Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04201 and RBAM_025850
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:37
# Commandline: needle
# -asequence dna-align/BSNT_04201___araB.1.9828.seq
# -bsequence dna-align/RBAM_025850___araB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04201___araB-RBAM_025850___araB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04201___araB-RBAM_025850___araB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04201___araB
# 2: RBAM_025850___araB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1723
# Identity: 1272/1723 (73.8%)
# Similarity: 1272/1723 (73.8%)
# Gaps: 77/1723 ( 4.5%)
# Score: 4597.5
#
#
#=======================================
BSNT_04201___ 1 ATGGCTTACACAATAGGGGTTGATTTTGGAACTTTATCAGGAAGAGCAGT 50
|||||.||.||.||.||.||||||||.||.||.||.||.||..|.||.||
RBAM_025850__ 1 ATGGCGTATACGATTGGTGTTGATTTCGGCACATTGTCCGGCCGGGCGGT 50
BSNT_04201___ 51 GCTCGTTCATGTCCAAACAGGGGAGGAACTTGCGGCTGCTGTAAAAGAAT 100
|||.||..||||||..||.||.||.||..|.|||.||||.||||||||||
RBAM_025850__ 51 GCTTGTCAATGTCCGCACGGGCGAAGAGATCGCGTCTGCGGTAAAAGAAT 100
BSNT_04201___ 101 ACCGGCATGCTGTCATTGATACCGTC---CTTCCAAAAACGGGTCAAAAG 147
||...|||||.|||||.| |||| | ||.||.||.||||||.||||.
RBAM_025850__ 101 ACACTCATGCCGTCATCG--ACCG-CACGCTGCCGAAGACGGGTGAAAAA 147
BSNT_04201___ 148 CTGCCGCGTGACTGGGCGCTGCAGCACCCTGCTGATTACCTCGAAGTCTT 197
||.||.||.|||||||||||.|||||.|||||.|||||..|||||||..|
RBAM_025850__ 148 CTCCCTCGGGACTGGGCGCTTCAGCATCCTGCCGATTATATCGAAGTTCT 197
BSNT_04201___ 198 GGAAACAACCATTCCGTCTTTACTCGAACAGACGGGCGTTGAACCGAAAG 247
||||||..|.||||||....|.||..||.||.||||||.|||.||.||||
RBAM_025850__ 198 GGAAACGGCGATTCCGAACCTGCTTCAAGAGGCGGGCGCTGATCCAAAAG 247
BSNT_04201___ 248 ACATTATCGGGATTGGAATTGATTTCACGGCATGTACGATCCTTCCTATT 297
||.|.|||||.||.|||||||||||.||.||.||.|||||..|.||.||.
RBAM_025850__ 248 ACGTGATCGGCATAGGAATTGATTTTACCGCCTGCACGATTTTGCCGATA 297
BSNT_04201___ 298 GACAGCAGC-GGGCAGCCGTTATGCATGCTGCCTGAATATGAAGAGGAGC 346
||| |..|| |||||||||.|.||.||||||||.||||.||||..|||||
RBAM_025850__ 298 GAC-GTCGCGGGGCAGCCGCTTTGTATGCTGCCGGAATTTGAACGGGAGC 346
BSNT_04201___ 347 CGCACAGCTATGTGAAGCTCTGGAAGCATCATGCGGCCCAAAAACATGCT 396
|.|||||.|||||||||||.|||||||||||||||||.|||||||||||.
RBAM_025850__ 347 CCCACAGTTATGTGAAGCTGTGGAAGCATCATGCGGCTCAAAAACATGCA 396
BSNT_04201___ 397 GATCGGCTCAATCA-AATCGCGGAAGA-AGAAGGGAAGGCTTTTTTACAG 444
||.||..|.|| || .||.||.||||| |.||..|||...||..||| |.
RBAM_025850__ 397 GACCGTTTGAA-CACGATTGCCGAAGACACAAAAGAAACATTCCTTA-AA 444
BSNT_04201___ 445 CGGTACGGAGGAAAAATTTCATCAGAATGGATGATTCCAAAGGTCATGCA 494
.|.|||||.||.||||||||.||.|||||||||||.||.||..|||||||
RBAM_025850__ 445 AGATACGGCGGTAAAATTTCTTCTGAATGGATGATCCCGAAAATCATGCA 494
BSNT_04201___ 495 AATTGCCGAGGAAGCGCCTCACATTTATGAAGCGGCTGACCGGATCATCG 544
|||.||.||.||||||||.||.||.||..|.|||||.||.|||||..|.|
RBAM_025850__ 495 AATCGCGGAAGAAGCGCCGCATATATACAAGGCGGCAGATCGGATTGTGG 544
BSNT_04201___ 545 AGGCTGCGGACTGGATCGTGTACCAGCTGTGCGGCTCGCTCAAGCGAAGC 594
|.||.||.|||||||||||.||.||..|||||||.||..|.|||||||||
RBAM_025850__ 545 AAGCGGCAGACTGGATCGTCTATCAATTGTGCGGTTCATTGAAGCGAAGC 594
BSNT_04201___ 595 AATTGTACCGCAGGGTATAAAGCGATGTGGAGTGAAAAAGCGGGGTATCC 644
||.||.||.||.||.||.|||||.||.||||.|||..|..||||||||||
RBAM_025850__ 595 AACTGCACGGCCGGCTACAAAGCAATCTGGAATGAGGAGACGGGGTATCC 644
BSNT_04201___ 645 GTCAGATGATTTCTTTGAGAAATTAAATCCTTCAATGAAAACGATTACAA 694
|.|.|||.||||.||.||.|...|.||.||.|.|||||||||||||||||
RBAM_025850__ 645 GCCGGATCATTTTTTCGAAAGGCTCAACCCGTTAATGAAAACGATTACAA 694
BSNT_04201___ 695 AGGACAAATT----GGCAGGTTCTATTCATTCGGTAGGAGAAAAAGCCGG 740
|||||||||| |||| |||||.||||.||.||.|||||.||.||
RBAM_025850__ 695 AGGACAAATTAAGCGGCA----CTATTTATTCAGTCGGGGAAAAGGCAGG 740
BSNT_04201___ 741 CAGTCTGACTGAAAAAATGGCAAAGCTGACAGGGCTTCTCCCGGGAACGG 790
..||.||||.|||||||||||..|||||||.||||||||.|||||.||||
RBAM_025850__ 741 AGGTTTGACCGAAAAAATGGCGGAGCTGACCGGGCTTCTGCCGGGGACGG 790
BSNT_04201___ 791 CTGTTGCGGTTGCCAATGTGGACGCTCATGTTTCCGTACCGGCGGTTGGC 840
|.|||||.||.||||||||.|||||.||.||.||.||.||.|||||.||.
RBAM_025850__ 791 CCGTTGCCGTCGCCAATGTCGACGCCCACGTGTCAGTGCCCGCGGTCGGT 840
BSNT_04201___ 841 ATTACAGAGCCAGGGAAAATGCTGATGATTATGGGAACCTCAACGTGCCA 890
|||||||||||.||||||||||||||||||||||||||.||.||.|||||
RBAM_025850__ 841 ATTACAGAGCCGGGGAAAATGCTGATGATTATGGGAACGTCTACCTGCCA 890
BSNT_04201___ 891 TGTTCTTCTTGGTGAAGAGGTGCATATCGTTCCAGGTATGTGCGGCGTTG 940
|||.||.||.||.||.|..|..||||||||.||.|||||||||||.||.|
RBAM_025850__ 891 TGTGCTACTCGGCGAGGGAGAACATATCGTCCCCGGTATGTGCGGGGTCG 940
BSNT_04201___ 941 TGGACAACGGAATTCTCCCGGGCTATGCGGGATATGAAGCCGGGCAGTCC 990
|..|.|||||.||..|.||.||.|||||||||||||||||.||.||||||
RBAM_025850__ 941 TCAATAACGGCATCTTGCCCGGATATGCGGGATATGAAGCGGGACAGTCC 990
BSNT_04201___ 991 TGTGTCGGCGATCATTTTGACTGGTTTGTGAAAACATGTGTCCCGCCAGC 1040
|||||||||||.||.|||||.|||||.||.|||||.||.||.|||..||.
RBAM_025850__ 991 TGTGTCGGCGACCACTTTGAATGGTTCGTCAAAACGTGCGTTCCGAGAGA 1040
BSNT_04201___ 1041 TTATCAAGAGGAAGCAAAGGAAAAAAACATTGGCGTTCATGAGCTGCTGA 1090
..||.|..|||||||..||||.|||.||||.|.|.||||.||||||||.|
RBAM_025850__ 1041 CCATGAGAAGGAAGCTGAGGATAAACACATAGACATTCACGAGCTGCTCA 1090
BSNT_04201___ 1091 GTGAGAAAGCA----AACCATCAAGCGCCAGGTGAAAGCGGCCTGCTTGC 1136
|..|.|||||| || |..|..||.||.|||||||||||.||.||
RBAM_025850__ 1091 GCAAAAAAGCAGCTGAA----CTTGTTCCGGGGGAAAGCGGCCTTCTCGC 1136
BSNT_04201___ 1137 TTTAGATTGGTGGAATGGAAACCGTTCAACTCTT-GTTGATGCAGATTTA 1185
..|.||.||||||||.||||||||.||||| ||| ||.||.||||||||.
RBAM_025850__ 1137 GCTTGACTGGTGGAACGGAAACCGGTCAAC-CTTGGTGGACGCAGATTTG 1185
BSNT_04201___ 1186 ACAGGGATGCTGCTTGGAATGACACTGCTGACGAAGCCTGAAGAGATTTA 1235
||.||.|||.||||.||.|||||.||||..||||||||.|||||.||.||
RBAM_025850__ 1186 ACGGGCATGATGCTCGGCATGACGCTGCACACGAAGCCGGAAGAAATCTA 1235
BSNT_04201___ 1236 TAGAGCGTTAGTTGAAGCGACAGCTTACGGAACCCGGATGATTATCGAAA 1285
.||.||.||..|||||||||||||.|.||||||..|||||||||||||||
RBAM_025850__ 1236 CAGGGCATTGATTGAAGCGACAGCGTTCGGAACGAGGATGATTATCGAAA 1285
BSNT_04201___ 1286 CATTCAAAGAAAGCGGTGTTCCGATTGAGGAACTATACGCAGCGGGCGGA 1335
|.|||...||||.|||.||||||.|.||.||.||.||||||||.||.|||
RBAM_025850__ 1286 CGTTCCGGGAAAACGGCGTTCCGGTCGAAGAGCTTTACGCAGCCGGAGGA 1335
BSNT_04201___ 1336 ATAGCTGAGAAAAACCCGTTTGTCATGCAGATTTATGCGGATGTGACAAA 1385
||.|||||||||||.||.|||.|||||||.||||||||.||.||.|||||
RBAM_025850__ 1336 ATCGCTGAGAAAAATCCATTTATCATGCAAATTTATGCAGACGTCACAAA 1385
BSNT_04201___ 1386 CATGGACATTAAAATCTCTGGTTCACCGCAAGCCCCAGCCTTAGGATCTG 1435
.||||||||||||.|.||.|||||.|||||.||.||.||..|.||.||.|
RBAM_025850__ 1386 TATGGACATTAAATTATCCGGTTCTCCGCAGGCGCCTGCACTGGGCTCCG 1435
BSNT_04201___ 1436 CCATTTTCGGTGCGCTTGCAGCAGGCAAAGAAAAAGGCGGCTACGATGAC 1485
|.||||||||.|||||.||.||.||....|||||.||.||.|||
RBAM_025850__ 1436 CGATTTTCGGAGCGCTCGCCGCGGGACGGGAAAACGGGGGATAC------ 1479
BSNT_04201___ 1486 ATCAAA-------GAGGCAGCGGCGAACATGGGAAAACTGAAAGATATAA 1528
||.|| ||.|||...|||.|.|||||.|||.|.|||| |
RBAM_025850__ 1480 -TCCAATATTGCTGAAGCATGTGCGCATATGGGGAAATTAAAAG-----A 1523
BSNT_04201___ 1529 C-----TTATACGCCAAATGCC---GAAAACGCCGCGGTTTATGAAAAAT 1570
| ||||.|.||.| || ||||..||.|.|.|||||||.|..|
RBAM_025850__ 1524 CGGCTTTTATGCCCCGA---CCCGGGAAAGAGCTGAGATTTATGACAGCT 1570
BSNT_04201___ 1571 TGTACGCTGAATATAAAGAGCTGGTTCATTATTTCGGAAAAGAAAACCAT 1620
|.||.|||||||||||||||||.||.||.||.|||||.|||||||||.||
RBAM_025850__ 1571 TATATGCTGAATATAAAGAGCTCGTACACTACTTCGGCAAAGAAAACAAT 1620
BSNT_04201___ 1621 GTCATGAAGCGTCTGAAAACGATCAAAAATCTTCAATTTTC--------- 1661
||||||||.||.||||||.|.||.|||||.|.|.|.|||.|
RBAM_025850__ 1621 GTCATGAAACGCCTGAAAGCCATTAAAAACCGTGATTTTGCGAAAGGGGG 1670
BSNT_04201___ 1662 -ATCTGCCGCCAAAAAGAATTGA 1683
| |||||| |...||||
RBAM_025850__ 1671 AA---GCCGCC----ATGCTTGA 1686
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