Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04171 and RBAM_025650
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:34
# Commandline: needle
# -asequence dna-align/BSNT_04171___mutSB.1.9828.seq
# -bsequence dna-align/RBAM_025650___mutSB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04171___mutSB-RBAM_025650___mutSB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04171___mutSB-RBAM_025650___mutSB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04171___mutSB
# 2: RBAM_025650___mutSB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2382
# Identity: 1888/2382 (79.3%)
# Similarity: 1888/2382 (79.3%)
# Gaps: 48/2382 ( 2.0%)
# Score: 7480.0
#
#
#=======================================
BSNT_04171___ 1 GTGCAGCAAAAAGTATTATCAGCTCTTGAATTTCATAAAGTGAAAGAACA 50
||||||||||||||.||||||.|.|||||||||||||||||.||||||||
RBAM_025650__ 1 GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACA 50
BSNT_04171___ 51 GGTTATTGGGCATGCCGCTTCATCGCTCGGAAAAGAAATGCTTCTCGAGC 100
|.|||..|..||||||||.|||||||||||....||.|.||||||..|||
RBAM_025650__ 51 GATTACCGCACATGCCGCCTCATCGCTCGGCCGGGAGAAGCTTCTGCAGC 100
BSNT_04171___ 101 TTAAGCCTT---CTGCT-TCTATAGACGAAATTAAAAAACAGCTGGATGA 146
|.||.|||| |.|.| ||| .|||| ||..||||||||||||||||
RBAM_025650__ 101 TGAAACCTTTGACGGATCTCT-CAGAC---ATCCAAAAACAGCTGGATGA 146
BSNT_04171___ 147 AGTAGACGAAGCTTCTGACATTATCCGGCTGAGAGGCCAAGCGCCATTTG 196
|||.||.|||||.||.|...|.||.||..||||||||||.||.||.||.|
RBAM_025650__ 147 AGTCGAAGAAGCATCCGCGGTCATGCGCTTGAGAGGCCATGCTCCGTTCG 196
BSNT_04171___ 197 GCGGCCTTGTAGATATCAGAGGAGCGTTAAGACGGGCGGAAATCGGCAGC 246
|||||||....||.||.|||...||.|||.|.|||||||||||||||||.
RBAM_025650__ 197 GCGGCCTGACCGACATAAGATCCGCTTTACGGCGGGCGGAAATCGGCAGT 246
BSNT_04171___ 247 GTTCTCAGTCCTTCTGAATTCACTGAAATCTCAGGCCTGCTTTATGCAGT 296
||.||.|..||..|.|||||.||.|||.|.||.||.|||||.|||||.||
RBAM_025650__ 247 GTGCTGACGCCGGCGGAATTTACCGAATTGTCCGGGCTGCTGTATGCCGT 296
BSNT_04171___ 297 TAAACAAATGAAACATTTTATCACCCAAATGGCTGAAGACGGTGTCGACA 346
||||||||||||.||||||||||.|||||||.|.||||||||.||||.||
RBAM_025650__ 297 TAAACAAATGAAGCATTTTATCAGCCAAATGACAGAAGACGGCGTCGGCA 346
BSNT_04171___ 347 TTCCGCTGATCCATCAGCATGCTGAACAGCTTATCACGCTGTCCGATTTA 396
||||||||||.||....|||||.|||.||||.||.||..|...||||||.
RBAM_025650__ 347 TTCCGCTGATACAGGCCCATGCAGAAGAGCTGATTACATTAGGCGATTTG 396
BSNT_04171___ 397 GAGCGGGACATTAATTCCTGCATTGATGATCACGGAGAAGTGCTTGATCA 446
||..||||.|||||.||||||||||||||.||.||.||||||||||||||
RBAM_025650__ 397 GAAAGGGAGATTAACTCCTGCATTGATGACCATGGGGAAGTGCTTGATCA 446
BSNT_04171___ 447 TGCAT----CGGAAACATTAAGAGGAATCCGCACACAGCTCAGAACACTC 492
|||.| || |.|||||.|||||||||||.||||||||.||.||.
RBAM_025650__ 447 TGCGTCTCCCG----CTTTAAGGGGAATCCGCACGCAGCTCAGGACGCTT 492
BSNT_04171___ 493 GAATCAAGAGTCAGAGACCGGTTAGAGTCGATGCTGCGTTCCTCTTCCGC 542
|||||||||||||||||||||.|.||.||.|||||||||||.||||||||
RBAM_025650__ 493 GAATCAAGAGTCAGAGACCGGCTTGAATCAATGCTGCGTTCATCTTCCGC 542
BSNT_04171___ 543 TTCGAAAATGCTGTCTGATACGATTGTTACGATTCGGAATGACCGCTTTG 592
|||.||||||||||||||.||.||.|||||||||||||||||||||||||
RBAM_025650__ 543 TTCTAAAATGCTGTCTGACACCATCGTTACGATTCGGAATGACCGCTTTG 592
BSNT_04171___ 593 TGATCCCGGTCAAACAGGAGTACAGATCCAGCTATGGAGGAATTGTGCAC 642
|.|||||||||||||||||.||||||||.|||||.||.||||||||.|||
RBAM_025650__ 593 TCATCCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGAATTGTCCAC 642
BSNT_04171___ 643 GACACCTCATCCTCTGGTGCGACATTATTCATTGAACCGCAGGCGATTGT 692
||.||.||.||.||.|||||||||.|.||.|||||||||||||||||.||
RBAM_025650__ 643 GATACATCTTCATCCGGTGCGACACTGTTTATTGAACCGCAGGCGATCGT 692
BSNT_04171___ 693 AGATATGAACAATTCCCTTCAGCAGGCGAAAGTGAAAGAAAAGCAAGAAA 742
||||||||||||.||.|||||||||||||||||.||||||||.||.||||
RBAM_025650__ 693 AGATATGAACAACTCGCTTCAGCAGGCGAAAGTAAAAGAAAAACAGGAAA 742
BSNT_04171___ 743 TTGAACGGATTTTGCGTGTGCTGACAGAGAAAACGGCAGAGTATACAGAG 792
|.|||||||||.|.||..|||||||.|||.|.|||||.||..|.|||.|.
RBAM_025650__ 743 TCGAACGGATTCTCCGAATGCTGACGGAGCATACGGCTGAACACACACAA 792
BSNT_04171___ 793 GA----GCTATTTCTAGATTTGCAAGTGCTGCAGACGCTTGACTTTATTT 838
|| || ||.||||.||.|||||||||||||.||.||.||.||||
RBAM_025650__ 793 GAAATCGC----TCAAGATGTGGAAGTGCTGCAGACACTGGATTTCATTT 838
BSNT_04171___ 839 TTGCAAAAGCTAGATATGCAAAAGCGGTTAAAGCGACAAAACCGATTATG 888
|.||.|||||.|||||.|||||||||.|.||.|||||||||||..|.|||
RBAM_025650__ 839 TCGCCAAAGCGAGATACGCAAAAGCGATGAAGGCGACAAAACCACTCATG 888
BSNT_04171___ 889 AAC-GACACCGGCTTTATCCGTTTGAAAAAAGCCCGCCATCCATTGCTTC 937
||| ||.| |||.||||||||..||||||||||.||||||||..||||.|
RBAM_025650__ 889 AACGGAGA-CGGTTTTATCCGGCTGAAAAAAGCGCGCCATCCGCTGCTGC 937
BSNT_04171___ 938 CGCCTGACCAGGTTGTTGCCAATGACATCGAGCTTGGCCGCGATTTTTCA 987
|.|..||.||.||.||.|||||.||.||.||.||.|||.|.||||..|||
RBAM_025650__ 938 CCCAAGATCAAGTCGTGGCCAACGATATTGAACTGGGCGGAGATTACTCA 987
BSNT_04171___ 988 ACCATTGTCATCACAGGGCCAAACACCGGGGGGAAAACAGTCACCCTTAA 1037
||.||.||.||||||||.||.||.||.||.||.|||||.||.||..|.||
RBAM_025650__ 988 ACGATCGTTATCACAGGACCGAATACGGGCGGTAAAACCGTTACGTTAAA 1037
BSNT_04171___ 1038 AACGTTAGGCCTGCTAACCTTAATGGCGCAATCAGGTCTTCATATCCCGG 1087
|||..|.||.|||||.||..||||||||||..|.||..|.||.||.||||
RBAM_025650__ 1038 AACACTCGGGCTGCTGACGATAATGGCGCAGGCGGGATTGCACATACCGG 1087
BSNT_04171___ 1088 CAGATGAAGGGTCAGAAGCGGCAGTATTTGAGCACGTATTCGCTGATATC 1137
|.|||||.||.||.|||||.||.||||||||..|.||.||.||.||||||
RBAM_025650__ 1088 CTGATGAGGGATCGGAAGCAGCCGTATTTGACAATGTGTTTGCCGATATC 1137
BSNT_04171___ 1138 GGTGATGAACAGTCGATTGAGCAAAGTTTAAGTACGTTCTCATCCCATAT 1187
||.||||||||||||||.||.||||||.|.|||||||||||||||||.||
RBAM_025650__ 1138 GGCGATGAACAGTCGATCGAACAAAGTCTGAGTACGTTCTCATCCCACAT 1187
BSNT_04171___ 1188 GGTGAACATTGTCGGCATTTTAGAACAGGTCAATGAAAACAGCCTTGTGC 1237
|||.||.||.|||...||||||.||.|.||...|||||||||.|||||||
RBAM_025650__ 1188 GGTCAATATCGTCAATATTTTAAAAGACGTGTCTGAAAACAGTCTTGTGC 1237
BSNT_04171___ 1238 TTTTCGATGAACTTGGTGCAGGGACAGATCCGCAGGAGGGGGCGGCCCTC 1287
|.||.||||||||.|||||.||.||||||||||||||.||.|||||.||.
RBAM_025650__ 1238 TGTTTGATGAACTCGGTGCCGGAACAGATCCGCAGGAAGGAGCGGCGCTT 1287
BSNT_04171___ 1288 GCCATGAGCATCTTGGATGACGTGCATCGCACCAATGCACGAGTGTTAGC 1337
||||||||||||.|.||.||.||.||.||.||.||.||..|||||.|.||
RBAM_025650__ 1288 GCCATGAGCATCCTTGACGAAGTTCACCGGACAAACGCCAGAGTGCTTGC 1337
BSNT_04171___ 1338 TACGACGCATTATCCGGAATTGAAGGCGTACGGCTATAACAGAGAAGGCG 1387
.||.||.||||||||||||.||||.||.|||||.|||||||||.||||||
RBAM_025650__ 1338 GACAACCCATTATCCGGAACTGAAAGCATACGGATATAACAGACAAGGCG 1387
BSNT_04171___ 1388 TCATGAATGCCAGCGTTGAATTTGACATCGAAACGCTGTCACCGACCTAT 1437
||||||||||||||||||||||||||||.||||||||.||.||.||||||
RBAM_025650__ 1388 TCATGAATGCCAGCGTTGAATTTGACATTGAAACGCTTTCGCCTACCTAT 1437
BSNT_04171___ 1438 AAACTTTTAATTGGTGTGCCGGGTCGAAGCAATGCTTTCGAAATTTCAAA 1487
||.|||.|.||.||.||||||||.||||||||.||.||.|||||.||||.
RBAM_025650__ 1438 AAGCTTCTGATCGGAGTGCCGGGCCGAAGCAACGCATTTGAAATCTCAAG 1487
BSNT_04171___ 1488 ACGCCTCGGGCTTCCGGACCATATCATCGGGCAGGCGAAGTCAGAAATGA 1537
||||||.|||||||||||.|||||||||||.|||||||||||||||||||
RBAM_025650__ 1488 ACGCCTTGGGCTTCCGGAGCATATCATCGGCCAGGCGAAGTCAGAAATGA 1537
BSNT_04171___ 1538 CGGCCGAGCATAACGAAGTCGATACGATGATTGCGTCGCTGGAACAAAGC 1587
|.|||||.|||||||||||||||..||||||.||.|||||.|||.|||||
RBAM_025650__ 1538 CCGCCGAACATAACGAAGTCGATCTGATGATCGCATCGCTTGAAAAAAGC 1587
BSNT_04171___ 1588 AAAAAACGTGCGGAAGAAGAGCTTTCTGAGACAGAATCAATCAGAAAAGA 1637
||||||.|.|||||.||||||||||||||.||.|||||||||||||||||
RBAM_025650__ 1588 AAAAAAAGAGCGGATGAAGAGCTTTCTGAAACCGAATCAATCAGAAAAGA 1637
BSNT_04171___ 1638 AGCGGAAAAACTGCATAAAGAGCTGCAGCAGCAAATCATCGAGCTTAACA 1687
|||.|||||||||||.|||||.||.||||||||||||||.|||||.|||.
RBAM_025650__ 1638 AGCAGAAAAACTGCACAAAGATCTTCAGCAGCAAATCATTGAGCTGAACG 1687
BSNT_04171___ 1688 GCAAAAAAGACAAAATGCTTGAAGAGGCAGAACAGCAGGCTGCTGAAAAA 1737
.|.|||||||.||||||.|.|||||.||.||||||.|.|||||.||||||
RBAM_025650__ 1688 CCCAAAAAGATAAAATGATGGAAGAAGCCGAACAGAAAGCTGCGGAAAAA 1737
BSNT_04171___ 1738 GTAAAAGCGGC----AATGAAAGAAGCCGAGGACATTATTCATGAATTGC 1783
.|..||||.|| ||| ||||||||..|.||.||.|..|| ||
RBAM_025650__ 1738 CTGGAAGCCGCCGCAAAT----GAAGCCGAACAGATCATCCGCGA---GC 1780
BSNT_04171___ 1784 GCA---CCATAAAAGAAGAACACAAATCCTTCAAGGATCACGAGCTGATT 1830
.|| ||||.||..|||||||||.||||||.|||||.||||||||||||
RBAM_025650__ 1781 TCAGGTCCATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATT 1830
BSNT_04171___ 1831 AACGCGAAGAAACGGTTAGAAGGCGCTATGCCGGCTTTTGAAAAGTCCAA 1880
.||||.||.|||||..|.|.||.|||.|||||||||||||||||.||.||
RBAM_025650__ 1831 GACGCCAAAAAACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAA 1880
BSNT_04171___ 1881 GAAACCGGAAAAACCGAA----AGCGCAAAAACGCGACTTTAAGCCTGGC 1926
|.|.||||||| ||| ||.|.||||||||||..|.|||||.|||
RBAM_025650__ 1881 GCAGCCGGAAA----GAAAAACAGAGAAAAAACGCGAGCTGAAGCCGGGC 1926
BSNT_04171___ 1927 GACGAGGTGAAAGTCCTCACTTTCGGGCAAAAAGGAACATTGCTCGAAAA 1976
|||||.||.||.||.|||||.|||||.||||||||..|..||||.||.||
RBAM_025650__ 1927 GACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAGAA 1976
BSNT_04171___ 1977 AACAGGCGGCAATGAATGGAATGTTCAAATCGGTATTTTAAAGATGAAAG 2026
|||.||||..||.||||||||.||.||||||||.||..|.||.|||||.|
RBAM_025650__ 1977 AACCGGCGAGAAAGAATGGAACGTCCAAATCGGCATCCTCAAAATGAAGG 2026
BSNT_04171___ 2027 TAAAAGAAAAAGATCTGGAGTTTATCAAATCAGCTCCGGAGCAAAAAAAA 2076
|.||.|||||||||||.||||||.||||.||.|||||.||.|..||||||
RBAM_025650__ 2027 TGAAGGAAAAAGATCTTGAGTTTCTCAAGTCCGCTCCTGAACCGAAAAAA 2076
BSNT_04171___ 2077 GAAAAAATCATTACAGCGGTCAAGGGAAAGGACTATCACGTATCGCTTGA 2126
||||||...||.||.||.||.||.||.|||||.|||||||||||.|||||
RBAM_025650__ 2077 GAAAAAGCAATCACCGCCGTAAAAGGGAAGGATTATCACGTATCCCTTGA 2126
BSNT_04171___ 2127 ACTTGATCTCCGCGGCGAACGCTATGAAAATGCCCTCAGCCGGGTTGAAA 2176
||||||.|||.|.||.||.||.||.|||||.|||||||||||.||.||||
RBAM_025650__ 2127 ACTTGACCTCAGGGGAGAGCGTTACGAAAACGCCCTCAGCCGCGTCGAAA 2176
BSNT_04171___ 2177 AATACTTGGATGATGCGGTGTTAGCCGGATATCCAAGAGTGTCAATCATC 2226
||||.||.|||||.||||||.|.|||||..||||.||||||||.|||||.
RBAM_025650__ 2177 AATATTTAGATGACGCGGTGCTTGCCGGCCATCCGAGAGTGTCCATCATT 2226
BSNT_04171___ 2227 CACGGAAAAGGAACCGGCGCTTTAAGAAAAGGCGTACAGGATCTTCTGAA 2276
|||||||||||.||.|||||..|..|||||||.||.||||||||||||||
RBAM_025650__ 2227 CACGGAAAAGGCACGGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAA 2276
BSNT_04171___ 2277 AAACCACCGCAGCGTCAAAAGTTCCCGTTTCGGTGAAGCAGGTGAGGGAG 2326
|||||||||||||||.|||||.||.||.|||||.|||||.||.||.||||
RBAM_025650__ 2277 AAACCACCGCAGCGTGAAAAGCTCGCGGTTCGGGGAAGCGGGAGAAGGAG 2326
BSNT_04171___ 2327 GATCAGGCGTTACGGTTGTTGAACTAAAATAA 2358
||||||||||.|||.||||.||||||||||||
RBAM_025650__ 2327 GATCAGGCGTAACGATTGTCGAACTAAAATAA 2358
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