Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04160 and RBAM_025570
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_04160___xsa.1.9828.seq
# -bsequence dna-align/RBAM_025570___xsa.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04160___xsa-RBAM_025570___xsa.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04160___xsa-RBAM_025570___xsa.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04160___xsa
# 2: RBAM_025570___xsa
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1553
# Identity: 1148/1553 (73.9%)
# Similarity: 1148/1553 (73.9%)
# Gaps: 106/1553 ( 6.8%)
# Score: 4188.0
#
#
#=======================================
BSNT_04160___ 1 ATGAAAGGAATGATCAGAGGCATGTCTGAACATCAA----GCAGTGATTC 46
.|||||.| ||| |||||.||||
RBAM_025570__ 1 ---------------------TTGTCTCA----CAATACGGCAGTCATTC 25
BSNT_04160___ 47 AAACAGATATCGTAAAAGGAACCATTAACAAAAATATATACGGTCATTTT 96
||||.||||||..|...|||||||||||.|||||.||||||||.|||||.
RBAM_025570__ 26 AAACTGATATCACACGGGGAACCATTAATAAAAACATATACGGACATTTC 75
BSNT_04160___ 97 GCTGAGCATTTAGGAAGAGGGATTTATGAGGGGATCTGGGTCGGAACGGA 146
||.||.||..|.||||||||.||.||||||||.|||||||||||||..||
RBAM_025570__ 76 GCGGAACACCTGGGAAGAGGCATATATGAGGGCATCTGGGTCGGAAAAGA 125
BSNT_04160___ 147 CTCAGACATCCCCAATATCAACGGGATACGAAAGGACGTGCTG-----GA 191
.||.||.||.||.||||.|..|||| |..|||||| |.|| |.
RBAM_025570__ 126 TTCCGATATTCCGAATACCGGCGGG----GTCAGGACG-GATGTCGCCGC 170
BSNT_04160___ 192 GGCGCTCAAACAGCTGCACATCCCTGTCCTCAGGTGGCCGGGCGGGTGTT 241
.||.|||||||||||.||.||.||.||||||||.|||||||||||.||||
RBAM_025570__ 171 CGCCCTCAAACAGCTTCAGATTCCCGTCCTCAGATGGCCGGGCGGCTGTT 220
BSNT_04160___ 242 TTGCGGACGAATACCATTGGGCAAACGGTGTCGGTGACCGTAAGACAATG 291
||||.||.||||||||||||||||||||.||.||..|.||.||.||.|||
RBAM_025570__ 221 TTGCTGATGAATACCATTGGGCAAACGGCGTAGGGAAACGCAAAACCATG 270
BSNT_04160___ 292 CTGAACACTCACTGGGGCGGTACAATTGAATCAAATGAATTCGGAACGCA 341
|||||.||.||.||||||||.||.|||||.||.|||||||||||.|||||
RBAM_025570__ 271 CTGAATACCCATTGGGGCGGGACGATTGATTCCAATGAATTCGGCACGCA 320
BSNT_04160___ 342 TGAATTTATGATGCTTTGCGAGCTGCTTGAATGCGAGCCATATATTTGCG 391
.||.||||||||||||||.||.|||||||..|||||.|||||.||...||
RBAM_025570__ 321 CGAGTTTATGATGCTTTGTGAACTGCTTGGCTGCGAACCATACATCGCCG 370
BSNT_04160___ 392 GCAATGTCGGAAGCGGAACCGTTCAGGAAATGGCGGAGTGGATTGAATAT 441
|.||.|||||.||||||||.|||.|.||||||||.||||||||||||||.
RBAM_025570__ 371 GAAACGTCGGCAGCGGAACGGTTAAAGAAATGGCTGAGTGGATTGAATAC 420
BSNT_04160___ 442 ATGACATTTGAAGAAGGCACGCCGATGTCAGACTGGAGAAAGCAAAATGG 491
|||||.|||||||..||||||||||||||.|||||||||||..||||.||
RBAM_025570__ 421 ATGACGTTTGAAGCGGGCACGCCGATGTCCGACTGGAGAAAAGAAAACGG 470
BSNT_04160___ 492 AAGAGAAGAGCCTTGGAAGCTGAAATATTTCGGCGTGGGCAATGAAAACT 541
..|.|||.|.||.||||||||||.|||||||||..|.||.|||||.||||
RBAM_025570__ 471 GCGGGAAAAACCGTGGAAGCTGACATATTTCGGAATAGGAAATGAGAACT 520
BSNT_04160___ 542 GGGGCTGCGGCGGCAACATGCATCCCGAATACTACGCAGATCTGTACCGG 591
|||||||||||||.|||||||||||.||.||.||.||.||.||.|||.|.
RBAM_025570__ 521 GGGGCTGCGGCGGAAACATGCATCCTGAGTATTATGCCGACCTTTACAGA 570
BSNT_04160___ 592 CGTTTTCAGACTTATGTCCGCAATTACAGTGGGAATGACATTTATAAAAT 641
...|||||.||.|||||||||||||||||.||.|||||.||.||||||||
RBAM_025570__ 571 AACTTTCAAACCTATGTCCGCAATTACAGCGGTAATGAAATCTATAAAAT 620
BSNT_04160___ 642 TGCAGGCGGAGCAAATGTGGATGATTTTAATTGGAC----GGACGTG--- 684
|||.|||||.||.|||||.||||||| || |||| ||
RBAM_025570__ 621 TGCCGGCGGCGCGAATGTCGATGATT--------ACCGCTGGAC-TGAAA 661
BSNT_04160___ 685 CTT--ATGAAAAAAGCCGCTGGCCTGATGGACGGGTTGAGTCTTCATTAT 732
||| ||||||||||||||||..||.|||||||||.||||.|||||||||
RBAM_025570__ 662 CTTTAATGAAAAAAGCCGCTGATCTCATGGACGGGCTGAGCCTTCATTAT 711
BSNT_04160___ 733 TACACGATTCCGGGGGATTTCTGGAACGGCAAAGGATCAGCCACAGAATT 782
|||||.||.|||||.|||||||||||.||.|||||||||||.||.||.||
RBAM_025570__ 712 TACACAATACCGGGCGATTTCTGGAAGGGGAAAGGATCAGCGACGGAGTT 761
BSNT_04160___ 783 CACGGAAGATGAGTGGTTTATTACGATGAAAAAAGC--CAAATACATCGA 830
.|||||||||||.|||||.||.|||||||||||||| |..|| ||.||
RBAM_025570__ 762 TACGGAAGATGAATGGTTCATCACGATGAAAAAAGCGGCGCAT--ATGGA 809
BSNT_04160___ 831 TGAATTGATTCA-AAAACACGGCACGATTATGGACCGGTACGATCCGGAG 879
|||||||| ||| ||..|||.||.|.||.|||||.|.|||||||||.||.
RBAM_025570__ 810 TGAATTGA-TCACAAGGCACAGCGCCATCATGGATCAGTACGATCCCGAA 858
BSNT_04160___ 880 CAGCGGGTCGGGCTGATTATTGATGAATGGGGCACTTGGTTTGATCCCGA 929
.|..|.|||||||||||.|||||||||||||||||.|||.|||||||.||
RBAM_025570__ 859 AAAAGAGTCGGGCTGATCATTGATGAATGGGGCACGTGGCTTGATCCTGA 908
BSNT_04160___ 930 GCCAGGCACGAATCCCGG-TTTCTTATATCAGCAAAACACCATTCGTGAT 978
|||||||||||||||.|| |||| |.||||||||.||.||.||.||.||.
RBAM_025570__ 909 GCCAGGCACGAATCCGGGCTTTC-TGTATCAGCAGAATACGATCCGCGAC 957
BSNT_04160___ 979 GCACTGGTGGCGGCTTCTCATTTCCACATTTTCCATCAGCATTGCCG-CC 1027
||.||.||.||.||..|.|||||.||||||||.|||||||| |||.| ||
RBAM_025570__ 958 GCCCTTGTCGCAGCCACGCATTTTCACATTTTTCATCAGCA-TGCAGACC 1006
BSNT_04160___ 1028 GGGTGCAAATGGCCAACATCGCCCAAACAGTAAACGTTCTGCAAGCGATG 1077
|.||.||.||||||||.|||||.|||||.||.||.||.||.||.||.|||
RBAM_025570__ 1007 GCGTACAGATGGCCAATATCGCGCAAACCGTCAATGTGCTTCAGGCAATG 1056
BSNT_04160___ 1078 ATTTTGACTG-AGGGCGAG-CGGATGCTTTTGACACCGACGTACCATGTA 1125
||..||||.| ||||..|| | |||||..||||.|||||.||.|||||.
RBAM_025570__ 1057 ATCCTGACAGAAGGGAAAGAC--ATGCTGCTGACGCCGACATATCATGTG 1104
BSNT_04160___ 1126 TTCAATATGTTTAAGGTGCACCAGGACGCTTCTCTTTTAGCAACAGAGAC 1175
||..||||||||||||||||.|||||||||||||||||.||.|||||.||
RBAM_025570__ 1105 TTTGATATGTTTAAGGTGCATCAGGACGCTTCTCTTTTGGCGACAGAAAC 1154
BSNT_04160___ 1176 AATGTCTGCCGACTATGAATGGAAGGGTGAAAC-----GCTTCCGCAAAT 1220
||...|.|||...||.||||||||.| || |||.||||||.|
RBAM_025570__ 1155 AAAAGCAGCCAGGTACGAATGGAATG-----ACGGCCGGCTCCCGCAAGT 1199
BSNT_04160___ 1221 CAGCATTTCAGCGTCGAAACAAGCTGAA-GGTGATGTCAATATCACTATT 1269
|||||||||||||||.|||| |||..|| ||.||..|..||||||..|||
RBAM_025570__ 1200 CAGCATTTCAGCGTCCAAAC-AGCAAAACGGAGACATACATATCAGCATT 1248
BSNT_04160___ 1270 TGCAACATCGATCACCAAAACAAAGCGGAGGCGGAAATCGAGCTGAGAGG 1319
|||||.||||||||.|...|.|||||.||.|.|.|.||.||.|||.|.||
RBAM_025570__ 1249 TGCAATATCGATCATCTGCAAAAAGCTGATGTGAAGATTGAACTGCGGGG 1298
BSNT_04160___ 1320 CCTACACAAGGCAGCGGACCATCCCGGAGTCATTCTT-ACGGCAGAAAAA 1368
|.|..|.|||.|||.|.|.|.|.|.|||...|||||| || ||.||||||
RBAM_025570__ 1299 CATGAAAAAGACAGGGAAGCCTTCGGGAACGATTCTTCAC-GCGGAAAAA 1347
BSNT_04160___ 1369 ATGAATGCGCATAACACGTTTGACGATCCTCATCATGTCAAACCGGAATC 1418
||||||||.||.||.||.||...|..|||..|..|.|||||||| |||.|
RBAM_025570__ 1348 ATGAATGCCCACAATACATTCAGCAGTCCGGAAAACGTCAAACC-GAAGC 1396
BSNT_04160___ 1419 C---TTCAGACAATACACGCTCAGCAAAAA------CAAACTGAAAGTAA 1459
| |||.|....| |||| |||| .|||||..|.|...
RBAM_025570__ 1397 CGTTTTCCGGGTTT----GCTC----AAAAGGGCGGAAAACTTGAGGCGG 1438
BSNT_04160___ 1460 AACTCCCGCCAATGTCAGTCGTCTTACTTACGCTGCGTGCTTAT---TCT 1506
|.||.||.||.|||.|.||.||..||.|.|||||||.|||..|| |||
RBAM_025570__ 1439 AGCTTCCTCCGATGGCGGTTGTACTAATCACGCTGCCTGCGGATCCATCT 1488
BSNT_04160___ 1507 TAA 1509
|||
RBAM_025570__ 1489 TAA 1491
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