Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04173 and RBAM_025670

See Amino acid alignment / Visit BSNT_04173 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:34
# Commandline: needle
#    -asequence dna-align/BSNT_04173___yshB.1.9828.seq
#    -bsequence dna-align/RBAM_025670___yshB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04173___yshB-RBAM_025670___yshB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04173___yshB-RBAM_025670___yshB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04173___yshB
# 2: RBAM_025670___yshB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity:     403/538 (74.9%)
# Similarity:   403/538 (74.9%)
# Gaps:           8/538 ( 1.5%)
# Score: 1446.0
# 
#
#=======================================

BSNT_04173___      1 ATGCTAGATATCATCATCTTAATCTTGCTCCTGATGGGGACTTTACTGGG     50
                     |||.|||||||||||||||||.|.||||||.|.|||||.||.||.||.||
RBAM_025670__      1 ATGATAGATATCATCATCTTAGTTTTGCTCTTAATGGGCACATTGCTTGG     50

BSNT_04173___     51 GTTAAAACGCGGTTTTATCCTGCAGTTTATCCGCTTGACGAGCTTTATTT    100
                     .||||||.|.||.||||||||.||.|||||....||.|||||.||.||..
RBAM_025670__     51 ATTAAAAAGAGGATTTATCCTCCAATTTATATATTTAACGAGTTTCATCC    100

BSNT_04173___    101 TATCAATTGCCTTTGCGGCTTTATTCTATAAAAACGTGGCACCGCATTT-    149
                     |.||.|||||.||||||||..|.||.||.||||||.||||.||||||.| 
RBAM_025670__    101 TCTCGATTGCGTTTGCGGCGCTTTTTTACAAAAACCTGGCCCCGCATCTG    150

BSNT_04173___    150 -ACATTGGATTCCCGCACCCGATTTTT-CAGCGGGACAGCCGGCTCTTTC    197
                      .|.||  ||.|||||.||.||||||| |.||||| |||.|||||.|.||
RBAM_025670__    151 AGCTTT--ATACCCGCGCCTGATTTTTCCGGCGGG-CAGGCGGCTTTGTC    197

BSNT_04173___    198 TTTTTTTACGGGGAATTTGGAAGCAGCGTACTATAATGCGATTGCGTTTA    247
                     ||||.|||..||.||..|.||..|.||.||.||.||.|||||.||||||.
RBAM_025670__    198 TTTTATTAAAGGAAACGTAGAGACGGCTTATTACAACGCGATCGCGTTTG    247

BSNT_04173___    248 TCGTTTTATTTATCATTGCTAAAATCTTACTGAGAATCATCGGCTC-GTT    296
                     ||.||||.||||||||.||.||.||..|.||..|.||.|||||..| |..
RBAM_025670__    248 TCATTTTGTTTATCATCGCAAAGATTCTGCTCCGGATTATCGGAGCGGCG    297

BSNT_04173___    297 CTTGAGTATTGTCGCCGGCATTCCGGTGATCAAACAAATCAACCAATTGC    346
                     ||| |.|||..|||||.||||||||||.||.|||||.||||||.||.|||
RBAM_025670__    298 CTT-AATATCATCGCCAGCATTCCGGTCATTAAACAGATCAACAAACTGC    346

BSNT_04173___    347 TGGGCGCCGTTCTCGGTTTTCTAGAAGTCTATTTATTTACATTTGTGCTG    396
                     ||||||..||.||.||.|||||.|||||||||||||||.|.|||.|.|||
RBAM_025670__    347 TGGGCGGGGTGCTTGGGTTTCTGGAAGTCTATTTATTTGCGTTTATCCTG    396

BSNT_04173___    397 CTGTATGTCGCATCCGTTCTGCCGGTAGATGCACTGCAGCAAATGATGGG    446
                     .|.||.|||||||||||.|||||||||...||.||.|||.|.|||.|.|.
RBAM_025670__    397 TTATACGTCGCATCCGTACTGCCGGTAAGCGCGCTTCAGGATATGCTCGC    446

BSNT_04173___    447 GCAATCGTCCCTCGCAAATGTGATCATTAACCATACACCATACTTGTCAG    496
                     .||||||.|.||.||||||.|.||||...|.|||||.||.||..||||||
RBAM_025670__    447 ACAATCGACGCTTGCAAATATCATCACACATCATACGCCGTATCTGTCAG    496

BSNT_04173___    497 GGCTCCTACAAGAGCTGTGGACACAGTACGGGGCATAA    534
                     |||||||.|||||.||||||.|.|||||||||||||||
RBAM_025670__    497 GGCTCCTGCAAGAACTGTGGGCCCAGTACGGGGCATAA    534


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