Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04202 and RBAM_025860
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04202___araA.1.9828.seq
# -bsequence dna-align/RBAM_025860___araA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04202___araA-RBAM_025860___araA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04202___araA-RBAM_025860___araA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04202___araA
# 2: RBAM_025860___araA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1514
# Identity: 1165/1514 (76.9%)
# Similarity: 1165/1514 (76.9%)
# Gaps: 37/1514 ( 2.4%)
# Score: 4451.5
#
#
#=======================================
BSNT_04202___ 1 ------ATGCTTCAGACAAAGGATTATGAATTCTGGTTTGTGACAGGAAG 44
.|||||||.|..||.||.||||||||.||||||||.||.|||||
RBAM_025860__ 1 ATGAATGTGCTTCAAAACAATGAATATGAATTTTGGTTTGTAACGGGAAG 50
BSNT_04202___ 45 CCAGCACCTATACGGGGAAGAGACGCTGGAACTCGTAGATCAGCATGCTA 94
|||||||.|||||||.||.||.||||||.|.||.||.|||.|.||.||.|
RBAM_025860__ 51 CCAGCACTTATACGGAGAGGAAACGCTGCAGCTTGTCGATAAACACGCAA 100
BSNT_04202___ 95 AAAGCATTTGTGAGGGGCTCAGCGGGATTTCTTCCAGATATAAAATCACT 144
|..|.||.|||||.||.|||||||||.|.||.||.|||||.||.||||..
RBAM_025860__ 101 AGGGAATATGTGACGGCCTCAGCGGGGTGTCATCAAGATACAAGATCAGG 150
BSNT_04202___ 145 CATAAGCCCGTCGTCACTTCACCGGAAACCATTAGAGAGCTGTTAAGAGA 194
|||||.||.||.|||||.|||.|.|||||.||.||||||.|.||..|.||
RBAM_025860__ 151 CATAAACCGGTTGTCACGTCATCTGAAACGATCAGAGAGGTTTTGCGGGA 200
BSNT_04202___ 195 AGCGGAGTA-CAGTGAGACA--TGTGCTGGCATCATTACATGGATGCACA 241
||||.|||| || |||.| |||||.||..||.|.|||||||||||.|
RBAM_025860__ 201 AGCGCAGTATCA---AGAAAACTGTGCCGGGGTCGTGACATGGATGCATA 247
BSNT_04202___ 242 CATTTTCCCCTGCAAAAATGTGGATAGAAGGCCTTTCCTCTTATCAAAAA 291
|||||||||||||.|||||||||||.|||||.||||||.|||.||||||.
RBAM_025860__ 248 CATTTTCCCCTGCGAAAATGTGGATTGAAGGTCTTTCCGCTTTTCAAAAG 297
BSNT_04202___ 292 CCGCTTATGCATTTGCATACCCAATATAATCGCGATATCCCGTGGGGTAC 341
|||.|..|.|||.||||||||||||||.|.|||||.||||||||||..||
RBAM_025860__ 298 CCGATGCTTCATCTGCATACCCAATATCACCGCGACATCCCGTGGGAAAC 347
BSNT_04202___ 342 GATTGACATGGATTTTATGAACAGCAACCAATCCGCGCATGGCGATCGAG 391
||||||.|||||.|||||||||||||||||||||||.||.||.||.||.|
RBAM_025860__ 348 GATTGATATGGACTTTATGAACAGCAACCAATCCGCTCACGGAGACCGGG 397
BSNT_04202___ 392 AGTACGGTTACATCAACTCGAGAATGGGGCTTAGCC--GAAAAGTCATTG 439
|.|||||.||.|||.|.||.|||||||||| ||.| ||||||||||.|
RBAM_025860__ 398 AATACGGGTATATCCAGTCAAGAATGGGGC--AGACGAGAAAAGTCATCG 445
BSNT_04202___ 440 CCGGCTATTGGGATGATGAAGAAGTGAAAAAAGAAATGTCCCAGTGGATG 489
|.|||||||||||||||||.|||||.|||.|.||.||.||.||.||||||
RBAM_025860__ 446 CAGGCTATTGGGATGATGAGGAAGTCAAACATGACATTTCGCAATGGATG 495
BSNT_04202___ 490 GATACGGCGGCTGCATTAAATGAAAGCAGACATATTAAGGTTGCCAGATT 539
.|.||.||.||.||.|..|||||||||||..|||||||.||.|||.|.||
RBAM_025860__ 496 AACACTGCTGCCGCCTGGAATGAAAGCAGGAATATTAAAGTAGCCCGGTT 545
BSNT_04202___ 540 TGGAGATAACATGCGTCATGTAGCGGTAACGGACGGAGACAAGGTGGGAG 589
.||.||.||.|||||..||||||||||.||.|||||||||||.||.||.|
RBAM_025860__ 546 CGGCGACAATATGCGGAATGTAGCGGTTACTGACGGAGACAAAGTCGGCG 595
BSNT_04202___ 590 CGCATATTCAATTTGGCTGGCAGGTTGACGGATATGGCATCGGGGATCTC 639
|.||.||.|||||.|||||||||||||||||.||.||.|||||.|||||.
RBAM_025860__ 596 CCCACATCCAATTCGGCTGGCAGGTTGACGGGTACGGAATCGGCGATCTT 645
BSNT_04202___ 640 GTTGAAGTGATGGATCGCATTACGGACGACGAGGTTGACACGCTTTATGC 689
...||.||||||.|...|.|.||.||||..||..||||..|||||||||.
RBAM_025860__ 646 ACCGAGGTGATGAACAACGTCACCGACGCAGAAATTGAGGCGCTTTATGA 695
BSNT_04202___ 690 CGAGTATGACAGACTATATGTGATCAGTGAGGAAACAAAACGTGACGAAG 739
.||.||.||||.|.|.|||||.|||||.|..||||||||||..||.||||
RBAM_025860__ 696 GGAATACGACAAATTGTATGTCATCAGCGGCGAAACAAAACAAGATGAAG 745
BSNT_04202___ 740 CAAAGGTAGCGTCCATTAAAGAACAGGCGAAAATTGAGCTTGGCTTAACC 789
||||.||.||.||||||||||||||||||||||||||.||.||.|||||.
RBAM_025860__ 746 CAAAAGTTGCTTCCATTAAAGAACAGGCGAAAATTGAACTCGGATTAACG 795
BSNT_04202___ 790 GCTTTTCTTGAGCAAGGCGGATACACAGCGTTTACGACATCGTTTGAAGT 839
||.|||||.||.|..||||||||.|||||||||.||||.||.||||||||
RBAM_025860__ 796 GCCTTTCTCGAACGGGGCGGATATACAGCGTTTTCGACCTCCTTTGAAGT 845
BSNT_04202___ 840 GCTGCACGGAATGAAACAGCTGCCGGGACTTGCTGTTCAGCGCCTTATGG 889
..|||||||||||||.|||||.|||||||||||.||||||||.||.||||
RBAM_025860__ 846 TTTGCACGGAATGAAGCAGCTTCCGGGACTTGCCGTTCAGCGTCTCATGG 895
BSNT_04202___ 890 AGAAAGGCTACGGGTTTGCCGGTGAAGGAGATTGGAAGACAGCGGCCCTT 939
|.|||||.|||||.||||||||.|||||.||||||||.||.||.||||||
RBAM_025860__ 896 AAAAAGGGTACGGATTTGCCGGCGAAGGCGATTGGAAAACGGCTGCCCTT 945
BSNT_04202___ 940 GTACGGATGATGAAAATCATGGCTAAAGGAAAAAGAACTTCCTTCATGGA 989
||.||.|||||||||||.|||||..|.|||.||..|||.|||||||||||
RBAM_025860__ 946 GTGCGAATGATGAAAATAATGGCGGACGGAGAACAAACCTCCTTCATGGA 995
BSNT_04202___ 990 AGATTACACGTACCATTTTGAACCGGGAAATGAAATGATTCTGGGCTCTC 1039
||||||.||||||||||||||||||||...||..||||||||.||.||.|
RBAM_025860__ 996 AGATTATACGTACCATTTTGAACCGGGGCGTGCGATGATTCTCGGATCAC 1045
BSNT_04202___ 1040 ACATGCTTGAAGTGTGTCCGACTGTCGCTTTGGATCAGCCGAAAATCGAG 1089
|.|||||||||||.||||||||..||||..|.|||||||||||||||||.
RBAM_025860__ 1046 ATATGCTTGAAGTATGTCCGACGATCGCCCTTGATCAGCCGAAAATCGAA 1095
BSNT_04202___ 1090 GTTCATCCGCTTTCGATTGGCGGCAAGGAGGACCCTGCGCGTTTTGTATT 1139
||.|||||.||.||.||.||.||.|||||.||.||.||.||.||.||.||
RBAM_025860__ 1096 GTCCATCCTCTCTCAATCGGAGGGAAGGAAGATCCGGCCCGGTTGGTCTT 1145
BSNT_04202___ 1140 TAACGGCATCAGCGGTTCTGCCAT--TCAAGCTAGCATTGTTGATATTGG 1187
||||||.|||.|||||||.||||| || ||.|||||..|||||||.||
RBAM_025860__ 1146 TAACGGAATCGGCGGTTCAGCCATCATC--GCCAGCATCATTGATATCGG 1193
BSNT_04202___ 1188 CGGGCGTTTCCGCCTTGTGCTGAATGAAGTCACCGGTCA-GGAAATTGAA 1236
||||||.|||||.||..|.|||||||||| ||...|.|| |||||||||.
RBAM_025860__ 1194 CGGGCGATTCCGTCTCATTCTGAATGAAG-CAGAAGGCAGGGAAATTGAT 1242
BSNT_04202___ 1237 AAAGACATGCCGAATTTACCGGTTGCCCGTGTTCTCTGGAAGCCGGAGCC 1286
.|.||.|||||||||.|.||.||.||.||.||.||.||||||||||||||
RBAM_025860__ 1243 CATGATATGCCGAATCTCCCTGTGGCGCGGGTGCTATGGAAGCCGGAGCC 1292
BSNT_04202___ 1287 GTCATTGAAAACAGCAGCGGAGGCATGGATTTTAGCCGGCGGTGCACATC 1336
.||..||||||||||.|||||.|||||||||||.||.||.||.||.||||
RBAM_025860__ 1293 ATCGCTGAAAACAGCTGCGGAAGCATGGATTTTGGCGGGAGGCGCCCATC 1342
BSNT_04202___ 1337 ATACCTGCCTGTCTTATGAACTGACAGCGGAGCAAATGCTTGATTGGGCG 1386
||||.||..||||||.....||.||.||.||.||.||||||||.|||||.
RBAM_025860__ 1343 ATACTTGTATGTCTTTCCGGCTTACGGCTGAACAGATGCTTGACTGGGCT 1392
BSNT_04202___ 1387 GAAATGGCGGGGATCGAAAGTGTTCTCATTTCCCGTGATA-CGACAATTC 1435
||.|||||.||.||.|||||..|..|.|||||||||.||| ||| |||.|
RBAM_025860__ 1393 GAGATGGCAGGCATTGAAAGCATCTTTATTTCCCGTAATACCGA-AATAC 1441
BSNT_04202___ 1436 ATAAACTGAAACACGAGTTAAAATGGAACGAGGCGCTTTACCGGCTTCAA 1485
||.|.||||||.|.|||.|.||||||||.||.|...|.||||||.|
RBAM_025860__ 1442 ATGAGCTGAAAAAAGAGCTGAAATGGAATGACGTATTATACCGGTT---- 1487
BSNT_04202___ 1486 AAGTAG-------- 1491
.|.||
RBAM_025860__ 1488 -GGGAGGGAATTGA 1500
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