Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04198 and RBAM_025820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:36
# Commandline: needle
# -asequence dna-align/BSNT_04198___araM.1.9828.seq
# -bsequence dna-align/RBAM_025820___araM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04198___araM-RBAM_025820___araM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04198___araM-RBAM_025820___araM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04198___araM
# 2: RBAM_025820___araM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1271
# Identity: 810/1271 (63.7%)
# Similarity: 810/1271 (63.7%)
# Gaps: 172/1271 (13.5%)
# Score: 2304.5
#
#
#=======================================
BSNT_04198___ 1 ATGAATCGTATCGCAGCT---GACGTTCA--GCGTGCTTTTGAACACGCC 45
|||||.||| ||.| || |||.|||| .||.| |||| |||
RBAM_025820__ 1 ATGAAACGT-TCTC--CTGAGGACATTCAATCCGAG--TTTG-ACA---- 40
BSNT_04198___ 46 GGAGAAA------AGACG-TTGCCTATAAAAGTTGAAGAAATTGTTCTCG 88
||.|| ||.|| |..||.||..||.|.|||||.||.||..|||
RBAM_025820__ 41 --AGGAAGGGGCCAGCCGCTCACCGATTCAAATAGAAGATATCGTGATCG 88
BSNT_04198___ 89 ----GTAAGCAAGCAGCTGATTCGCTTTT--GGATTATGTAAAACGAAAA 132
|.|.|||| .||..|| ||||.| |..||.||.|||| ||||
RBAM_025820__ 89 GGGCGAATGCAA-AAGAAGA---GCTTCTCAGATTTCTGCAAAA--AAAA 132
BSNT_04198___ 133 AACTACAAACATATTGTCCTTGTTTGCGACGCGAATACACAC-------- 174
..||..||.|||...|||.|.||.||.|||..|||.||..||
RBAM_025820__ 133 TGCTGGAATCATCCGGTCATCGTCTGTGACCGGAACACGTACGAGGCGGC 182
BSNT_04198___ 175 --CGCAT-TGCAGGAATTGATTTAGAAAACCGACTGAAT------CAAGC 215
.||.| ||| ||| |.||| |||| ||.||
RBAM_025820__ 183 GGGGCGTCTGC-----TTG----------CGGAC-GAATTGAGGGCAGGC 216
BSNT_04198___ 216 AGGAT------TTCAGGCCGAGTGCCTGATCATTCCAGAAAATGAAGCCG 259
.|||| |||| |..| |.||.|||||.||..|||||||||
RBAM_025820__ 217 GGGATCAAAGCTTCA-----AAAG--TCATTATTCCGGAGCATGAAGCCG 259
BSNT_04198___ 260 GAGTTGTGACAGCTGATGA-ACGATCGCTCATT----CATGTGCTGATCC 304
|.|..|...|.|||||||| |.|| |||| .||..|||||||.
RBAM_025820__ 260 GGGCCGCCGCTGCTGATGAGAGGA-----CATTGGTCTATACGCTGATCA 304
BSNT_04198___ 305 AT---ACGAAACAAACAACGGATGTCATGATCGCAGTCGGTTCGGGCACG 351
|| .||.||.| .|||||||||||.||.||.|.||||.|.||.|||
RBAM_025820__ 305 ATCTCGCGGAAGA---GACGGATGTCATCATTGCGGCCGGTGCAGGAACG 351
BSNT_04198___ 352 ATTCATGATAT--CGTCCGCTTTGCGGCGTTTCAAAGAGATTTGCCGTTT 399
|||||.||.|| || ||.|||||.||.|..||..|.|..|||||||||
RBAM_025820__ 352 ATTCACGACATTACG--CGGTTTGCCGCCTACCAGCGCGGATTGCCGTTT 399
BSNT_04198___ 400 ATTTCTTATCCGACTGCTCCATCTGTAGACGGTTTTACATCAGCCGGTGC 449
||.||.|..||.||.|||||.||.||.|||||||||||.||.||.||.||
RBAM_025820__ 400 ATCTCATTCCCCACCGCTCCGTCAGTCGACGGTTTTACGTCGGCGGGAGC 449
BSNT_04198___ 450 GCCGATTATTTTATACGGCACGAAAACAACCATTCAAACGAAGGCCCCG- 498
||||.|.||.|||.||||.|..|||||.||.|||||||||||.||.|||
RBAM_025820__ 450 GCCGCTCATATTAAACGGAATCAAAACGACGATTCAAACGAAAGCGCCGA 499
BSNT_04198___ 499 TCTGCACTGTTCGCTGACCTGGATCTATTAAAAGCGGCACCCCAGTCAAT 548
|| ||..|.||.||.||...|.||.|||||||||..||.||||..|||||
RBAM_025820__ 500 TC-GCCTTATTTGCGGATACGAATGTATTAAAAGAAGCGCCCCGTTCAAT 548
BSNT_04198___ 549 GGTGGCGGCTGGATTTGGTGACATGCTCGGTAAAATAACATCTTTAGCAG 598
|...||.||.||.||.||.|||||||||||.|||||||||||..|.||||
RBAM_025820__ 549 GACAGCCGCGGGCTTCGGAGACATGCTCGGAAAAATAACATCGCTGGCAG 598
BSNT_04198___ 599 ATTGGGAAATATCCCGGCA-TCTTGCCGGCGAGCCTTATTC----GCCTG 643
|||||||.||.|||| ||| .|||||.||.|||||.||.|| |||
RBAM_025820__ 599 ATTGGGAGATTTCCC-GCAGGCTTGCGGGTGAGCCGTACTCAGAAGCC-- 645
BSNT_04198___ 644 CAGGAGCTAAGATCGTTCAGGAGGCGCTTGCTGCC--TGCATTGAACACA 691
||.||.|||.|.||..|.||.|||||| ||.| ||||||||.|||.
RBAM_025820__ 646 --GGGGCGAAGCTTGTGAAAGACGCGCTT--TGGCAGTGCATTGATCACC 691
BSNT_04198___ 692 CAGAAGACATTGCGATGAAAACGGAAACAGGCATACGGGTTTTGATGGAG 741
..|..|.||||||.|||..||||||..|.|||||.|.|.|..|||||||.
RBAM_025820__ 692 GCGCTGCCATTGCCATGGGAACGGAGGCCGGCATTCAGATACTGATGGAA 741
BSNT_04198___ 742 TCTTTACTTGTATCTGGGCTTGTCATGCTGGCATTAGATCATTCCCGCCC 791
.|..|..|.||.||.||.|||||||||||.||..|.||.||.||||||||
RBAM_025820__ 742 GCGCTGATCGTTTCGGGTCTTGTCATGCTTGCGCTTGACCACTCCCGCCC 791
BSNT_04198___ 792 GGCATCAGGCGGAGAGCATCATATATCACATTGGATTGAGATGGAATTAA 841
.||.|||||.|||||.|||||.||.||.||||||||||||||||||.|..
RBAM_025820__ 792 CGCCTCAGGAGGAGAACATCACATCTCGCATTGGATTGAGATGGAAATGC 841
BSNT_04198___ 842 TGGAGAAAAAACGGCCACAGATTCTTCATGGGGCAAAGGTGGGCTGTGC- 890
||.||..|||||.|||.|.||||||.||.||.||.|||||.||.|||||
RBAM_025820__ 842 TGAAGGCAAAACAGCCTCCGATTCTCCACGGTGCGAAGGTCGGTTGTGCG 891
BSNT_04198___ 891 -------AGCTGTTTTATTAACTGACACATACAGAAAGCTCGC---TCAG 930
.|||| |.|||.||.||||.|.|.||.|| |||.
RBAM_025820__ 892 TGCGCGGTGCTG--------AGTGATACTTACAAAGAACTGGCTTGTCAC 933
BSNT_04198___ 931 GATGA-CGGGCTGAA-------CGAATTTTCACCGAGCCGGCGGCAAGCC 972
||..| |..|||||| ||.|.|||| ||| |.||.
RBAM_025820__ 934 GAAAAGCTTGCTGAACTGCCGCCGCACTTTC---------GCG--AGGCG 972
BSNT_04198___ 973 ATCCAATCGGCTTATCAA--ACTCTCC---CGGAAGGAGAAGTGCTGGCT 1017
||.|||||.||.|||.|| .|| ||| |||.|.||.||.|||.||
RBAM_025820__ 973 ATTCAATCTGCATATGAAGGGCT-TCCTGACGGCAAGACAATTGCCGG-- 1019
BSNT_04198___ 1018 GATTGGCTGAGATCAGCCGGAGGCCCTGCGTATTTTGACGAAATCGGTGT 1067
.|||||...|||.||.|||||.||.||.|.|||.||.||.||||||||
RBAM_025820__ 1020 --GTGGCTCGCATCTGCGGGAGGTCCCGCCTGTTTCGATGAGATCGGTGT 1067
BSNT_04198___ 1068 CGGGCAGGATTCTGTCAAGAATGC-CTTCAGACACGCGCACACCTTAAGA 1116
....|||||...|||||...|||| |||.|| ||.||||||||..|.|||
RBAM_025820__ 1068 AAAACAGGACCTTGTCAGCGATGCGCTTAAG-CATGCGCACACACTGAGA 1116
BSNT_04198___ 1117 GACCGCTGCACCGGATTAAGAATCATTAATGAAAACAAAACGCTGAT--C 1164
|||||.|..|||||.||||..|||||.||||||||...|.||||..| |
RBAM_025820__ 1117 GACCGTTATACCGGTTTAACCATCATAAATGAAAATGCAGCGCTCTTTGC 1166
BSNT_04198___ 1165 AACCATGGTCTATATGAATAG 1185
| |||..|.|..||.|||||
RBAM_025820__ 1167 A--CATCATTTGCATCAATAG 1185
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