Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04164 and RBAM_025590

See Amino acid alignment / Visit BSNT_04164 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:33
# Commandline: needle
#    -asequence dna-align/BSNT_04164___etfB.1.9828.seq
#    -bsequence dna-align/RBAM_025590___etfB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04164___etfB-RBAM_025590___etfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04164___etfB-RBAM_025590___etfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04164___etfB
# 2: RBAM_025590___etfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 788
# Identity:     635/788 (80.6%)
# Similarity:   635/788 (80.6%)
# Gaps:          28/788 ( 3.6%)
# Score: 2528.0
# 
#
#=======================================

BSNT_04164___      1 ATGAATCTATTTGTACTGATGAAACGGACGTTTGACACAGAAGAAAAAAT     50
                     ||||||||||||||||||||||||||||||||||||||||||||.|||||
RBAM_025590__      1 ATGAATCTATTTGTACTGATGAAACGGACGTTTGACACAGAAGAGAAAAT     50

BSNT_04164___     51 CGTCATTGAAACAGGAAAGATTCAGGATGACGGAGCGGAATGGATCATTA    100
                     ||||||||||.||||||||||||||||.|||||.||.||||..|||||||
RBAM_025590__     51 CGTCATTGAAGCAGGAAAGATTCAGGAGGACGGGGCCGAATTTATCATTA    100

BSNT_04164___    101 ATCCATATGATGAGTACGCGATAGAAGAAGCCATCCAGCTGAAGGAAAAG    150
                     ||||.||||||||.|||||.||.|||||||||||.||||||||||||.||
RBAM_025590__    101 ATCCGTATGATGAATACGCCATTGAAGAAGCCATTCAGCTGAAGGAAGAG    150

BSNT_04164___    151 CATGGCGGCACGATCACCGCCGTCACGGTCGGCGGTGAAGAAGCGGAGAA    200
                     ||.|||||.||..|.||||||||.||.||||||||.|||||.||||||||
RBAM_025590__    151 CACGGCGGAACCGTTACCGCCGTAACCGTCGGCGGAGAAGATGCGGAGAA    200

BSNT_04164___    201 AGAATTGCGTACGGCGCTTGCCATGGGTTGTGACCAAGCTGTTTTAATCA    250
                     ||||.||.|.||.||.|||||.|||||.||||||||.||.||.|||||||
RBAM_025590__    201 AGAACTGAGAACCGCCCTTGCGATGGGCTGTGACCAGGCGGTGTTAATCA    250

BSNT_04164___    251 ACATAGAAGATGATCTTGA-AGAACCCGACCAATATTCCATTTCTCAA--    297
                     |.||.|||||||||| ||| .||.||.||||||||.||||||  ||||  
RBAM_025590__    251 ATATTGAAGATGATC-TGAGCGATCCTGACCAATACTCCATT--TCAACT    297

BSNT_04164___    298 GTTTTATACCACTATATGAAGGATCAGGAGTTTGATTTGATTCTCGGCGG    347
                     .|.|||||.||.|||.|.|||||.|.|||.|.||||.|||||||||||||
RBAM_025590__    298 ATCTTATATCATTATTTCAAGGACCGGGAATATGATCTGATTCTCGGCGG    347

BSNT_04164___    348 AAATGTTGCCATTGACGGAGGATCAGGACAAGTGGCGCCTCGGCTTGCCG    397
                     ||||||.||.||||||||.||.|||||.||||||||.||..|||||||||
RBAM_025590__    348 AAATGTCGCGATTGACGGCGGTTCAGGCCAAGTGGCTCCAAGGCTTGCCG    397

BSNT_04164___    398 AGCTACTGGACATTCCGTGTATCACTACGATCACCAAACTCGA-AATCAA    446
                     |.||.|||.|||||||.||..||||.||||||||.||||| || |||||.
RBAM_025590__    398 AACTGCTGAACATTCCTTGCGTCACAACGATCACAAAACT-GACAATCAG    446

BSNT_04164___    447 CGGCACTGATGCAGAAGC--------AGAAAGGGACGTCGAAGGGGATGT    488
                     |||   ||||   |||||        |||||  |||...|||||||||..
RBAM_025590__    447 CGG---TGAT---GAAGCTGTGGCAGAGAAA--GACAATGAAGGGGATAC    488

BSNT_04164___    489 TGAAAAAATCAAAACGACGCTCCCATTGCTTGTCACAGCTCAGCAGGGCT    538
                     .||||..||.|||||..|.||.||.||..|..||||.||.|||||.||||
RBAM_025590__    489 CGAAATCATTAAAACCTCACTTCCTTTAGTCATCACGGCACAGCAAGGCT    538

BSNT_04164___    539 TAAACGAGCCGCGCTATCCATCGCTTCCGGGAATTATGAAGGCTAAGAAA    588
                     |||||||||||||||||||.|||||||||||.|||||||||||.||||||
RBAM_025590__    539 TAAACGAGCCGCGCTATCCGTCGCTTCCGGGCATTATGAAGGCGAAGAAA    588

BSNT_04164___    589 AAGCCGCTTGAAGAGCTTGAACTTGATGATCTTGACCTGGACGAAGAGGA    638
                     ||.|||||.|||||.|||||.||.|||||.||.|||.|.||.|||||.||
RBAM_025590__    589 AAACCGCTGGAAGAACTTGAGCTCGATGACCTCGACATTGATGAAGATGA    638

BSNT_04164___    639 TGCTGAACCAAAGCTGAAAACCATTGAACGTTTTCTGCCGCCGAAAAAAG    688
                     |||.|.|||.|||||.|||||.||.||||||||||||||||||.||||||
RBAM_025590__    639 TGCCGCACCGAAGCTCAAAACGATCGAACGTTTTCTGCCGCCGCAAAAAG    688

BSNT_04164___    689 AAGCCGGGAAG-CTTCTCCAAGGTG-AGCCTGCTGAACAGGCAAAAGAGC    736
                     ||| ||||.|| ||..||.||||.| |||| |||||.|||||.|||||||
RBAM_025590__    689 AAG-CGGGCAGACTGATCGAAGGAGAAGCC-GCTGAGCAGGCGAAAGAGC    736

BSNT_04164___    737 TTGTTTCATTGCTCCGCAGCGAAGCTAAAGTCATTTAA    774
                     ||||.|||.||||..|.|..|||||.||||||.|.|||
RBAM_025590__    737 TTGTGTCACTGCTGAGAAAAGAAGCCAAAGTCGTATAA    774


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