Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04153 and RBAM_025540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_04153___lysC.1.9828.seq
# -bsequence dna-align/RBAM_025540___lysC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04153___lysC-RBAM_025540___lysC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04153___lysC-RBAM_025540___lysC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04153___lysC
# 2: RBAM_025540___lysC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1253
# Identity: 970/1253 (77.4%)
# Similarity: 970/1253 (77.4%)
# Gaps: 49/1253 ( 3.9%)
# Score: 3709.0
#
#
#=======================================
BSNT_04153___ 1 ATGGGTCTTATTGTACAAAAATTCGGAGGCACTTCCGTCGGCTCAGTCGA 50
|||||||||||.||||||||||||||||||||||||||||||||.|.|||
RBAM_025540__ 1 ATGGGTCTTATCGTACAAAAATTCGGAGGCACTTCCGTCGGCTCTGCCGA 50
BSNT_04153___ 51 AAAAATTCAAAATGCGGCAAACCGCGCAATTGCAGAAAAACAGAAAGGCC 100
|||||||||||||||.|||||.|||||.|||||.|||||.||.|||||||
RBAM_025540__ 51 AAAAATTCAAAATGCCGCAAATCGCGCCATTGCTGAAAAGCAAAAAGGCC 100
BSNT_04153___ 101 ATCAAGTCGTTGTCGTCGTTTCAGCAATGGGAAAATCCACTGACGAATTG 150
||.|.|||||.|||||||||||.||||||||||||||.||.||||...|.
RBAM_025540__ 101 ATGATGTCGTAGTCGTCGTTTCGGCAATGGGAAAATCAACCGACGCGCTC 150
BSNT_04153___ 151 GTCAGCCTTGC----AAAAGCTATTTCTG-ACCAGCCGAGCAAACGCGAA 195
||.|.|||.|| .|||.| |..|||| |||| ||||.||||||.
RBAM_025540__ 151 GTTAACCTCGCGGCTGAAATC-ACATCTGAACCA----AGCAGACGCGAG 195
BSNT_04153___ 196 ATGGATATGCTGCTGGCGACAGGCGAGCAGGTCACGATTTCACTCCTTT- 244
|||||||||||..||.|.||.||.|||||||||||||||||.|| |||
RBAM_025540__ 196 ATGGATATGCTTTTGTCTACGGGAGAGCAGGTCACGATTTCGCT--TTTG 243
BSNT_04153___ 245 -CAATGGCATTGCAGGAAAAAGGCTATGATGCTGTGTCTTATACTGGCTG 293
|.|||||..|.|||||||||||.|||||.||.||.||||||||.|||||
RBAM_025540__ 244 GCCATGGCGCTTCAGGAAAAAGGATATGACGCCGTCTCTTATACGGGCTG 293
BSNT_04153___ 294 GCAGGCGGGAATCCGTACGGAGGCCATTCACGGAAACGCCAGAATTACAG 343
|||||||||..||||.|||||.||..|||||||.||.||.||||||||.|
RBAM_025540__ 294 GCAGGCGGGTGTCCGCACGGAAGCTGTTCACGGCAATGCGAGAATTACGG 343
BSNT_04153___ 344 ATATCGA---CACTTCGGTT--TTAGCAGACCAGCTTGAAAAAGGAAAAA 388
||||.|| |||..||.|| ||.| |||||||.|.||||.|..|
RBAM_025540__ 344 ATATTGATATCACGGCGATTCGTTCG-----CAGCTTGCAGAAGGCAGGA 388
BSNT_04153___ 389 TT---GTCATTGTTGCAGGATTCCAAGGCATGACAGAGGATTGTGAAATT 435
|| ||| |||||.||.||.||.|||.|.||.||.||..|.|..||.
RBAM_025540__ 389 TTACAGTC---GTTGCCGGTTTTCAGGGCGTAACGGAAGACGGAGGCATC 435
BSNT_04153___ 436 ACGACATTGGGCCGGGGCGGTTCAGATACAACAGCAGTTGCTTTGGCTGT 485
|||||..|.||.|||||||||||.|||||.||.||.||.|||.|.||.|.
RBAM_025540__ 436 ACGACGCTCGGACGGGGCGGTTCCGATACGACGGCTGTCGCTCTTGCCGC 485
BSNT_04153___ 486 CGCTTTAAAAGCTGATAAATGTGACATATACACAGACGTGCCAGGCGTGT 535
.||..|..||||.||||||||.|||||.||.|||||.||.||.|||||.|
RBAM_025540__ 486 AGCGCTGGAAGCGGATAAATGCGACATTTATACAGATGTTCCGGGCGTAT 535
BSNT_04153___ 536 TTACAACTGATCCGCGCTATGTGAAATCAGCGAGAAAACTTGCGGGCATC 585
||||.||.||||||||.|||||....||||||||||||||.|||||.||.
RBAM_025540__ 536 TTACGACAGATCCGCGGTATGTCCGGTCAGCGAGAAAACTGGCGGGAATT 585
BSNT_04153___ 586 TCATACGATGAAATGCTTGAGCTTGCCAATTTAGGCGCCGGTGTTCTTCA 635
||.||.|||||||||||.||||||||.|||.|.||.||.|||||||||||
RBAM_025540__ 586 TCTTATGATGAAATGCTGGAGCTTGCAAATCTGGGAGCGGGTGTTCTTCA 635
BSNT_04153___ 636 TCCGAGAGCAGTTGAGTTCGCGAAAAATTACCAAGTGCCGTTAGAAGTGC 685
.|||.|.||.|||||||||||||||||.|||||||||||.||.|||||||
RBAM_025540__ 636 CCCGCGGGCGGTTGAGTTCGCGAAAAACTACCAAGTGCCTTTGGAAGTGC 685
BSNT_04153___ 686 GTTCAAGTACAGAAACCGAAGCGGGAACATTAATTGAGGAGGAATCATCC 735
|.|||||.||.|||...||||||||||||||||||||||||||||||||.
RBAM_025540__ 686 GGTCAAGCACGGAACATGAAGCGGGAACATTAATTGAGGAGGAATCATCA 735
BSNT_04153___ 736 ATGGAACAGAATTTAATTGTCAGAGGCATTGCATTTGAAGATCAAATCAC 785
|||||.|||||||||||.||||||||.||.|||||||||||.||.|||||
RBAM_025540__ 736 ATGGAGCAGAATTTAATCGTCAGAGGAATCGCATTTGAAGACCAGATCAC 785
BSNT_04153___ 786 AAGAGTAACCATTTACGGGC--TGACTAGCGGTCTGACAACTTTGTCTAC 833
.||.||..|| .||||.||| || |.|||||..|||||||..|.||.||
RBAM_025540__ 786 GAGGGTGTCC-GTTACAGGCCTTG-CAAGCGGATTGACAACACTTTCAAC 833
BSNT_04153___ 834 TATTTTTACGACACTTGCCAAAAGAAACATAAACGTGGATATCATTATCC 883
.||.||.||..|.||.||.|||.|||||||.||.||.||.||.|||||.|
RBAM_025540__ 834 AATCTTCACCGCGCTGGCAAAACGAAACATCAATGTTGACATTATTATTC 883
BSNT_04153___ 884 AAACGCAGGCCGA----GGACAAGACTGGA-ATTTCCTTCTCTGTCAAAA 928
|.||.|||.|.|| ||..||| .||| |||||.|||||.||.||||
RBAM_025540__ 884 AGACACAGTCGGACGATGGGGAAG--CGGATATTTCTTTCTCAGTGAAAA 931
BSNT_04153___ 929 CAGAAGATGCAGATCAAACCGTTGCGGTGCTTGAAGAGTATAAAGACGCG 978
|.||||||||.|..|||||.||.||.|||||||||||.||||||.|||||
RBAM_025540__ 932 CGGAAGATGCCGCGCAAACGGTCGCCGTGCTTGAAGAATATAAAAACGCG 981
BSNT_04153___ 979 CTGGAATTTGAGAAAATCGAGACAGAAAGCAAATTGGCTAAAGTATCCAT 1028
||.||.|.|||.|||||.||.||.|||||.|||.||||.|||||.||.||
RBAM_025540__ 982 CTTGACTATGAAAAAATTGAAACCGAAAGAAAACTGGCGAAAGTCTCTAT 1031
BSNT_04153___ 1029 TGTTGGATCCGGCATGGTCTCAAATCCTGGTGTAGCGGCTGAAATGTTTG 1078
|||.||.||.||||||||.||||||||.||.||.||.||.||.|||||||
RBAM_025540__ 1032 TGTCGGGTCGGGCATGGTTTCAAATCCCGGCGTCGCCGCGGACATGTTTG 1081
BSNT_04153___ 1079 CTGTACTGGCGCAAAAAA----ACATTTTAATCAAAATGGTCAGCACTTC 1124
|.|||||||||.|||||| ||| |.||||||||||.|||||.||
RBAM_025540__ 1082 CCGTACTGGCGGAAAAAAATGTACA----AGTCAAAATGGTGAGCACATC 1127
BSNT_04153___ 1125 TGAAATCAAAGTGTCAACAGTCGTAAGCGAAAATGACATGGTGAAAGCAG 1174
||||||.|||||.|||.|.||.||.|||||||||||.|||||||||||.|
RBAM_025540__ 1128 TGAAATAAAAGTATCAGCGGTTGTCAGCGAAAATGATATGGTGAAAGCGG 1177
BSNT_04153___ 1175 TCGAGTCGCTTCACGATGCATTTGAGCTTTCAAAACACCCTTCAGCTGTG 1224
||||..|||||||..||||.|||||||||||.|||||.||.||.||.|||
RBAM_025540__ 1178 TCGAAGCGCTTCATAATGCGTTTGAGCTTTCTAAACAGCCGTCTGCCGTG 1227
BSNT_04153___ 1225 TAA 1227
|||
RBAM_025540__ 1228 TAA 1230
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