Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04175 and RBAM_025690

See Amino acid alignment / Visit BSNT_04175 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:34
# Commandline: needle
#    -asequence dna-align/BSNT_04175___rnhC.1.9828.seq
#    -bsequence dna-align/RBAM_025690___rnhC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04175___rnhC-RBAM_025690___rnhC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04175___rnhC-RBAM_025690___rnhC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04175___rnhC
# 2: RBAM_025690___rnhC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 954
# Identity:     738/954 (77.4%)
# Similarity:   738/954 (77.4%)
# Gaps:          27/954 ( 2.8%)
# Score: 2778.0
# 
#
#=======================================

BSNT_04175___      1 GTGTCCCATTCAGTGATAAAAGTAT-CGTTGTCTGCTATTGACCAAATGA     49
                     |||||||||||.||.|||||||||| ||.| ||.|||||.||.|||||||
RBAM_025690__      1 GTGTCCCATTCTGTTATAAAAGTATCCGCT-TCCGCTATGGAACAAATGA     49

BSNT_04175___     50 A--AATGACATACAGCGGTTCGCTTACAGCCTCTGTTCCGCAGGGAGCCG     97
                     |  |||  |.||...|||.||.|||||..||.|.|||||||||||.||||
RBAM_025690__     50 AACAAT--CCTATGCCGGCTCCCTTACTCCCGCCGTTCCGCAGGGCGCCG     97

BSNT_04175___     98 TTTTTCAGGCGAAACCGCCCGGCTGTACCATTACAGCATATAAATCAGGC    147
                     |.||.|||||.||.||.||.|||||||||||||||||.||....||.|||
RBAM_025690__     98 TCTTCCAGGCCAAGCCTCCGGGCTGTACCATTACAGCCTACCGCTCGGGC    147

BSNT_04175___    148 AAGGTCTTGTTTCAAGGCAAAAACGCAGCGG--CAGAATCCGCGCGCTGG    195
                     |||||..|.||||||||.||||||||  |||  |||||.|.||.||||||
RBAM_025690__    148 AAGGTTCTCTTTCAAGGAAAAAACGC--CGGCACAGAAGCGGCCCGCTGG    195

BSNT_04175___    196 GGAACAGCAGA---GCCGGAAAAG--AAGAAAATGGCCAAAAAGCCGGCT    240
                     |||||.||.||   ||||  ||||  |||||||..|.||||||..||||.
RBAM_025690__    196 GGAACGGCTGAGGCGCCG--AAAGCAAAGAAAACCGTCAAAAAAGCGGCC    243

BSNT_04175___    241 GATCCCCGCTATGCCCCTCCGGCAGATATCGCCGGAATGTCTGTTATCGG    290
                     |||||.|.||||||.||.|||||.|..||.|||...|||||.||.|||||
RBAM_025690__    244 GATCCGCTCTATGCTCCCCCGGCGGGCATTGCCTCCATGTCAGTGATCGG    293

BSNT_04175___    291 TTCTGACGAAGTCGGAACCGGAGATTACTTTGGCCCAATGACGGTTGTAT    340
                     .|||||.|||||||||||.||.||||||||.||.||.||.|||||||..|
RBAM_025690__    294 CTCTGATGAAGTCGGAACAGGCGATTACTTCGGGCCGATAACGGTTGCCT    343

BSNT_04175___    341 GCGCGTACGTCGACAAAACCATGCTTCCTTTAATGAAGGAACTCGGTGTT    390
                     ||||.||||..||||||||.|.||||.||||||||||.|||||||||||.
RBAM_025690__    344 GCGCCTACGCAGACAAAACAAAGCTTTCTTTAATGAAAGAACTCGGTGTG    393

BSNT_04175___    391 AAGGATTCTAAAGATTTAAAAGATCCGCAAATCATCGAGATTGCCCGAAA    440
                     ||||||||.||.|||||||||||||||||.||.||.||.||.|||   ||
RBAM_025690__    394 AAGGATTCGAAGGATTTAAAAGATCCGCAGATTATTGAAATCGCC---AA    440

BSNT_04175___    441 CCTG---ATCAAAACCATTCCATATAGCCTGCTGGTTTTAAAAAATGAAA    487
                     .|||   ||.|||||||||||.||.||||||||.||.||||||||.||||
RBAM_025690__    441 ACTGTTAATTAAAACCATTCCTTACAGCCTGCTTGTGTTAAAAAACGAAA    490

BSNT_04175___    488 AGTATAA-CAGCATGCAGGAAAAAGGCATGAGCCAAGGGAAAATGAAAGC    536
                     |.||.|| ||| ||||||||||||||||||||||||||.||||||||.||
RBAM_025690__    491 AATACAATCAG-ATGCAGGAAAAAGGCATGAGCCAAGGAAAAATGAAGGC    539

BSNT_04175___    537 TTTGCTGCACAATCAGGCGATCACCCATTTATTAAGAAAATTGGATGGAG    586
                     ..|.||.||.|||||||||||..||.||.|..|.||||||.||.|.||.|
RBAM_025690__    540 GCTCCTTCATAATCAGGCGATTTCCAATCTGCTGAGAAAAATGAACGGCG    589

BSNT_04175___    587 TAAAGCCTGAAGCCATTTTGATTGACCAATTCGCTGAGCCAGGCGTCTAC    636
                     |.||.||.|||||.|||.||||||||||||||||.|||||.|||.|.||.
RBAM_025690__    590 TTAAACCGGAAGCGATTCTGATTGACCAATTCGCAGAGCCCGGCATTTAT    639

BSNT_04175___    637 TTCAATCAT-TTAAAGGGCAGAGACATTGTGAAGGAGCGGACCTATTTTA    685
                     ||.||.||| ||...||.| |.||.||.||.||.||....||.|.|||.|
RBAM_025690__    640 TTTAAGCATCTTTCCGGAC-GGGATATCGTAAAAGAAAAAACGTTTTTCA    688

BSNT_04175___    686 GCACAAAAGCTGAAGGTATTCACCTGGCTGTCGCCGCTGCTTCAATCATT    735
                     ||||.|||||.|||.|.||.||.||..|.||||||||.||.||.||||||
RBAM_025690__    689 GCACGAAAGCGGAAAGCATACATCTTTCCGTCGCCGCAGCCTCTATCATT    738

BSNT_04175___    736 GCAAGATATTCGTTTTTAATGGAAATGGATAAACTATCACGCGAGGCAGG    785
                     ||..|||||||.||.|||||.|||||||||||.||.||.||.|||||.||
RBAM_025690__    739 GCGCGATATTCTTTCTTAATTGAAATGGATAAGCTTTCCCGTGAGGCTGG    788

BSNT_04175___    786 AATGACGCTTCCAAAAGGGGCCGGTCCTCACGTCGATGAAGCGGCCGCCA    835
                     .||||||.||||||||||.||.||.||.||||||||||||||.|||||||
RBAM_025690__    789 GATGACGATTCCAAAAGGCGCGGGGCCGCACGTCGATGAAGCTGCCGCCA    838

BSNT_04175___    836 AGCTGATCCTCAAAAAAGGGGCATCTGCACTCAGAACCTTTACAAAACTC    885
                     ||||||||.||||.||.||.|.|..|||.||||||||.||.||.|||||.
RBAM_025690__    839 AGCTGATCATCAATAAGGGAGAAGGTGCGCTCAGAACGTTCACCAAACTT    888

BSNT_04175___    886 CATTTCGCCAATACGCAAAAAGCGCAGCGCCTTGCTGATAAAAAACGTTC    935
                     |||||.||||||||||||||||||.|.|||||||.|||....||.||.||
RBAM_025690__    889 CATTTTGCCAATACGCAAAAAGCGAAACGCCTTGTTGAACGGAAGCGGTC    938

BSNT_04175___    936 ATAG    939
                     |||.
RBAM_025690__    939 ATAA    942


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04175 and RBAM_025690

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
