Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04162 and RBAM_025580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:33
# Commandline: needle
# -asequence dna-align/BSNT_04162___etfA.1.9828.seq
# -bsequence dna-align/RBAM_025580___etfA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04162___etfA-RBAM_025580___etfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04162___etfA-RBAM_025580___etfA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04162___etfA
# 2: RBAM_025580___etfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1013
# Identity: 738/1013 (72.9%)
# Similarity: 738/1013 (72.9%)
# Gaps: 70/1013 ( 6.9%)
# Score: 2654.5
#
#
#=======================================
BSNT_04162___ 1 ATGGGAAAAAAAGTGATCGTGCTTGGAGAAATACGCGATGGGGAATTGCG 50
||||||||||||||||||||.||.||||||||.||.||.||.|..||.||
RBAM_025580__ 1 ATGGGAAAAAAAGTGATCGTACTCGGAGAAATTCGTGACGGCGCCTTACG 50
BSNT_04162___ 51 GAATGTCACCTTTGAAGCAATAGCTGCAGGAAGAACCATTTCAGGAGATG 100
|||.||||||||||||||.|||||.|||||.|.|||||||||.||.| |
RBAM_025580__ 51 GAACGTCACCTTTGAAGCCATAGCCGCAGGCAAAACCATTTCCGGCG--G 98
BSNT_04162___ 101 GGGAA--GTCATCGGTGTTCTCATCGGTGAAAATGTACA----AAGCATT 144
.|||| ||||||||.||.||.|| |.|||||.|..|| |.|||
RBAM_025580__ 99 AGGAAATGTCATCGGCGTGCTGAT--GGGAAAAGGCGCAGCTGATGCA-- 144
BSNT_04162___ 145 GCACAAGAGCTTATTCATTACGGAGCAGATAAAGTTCTTACCGCTGAGGA 194
||||.|||.||.|||||.|||||.||.||.|||||..||||.||.||...
RBAM_025580__ 145 GCACCAGAACTCATTCAGTACGGCGCCGACAAAGTATTTACGGCCGATTC 194
BSNT_04162___ 195 CCCGAAGCT------GAAAACATACACGGCAGACGGGTA--CAGCCAGGT 236
.|||..||| | ||.|||||.|||||.|| |.|| |||
RBAM_025580__ 195 GCCGGGGCTTTCTCAG------TATACGGCGGACGGATATGCCGC--GGT 236
BSNT_04162___ 237 CATGAGAGGTGTTATCGAGCAAGAAAATCCTGATTCAGTCATCTTCGGGC 286
..|..|.|.|.|.|||||..|.|||||.||||||.|.||.||.|||||.|
RBAM_025580__ 237 TCTCGGGGATTTGATCGAAAATGAAAAGCCTGATGCGGTTATTTTCGGCC 286
BSNT_04162___ 287 ATACGGCAATGGGCAAGGATCTTTCACCGAAGCTTGCTGCCCGGCTGCAA 336
|.||..|.|||||.||.|||.|.|||||.||||||||.||||||.|..||
RBAM_025580__ 287 ACACTTCTATGGGAAAAGATTTGTCACCTAAGCTTGCGGCCCGGTTTGAA 336
BSNT_04162___ 337 ACAGGCTTAATTTCTGA-TGCTATAGATGTAAGCGTTACCGGAGGGAATG 385
||.||..|.|||||.|| .|| |..|||||||||||||||||||..||..
RBAM_025580__ 337 ACGGGGCTGATTTCAGACAGC-ACGGATGTAAGCGTTACCGGAGACAACA 385
BSNT_04162___ 386 TTGTGTTCACACGGCCGATTTACTCGGGGAAAGCTTTTGAACGCGTCATT 435
|.||.||.|||.|.|||||.||.||.||.|||||.|||||||..||.|||
RBAM_025580__ 386 TCGTTTTTACAAGACCGATCTATTCCGGCAAAGCCTTTGAACAGGTGATT 435
BSNT_04162___ 436 TCAACCGATCCGATGATCTTTGCAACAATTCGCCCCAATAACATTCAAGC 485
||||||||||||.|.||.||.||.||||||||.||.|||||.|||||.||
RBAM_025580__ 436 TCAACCGATCCGTTCATTTTGGCGACAATTCGTCCGAATAATATTCAGGC 485
BSNT_04162___ 486 TTCAGAAAAAGACATCAGCAGATCGGGAAG-----CATCGAA-AGCATAA 529
.|.|||||||||| || ||.|.|||.| .||.||| ||
RBAM_025580__ 486 ATTAGAAAAAGAC----GC-GAACCGGACGGGTGATATTGAAGAG----- 525
BSNT_04162___ 530 ATGTCTCTCTT------------ACTGACCTTCGCACCGTGATTCAAGAG 567
||| .|.||..|.||.||.||.|||.||||.
RBAM_025580__ 526 --------CTTGCGGCGCCGCCGGCAGATTTGCGGACGGTCATTGAAGAA 567
BSNT_04162___ 568 GTCGTCAAAAAAACAGCTGACGGTGTTGATCTCTCCGAAGCGAAAATTAT 617
||.|||||||||||.||.|||||.||.|||.|.||.||||||||||||||
RBAM_025580__ 568 GTAGTCAAAAAAACGGCAGACGGCGTGGATTTATCAGAAGCGAAAATTAT 617
BSNT_04162___ 618 CGTTGCGGGCGGCCGAGGAGTCAAAAGTAAGGAAGGATTTCAGCCGCTGC 667
|||.||.||||||||.||.||.|||||.||.||.||||||.|.|||.|..
RBAM_025580__ 618 CGTAGCAGGCGGCCGCGGTGTAAAAAGCAAAGATGGATTTGAACCGTTAA 667
BSNT_04162___ 668 AGGAGCTTGCAGAGGTGCTAGGGGCCGCAGTCGGGGCTTCTCGCGGGGCA 717
|.||.|||||.||||||||.||.||.||.||.||.|||||.|||||.||.
RBAM_025580__ 668 AAGAACTTGCCGAGGTGCTCGGAGCAGCGGTGGGCGCTTCACGCGGCGCG 717
BSNT_04162___ 718 TGTGACGCTGATTATTGCGATTATGCTCTCCAAATCGGGCAGACCGGGAA 767
||||||||.||.||||||||||||.||||.||||||||.|||||.||.||
RBAM_025580__ 718 TGTGACGCGGACTATTGCGATTATTCTCTTCAAATCGGCCAGACGGGAAA 767
BSNT_04162___ 768 AGTCGTTACTCCGGATTTGTACATTGCATGCGGCATTTCCGGCGCCATCC 817
||||||.||.|||||||||||.||.||.|||||.||||||||.||.||.|
RBAM_025580__ 768 AGTCGTCACGCCGGATTTGTATATCGCCTGCGGAATTTCCGGAGCGATTC 817
BSNT_04162___ 818 AGCATTTGGCCGGCATGTCAAACAGCAAGGTGATCGTCGCCATCAATAAA 867
||||.|||||.||||||||||||||.|||||.|||||.|||||.||.|||
RBAM_025580__ 818 AGCACTTGGCGGGCATGTCAAACAGTAAGGTCATCGTTGCCATTAACAAA 867
BSNT_04162___ 868 GACCCCGAAGCCGATATCTTTAAAATAGCGGATTACGGCATCGTCGGTGA 917
|||||.|||||.||.||.||||||||||||||.|||||.||.|||||.||
RBAM_025580__ 868 GACCCGGAAGCGGAAATATTTAAAATAGCGGACTACGGAATTGTCGGCGA 917
BSNT_04162___ 918 TTTATTTGAAGTTGTCCCGTTATTAACTGAGGAATTCAAACAATTG--AA 965
|||.||.|||||.||.|||.|..|.||..|||||||.|| ||.|| ||
RBAM_025580__ 918 TTTGTTCGAAGTGGTTCCGCTTCTGACGCAGGAATTTAA--AAATGCCAA 965
BSNT_04162___ 966 TATACACTCATAA 978
|||.||.||||||
RBAM_025580__ 966 TATTCATTCATAA 978
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