBAM_025970__ 1637 TAAATCAGCGGCTGATCGGGCTGTTCGGCCCCAAAGCAGCCCTGCGATTG 1686
BSNT_04220___ 1681 CATATCAGCAGTGA----GGTTCATAAAGGGACAGAGGTCTCCTTTCAAG 1726
.| .||||| || .|||||.||.||.||.||.|||.|..
RBAM_025970__ 1687 GA------AAGTGAGCCCGG----CAAAGGTACGGACGTATCATTTGAGC 1726
BSNT_04220___ 1727 TGCCAATGCAACAGATGAAAGAGGGAGAAGAACATGCTCAGGGTGTTAAT 1776
||||..||.|||.|||||...|.|||||||||||||||.|.|||||||||
RBAM_025970__ 1727 TGCCTTTGAAACTGATGACTAAAGGAGAAGAACATGCTGAAGGTGTTAAT 1776
BSNT_04220___ 1777 AGTTGA 1782
.|||||
RBAM_025970__ 1777 CGTTGA 1782
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