Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04187 and RBAM_025740
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:35
# Commandline: needle
# -asequence dna-align/BSNT_04187___ysfB.1.9828.seq
# -bsequence dna-align/RBAM_025740___ysfB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04187___ysfB-RBAM_025740___ysfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04187___ysfB-RBAM_025740___ysfB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04187___ysfB
# 2: RBAM_025740___ysfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1202
# Identity: 749/1202 (62.3%)
# Similarity: 749/1202 (62.3%)
# Gaps: 211/1202 (17.6%)
# Score: 2257.0
#
#
#=======================================
BSNT_04187___ 1 ATGTTTTTACAGCCGTTATTAGCGAAAAAAATTATTGCTGAAGTTAAAAA 50
|||...|||||||||..|.|.||.||.|||.|.|||||.|||||.|||.|
RBAM_025740__ 1 ATGCAGTTACAGCCGGAACTGGCTAAGAAATTGATTGCCGAAGTCAAACA 50
BSNT_04187___ 51 AATGTACGAACGTGAAGTCATTATTG----TAAACACGGACGGTCTTATT 96
.||||||...||.|||||.||||||| ||.|.|.||| .|.||.
RBAM_025740__ 51 TATGTACAGCCGCGAAGTGATTATTGCCGATACAAAAGGA----ATGATC 96
BSNT_04187___ 97 ATGGCAGGCACAAACGATGAGCGTGTCGGACAATTTCATGAGGGAGCGCT 146
||.||.|||||.|||||.|.|||.|.||||...||||||||.||.||.||
RBAM_025740__ 97 ATCGCGGGCACCAACGAGGCGCGCGCCGGATGGTTTCATGAAGGCGCACT 146
BSNT_04187___ 147 TATCTGCGCAAAAGAAAGACGCAGCGTGATTATTACAAAAGAAGATGAAA 196
.||||||||....||||.|||.|..||.||.|||||.|||||||||||||
RBAM_025740__ 147 GATCTGCGCGCGCGAAAAACGGAATGTCATCATTACGAAAGAAGATGAAA 196
BSNT_04187___ 197 CAAGGTTAAAAGGAGTGAAAGCAGGCATAAACCTCCCTGTATTTTTTGAC 246
.|.||.|..|.||.||.||||||||..|.||||||||.||.||||..|.|
RBAM_025740__ 197 AACGGCTCGAGGGCGTAAAAGCAGGACTGAACCTCCCCGTTTTTTCAGGC 246
BSNT_04187___ 247 CATGATGTGATTGCCGTCTTCGGGCTGACAGGTGAGCCTGCAGAGATTCA 296
|||||.|||||.|..||.|||||.||||||||.||.||||..||.||.|.
RBAM_025740__ 247 CATGAAGTGATCGGAGTATTCGGCCTGACAGGAGACCCTGACGATATCCT 296
BSNT_04187___ 297 GCCATTCGGAGAACTGCTTCGAAAAATGACAGAACTGTTCATTAAGGAAT 346
|||.|||||||||.||||..||||||||||.||.|||||.|||||.|||.
RBAM_025740__ 297 GCCTTTCGGAGAATTGCTCAGAAAAATGACGGAGCTGTTTATTAAAGAAA 346
BSNT_04187___ 347 CGCGGCACTTAGAGCAATCCCAGTGGCGTGAGAGAATGCTGGAGTCCTTT 396
||||.||..|.||..||.|.||||||||||.|||||||||.||.||||||
RBAM_025740__ 347 CGCGCCATATGGAAGAAGCGCAGTGGCGTGCGAGAATGCTTGAATCCTTT 396
BSNT_04187___ 397 ATGATCGATTGGCTGCAATTAAAGGAGTGGTCTCCCAGTTTTCTTGAGAA 446
|||.|.|||||||||||..|.||.||.||||||||..|.|||.|.||.||
RBAM_025740__ 397 ATGGTTGATTGGCTGCAGCTGAAAGAATGGTCTCCGGGCTTTTTAGAAAA 446
BSNT_04187___ 447 AGCTCAGCTTCTTGGTGTTGACCTTTCTTCCCG----GCGCCAAATGATT 492
|||..||||..|.||.|..||| ||||.|| .||||..||.||.
RBAM_025740__ 447 AGCAAAGCTCATCGGCGCAGAC----CTTCACGCATACCGCCGGATCATA 492
BSNT_04187___ 493 CTTATTCAGG---GGTATGAGTGGTCACCTCATGATATTGAACAAATGGC 539
||.|||||.| |.|||||| || |||| |||..|.
RBAM_025740__ 493 CTCATTCAAGGCCGTTATGAG---------CA--ATAT-----AAAGCGG 526
BSNT_04187___ 540 ACGCAGCT-----GGAAATCCTC-----GTA------CCCTGCGGATTTG 573
| |.|||| || ||| ||| |||||..||..||
RBAM_025740__ 527 A-GGAGCTCGGGCGG-----CTCTGGCAGTACGAATGCCCTGAAGACCTG 570
BSNT_04187___ 574 TTCATCAGGTGGGGAAATGAACGGATTTTGATTAATCATGAAGTGCCGCA 623
||..||.|.|||||||||||..|.|||.|.|||||||||||||
RBAM_025740__ 571 TTTGTCCGCTGGGGAAATGAGAGAATTCTCATTAATCATGAAG------- 613
BSNT_04187___ 624 GCATGAACAAAGGGATCGGCTTTTACGGAAAATCCTTCACATT----TGT 669
|||| .||||||| ..||||..|..|.|||| .|.
RBAM_025740__ 614 -------CAAA---TTCGGCTT----CCAAAACACAGCTCATTAAAAAGA 649
BSNT_04187___ 670 TCG--------TTTGCCAATACCGCAAGCAGCCAATATACAGCAGCTGGC 711
||| |||| .||||||..| || |.||.|||
RBAM_025740__ 650 TCGGAGCCGTTTTTG-----------GGCAGCCTGT---CA-CCGCCGGC 684
BSNT_04187___ 712 GCCGGAAGGGCTGT--CGCAAGCTCCAGCCTGACAGATTCATACGAGCAA 759
..||||.||...|| ||..||..| ||||.||.||.||||||||.||.
RBAM_025740__ 685 ATCGGACGGATCGTTCCGGGAGAGC--GCCTCACGGAATCATACGAACAG 732
BSNT_04187___ 760 GCGGAAAAAGCGCTGGCTGTCAGCCTTAA---GCGAAAAAC-GCCCATAT 805
||.||.||||| .||.||||||..|| |.||.||.| |.||.|.|
RBAM_025740__ 733 GCAGATAAAGC----ACTTTCAGCCGGAATCGGTGACAAGCAGGCCGTCT 778
BSNT_04187___ 806 TTGAAGAGGATCTGAAGCTTGATATGTGTCTGACGGAGATCAGCCCGGGA 855
|||||||.|||.|.||.||.|||||||||||..|.||.|||| .
RBAM_025740__ 779 TTGAAGAAGATTTAAAACTGGATATGTGTCTTGCCGATATCA-------C 821
BSNT_04187___ 856 ACCCGAAAC-------GAATTTCCGCAAAGAGTATTAGGAGAGGCG---- 894
||||...|| ||||||.|.| ||||
RBAM_025740__ 822 ACCCCGCACGAGGTCGGAATTTTCAC----------------GGCGGGTT 855
BSNT_04187___ 895 CTAGAGCAT------------CAGGAACTTATGAATACGTTACG-GACTT 931
||.|||||| .|.||||||.||.|||||.|.|| |.|||
RBAM_025740__ 856 CTCGAGCATGTACTCGGCCGGGAAGAACTTCTGGATACGCTGCGCGCCTT 905
BSNT_04187___ 932 TCTTTCATCACG--ATTTGTCTTTGAAACAAACCGCAGAAGATATGCATA 979
||||..| || |.||.||.||.||.|..|||||.||.||.|||||||
RBAM_025740__ 906 --TTTCGAC-CGGCAATTATCGTTAAAGCGCACCGCCGACGACATGCATA 952
BSNT_04187___ 980 TTCATATCAATACATTGCGTTATCGTCTGGCTAA---GG-----CTGA-A 1020
|||||||||||||||||||.||.|||||..|.|| || |||| |
RBAM_025740__ 953 TTCATATCAATACATTGCGCTACCGTCTTTCCAAACTGGAATCACTGACA 1002
BSNT_04187___ 1021 CAGCTGACGGGTTTACGTTTTGACCGTACCGAGGACATCGTCACG----- 1065
.|..|||.| .||||||||.||||.|||| |.|||
RBAM_025740__ 1003 AATATGAAG---------CTTGACCGTCCCGAAGACA---TAACGGCTTT 1040
BSNT_04187___ 1066 --ATGT-ACGTTGCCCTCTATTTTTTAGATCAAGATACAAAATAG----- 1107
||.| .||.|||.| ||||||||||||.|||||||| ||
RBAM_025740__ 1041 TTATTTGGCGCTGCGC-----TTTTTAGATCAACATACAAAA-AGAACGT 1084
BSNT_04187___ 1107 -- 1107
RBAM_025740__ 1085 AA 1086
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