Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04149 and RBAM_025510
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:32
# Commandline: needle
# -asequence dna-align/BSNT_04149___sdhA.1.9828.seq
# -bsequence dna-align/RBAM_025510___sdhA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04149___sdhA-RBAM_025510___sdhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04149___sdhA-RBAM_025510___sdhA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04149___sdhA
# 2: RBAM_025510___sdhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1763
# Identity: 1499/1763 (85.0%)
# Similarity: 1499/1763 (85.0%)
# Gaps: 4/1763 ( 0.2%)
# Score: 6415.0
#
#
#=======================================
BSNT_04149___ 1 ATGAGTCAATCAAGCATTATCGTAGTCGGCGGGGGTCTTGCCGGCCTCAT 50
||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_025510__ 1 ATGAGTCAATCAAGCATTATCGTAGTCGGCGGGGGTCTTGCCGGCCTCAT 50
BSNT_04149___ 51 GGCGACAATTAAAGCAGCGGAATCAGGAATGGCGGTTAAGCTGTTTTCCA 100
|||||||||||||||||||||||||||.|.|||.|||||..|||||||||
RBAM_025510__ 51 GGCGACAATTAAAGCAGCGGAATCAGGCACGGCCGTTAAATTGTTTTCCA 100
BSNT_04149___ 101 TCGTTCCTGTCAAACGTTCTCATTCGGTTTGTGCGCAAGGCGGCATAAAC 150
|||||||.||||||||.|||||.|||||.||.|||||.|||||.||||||
RBAM_025510__ 101 TCGTTCCGGTCAAACGCTCTCACTCGGTCTGCGCGCAGGGCGGGATAAAC 150
BSNT_04149___ 151 GGAGCGGTCAATACAAAAGGGGAAGGTGACTCTCCGTGGGAACATTTTGA 200
|||||.|||||.||||||||||||||.||||||||||..||.||||||||
RBAM_025510__ 151 GGAGCTGTCAACACAAAAGGGGAAGGAGACTCTCCGTTTGAGCATTTTGA 200
BSNT_04149___ 201 TGACACGGTATACGGGGGAGACTTTCTTGCCAACCAGCCGCCGGTCAAGG 250
|||||||||||||||.||.||||||.|.||.||||||||.||.||.||.|
RBAM_025510__ 201 TGACACGGTATACGGAGGCGACTTTTTGGCAAACCAGCCTCCTGTAAAAG 250
BSNT_04149___ 251 CGATGTGTGAAGCGGCGCCTTCGATCATCCACTTATTAGACCGGATGGGC 300
|||||||||||||||||||.||.||.|||||||||||.|||||.|||||.
RBAM_025510__ 251 CGATGTGTGAAGCGGCGCCGTCCATTATCCACTTATTGGACCGCATGGGG 300
BSNT_04149___ 301 GTCATGTTTAACCGGACGCCTGAAGGCCTGCTT-GATTTCCGCCGATTCG 349
||.|||||||||.|.|||||.|||||.|| ||| ||.||||||||.||||
RBAM_025510__ 301 GTTATGTTTAACAGAACGCCGGAAGGGCT-CTTGGACTTCCGCCGTTTCG 349
BSNT_04149___ 350 GGGGTACACAGCACCACAGAACTGCTTATGCTGGTGCGACGACGGGACAG 399
|||||||||||||.||||||||.||.||.||.||.|||||||||||.|||
RBAM_025510__ 350 GGGGTACACAGCATCACAGAACCGCATACGCGGGAGCGACGACGGGTCAG 399
BSNT_04149___ 400 CAGCTGCTTTACGCACTGGACGAGCAAGTGCGCAGATACGAAGTTGCGGG 449
|||||.||||||||||||||||||||.|||||||||||.|||||.|||||
RBAM_025510__ 400 CAGCTTCTTTACGCACTGGACGAGCAGGTGCGCAGATATGAAGTGGCGGG 449
BSNT_04149___ 450 TCTGGTCACAAAATACGAAGGTTGGGAATTCCTTGGCGCTGTTTTAGATG 499
|||.|||||||||||||||||.|||||||||||.|||||.|||.|.||.|
RBAM_025510__ 450 TCTCGTCACAAAATACGAAGGCTGGGAATTCCTCGGCGCCGTTCTTGACG 499
BSNT_04149___ 500 ATGACAGAACCTGCCGCGGAATTGTTGCACAAAACCTGACAAACATGCAA 549
||||..|.||.||||||||.||.||.||.|||||.|||||.||.||||||
RBAM_025510__ 500 ATGAGCGCACGTGCCGCGGTATCGTAGCCCAAAATCTGACCAATATGCAA 549
BSNT_04149___ 550 ATTGAATCTTTCCGTTCAGACGCTGTCATTATGGCGACGGGCGGACCGGG 599
||.||.||.||||||||.|||||.||.||||||||||||||.|||||.||
RBAM_025510__ 550 ATCGAGTCATTCCGTTCTGACGCCGTTATTATGGCGACGGGAGGACCCGG 599
BSNT_04149___ 600 AATCATCTTTGGAAAATCAACGAACTCCATGATTAATACAGGATCTGCTG 649
||||.|.||.||.||||||||.|||..||||||.||.||.||||||||.|
RBAM_025510__ 600 AATCGTATTCGGCAAATCAACAAACAGCATGATCAACACGGGATCTGCCG 649
BSNT_04149___ 650 CATCAATCGTTTATCAGCAGGGAGCGTATTATGCAAACGGAGAATTCATT 699
||||||||||||||||||||||.||.||||||||||||||.|||||.||.
RBAM_025510__ 650 CATCAATCGTTTATCAGCAGGGCGCTTATTATGCAAACGGCGAATTTATC 699
BSNT_04149___ 700 CAAATCCACCCGACAGCCATACCGGGCGATGACAAATTAAGACTGATGAG 749
|||||.|||||||||||.||.|||||.||.||.|||.|..|..|||||||
RBAM_025510__ 700 CAAATTCACCCGACAGCAATCCCGGGGGACGATAAACTGCGTTTGATGAG 749
BSNT_04149___ 750 TGAATCAGCGCGTGGTGAAGGCGGTCGCGTGTGGACATATAAAGACGGCA 799
||||||.|||||.||.||.|||||..|.||.|||||.||.||||||||.|
RBAM_025510__ 750 TGAATCGGCGCGCGGCGAGGGCGGAAGAGTCTGGACGTACAAAGACGGAA 799
BSNT_04149___ 800 AACCTTGGTATTTCCTGGAGGAAAAATATCCGGCATACGGAAACCTGGTG 849
||||||||||.|||||.|||||||||||||||||.|||||||||||.|||
RBAM_025510__ 800 AACCTTGGTACTTCCTTGAGGAAAAATATCCGGCTTACGGAAACCTCGTG 849
BSNT_04149___ 850 CCGCGTGATATTGCGACACGCGAAATATTTGATGTGTGTGTGAACCAGAA 899
|||||.||||||||||||||.|||||.|||||.|||||.|||||.|||||
RBAM_025510__ 850 CCGCGGGATATTGCGACACGTGAAATCTTTGACGTGTGCGTGAATCAGAA 899
BSNT_04149___ 900 GCTCGGCATTAACGGTGAAAACATGGTATATCTCGATCTGTCTCATAAAG 949
.||||||||.|||||.|||||||||||.||||||||||||||.||.||||
RBAM_025510__ 900 ACTCGGCATCAACGGAGAAAACATGGTGTATCTCGATCTGTCGCACAAAG 949
BSNT_04149___ 950 ATCCGAAAGAGCTTGATATTAAGCTTGGCGGCATCATTGAGATTTACGAG 999
|||||||||||||.||..||||||||||||||||.||.||.||.||.||.
RBAM_025510__ 950 ATCCGAAAGAGCTCGACGTTAAGCTTGGCGGCATTATCGAAATCTATGAA 999
BSNT_04149___ 1000 AAATTCATGGGAGACGACCCGCGTAAGCTTCCAATGAAAATCTTCCCGGC 1049
|||||||||||.||.||||||||.||||||||.||||||||.|||||.||
RBAM_025510__ 1000 AAATTCATGGGCGATGACCCGCGCAAGCTTCCGATGAAAATTTTCCCTGC 1049
BSNT_04149___ 1050 GGTCCATTATTCTATGGGCGGTTTATGGGTGGATTACGATCAAATGACAA 1099
.||.||.|||||.||||||||..|.|||||.|||||.|||||.|||||||
RBAM_025510__ 1050 CGTTCACTATTCAATGGGCGGACTGTGGGTTGATTATGATCAGATGACAA 1099
BSNT_04149___ 1100 ACATCCCTGGACTGTTTGCGGCTGGGGAATGTGATTATTCTATGCACGGC 1149
.|||||..||||||||.||.||.||.||||||||||||||.||||||||.
RBAM_025510__ 1100 GCATCCGCGGACTGTTCGCAGCGGGTGAATGTGATTATTCAATGCACGGA 1149
BSNT_04149___ 1150 GGCAACCGCTTGGGAGCGAACTCCTTGCTGTCTGCGATTTACGGAGGCAT 1199
||.|||||.||.||.||||||||..||||.||.||.||.||||||||.||
RBAM_025510__ 1150 GGAAACCGTTTAGGGGCGAACTCTCTGCTTTCCGCCATCTACGGAGGAAT 1199
BSNT_04149___ 1200 GGTGGCCGGACCGAATGCGGTGAAATATGTAAACGG-CTTAGAATCTTCA 1248
||||||||||||||||||||||||||||||...||| ||| |||.|.|||
RBAM_025510__ 1200 GGTGGCCGGACCGAATGCGGTGAAATATGTTTCCGGACTT-GAAACATCA 1248
BSNT_04149___ 1249 GCGGAAGACATGTCTTCATCTTTATTCGACGCTCACGTTAAGAAAGAAGA 1298
|||||||||.|||||||.||.|||||.||..|..|.||.||.||||||||
RBAM_025510__ 1249 GCGGAAGACCTGTCTTCTTCATTATTTGATTCCTATGTGAAAAAAGAAGA 1298
BSNT_04149___ 1299 AGAAAAATGGGCTGACATTATGAGTATGGACGGAACCGAAAATGCCTATG 1348
||||||||||||.||.|||||||..||||||||...||||||||||||.|
RBAM_025510__ 1299 AGAAAAATGGGCCGATATTATGAAGATGGACGGCGACGAAAATGCCTACG 1348
BSNT_04149___ 1349 TTCTTCACAAAGAGCTCGGTGAGTGGATGACGGCGAACGTAACGGTTGTC 1398
|.||||||...||||||||.||.|||||||||||.|||||.|||||.|||
RBAM_025510__ 1349 TGCTTCACCGTGAGCTCGGAGAATGGATGACGGCCAACGTCACGGTGGTC 1398
BSNT_04149___ 1399 CGCCATAATGACAAGCTTTTGAAAACGGATGACAAAATTCAGGAGTTAAT 1448
|||||.||.|||||||||||||||||||||||||||||.||.|||.|.||
RBAM_025510__ 1399 CGCCACAACGACAAGCTTTTGAAAACGGATGACAAAATCCAAGAGCTGAT 1448
BSNT_04149___ 1449 GGAGCGCTTCAAAAAGATCAACATCAATGACACGACAAAATGGAGCAACC 1498
|||.|||||.||.||.|||||.|||||.||.|||||||||||||||||||
RBAM_025510__ 1449 GGAACGCTTTAAGAAAATCAATATCAACGATACGACAAAATGGAGCAACC 1498
BSNT_04149___ 1499 AGGGAGCGATGTTCACACGCCAGTTCTCAAACATGCTTCAGCTTGCTAGG 1548
|.||.|||||||||||.|||||||||||.||.||||||||||||||.||.
RBAM_025510__ 1499 AAGGGGCGATGTTCACCCGCCAGTTCTCCAATATGCTTCAGCTTGCCAGA 1548
BSNT_04149___ 1549 GTGATTACCCTTGGCGCATACAACCGTAATGAAAGCCGGGGCGCCCATTA 1598
||.||.||.||.||||||||.|||||.||||||||||||||.||.||.||
RBAM_025510__ 1549 GTTATCACGCTCGGCGCATATAACCGAAATGAAAGCCGGGGAGCGCACTA 1598
BSNT_04149___ 1599 TAAACCGGATTATCCTGAACGTAATGATGATGAATGGCTCAAAACAACAA 1648
|||||||||||..||||||.|.|||||.|||||.|||||||||||.||.|
RBAM_025510__ 1599 TAAACCGGATTTCCCTGAAAGAAATGACGATGAGTGGCTCAAAACGACGA 1648
BSNT_04149___ 1649 TGGCTAAACATGTAAGCCCGTATGAAGCGCCGGAATTTGAGTATCAGGAT 1698
||||.|||||||...|.||||.||||||.|||||||||||.|||||||||
RBAM_025510__ 1649 TGGCGAAACATGCCGGTCCGTTTGAAGCTCCGGAATTTGAATATCAGGAT 1698
BSNT_04149___ 1699 GTCGATGTATCACTGATAACGCCTCGGAAACGGGATTACTCGAAGAAGAA 1748
|||||||||||||||||..||||.||.|||||.||.||||||||||||||
RBAM_025510__ 1699 GTCGATGTATCACTGATTGCGCCCCGTAAACGCGACTACTCGAAGAAGAA 1748
BSNT_04149___ 1749 GGTGGCGAAATAA 1761
|||||||||||||
RBAM_025510__ 1749 GGTGGCGAAATAA 1761
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