Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04141 and RBAM_025450
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:31
# Commandline: needle
# -asequence dna-align/BSNT_04141___gerM.1.9828.seq
# -bsequence dna-align/RBAM_025450___gerM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04141___gerM-RBAM_025450___gerM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04141___gerM-RBAM_025450___gerM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04141___gerM
# 2: RBAM_025450___gerM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1110
# Identity: 841/1110 (75.8%)
# Similarity: 841/1110 (75.8%)
# Gaps: 33/1110 ( 3.0%)
# Score: 3130.5
#
#
#=======================================
BSNT_04141___ 1 ATGCTGAAAAAAGGACCTGCAGTCATTGGTGCCACTTGTCTCACCTCTGC 50
||||||||||||||||||||||||||||.|||.||.|||||.||.||.||
RBAM_025450__ 1 ATGCTGAAAAAAGGACCTGCAGTCATTGCTGCAACATGTCTTACTTCGGC 50
BSNT_04141___ 51 CTTGCTTTTATCCGGATGCGGTTTGTTTCAATCTGATAAGGCAGCCGAGG 100
.||..|.|||||.||||||||||||||||||||.|||||..||||||.||
RBAM_025450__ 51 TTTTGTGTTATCTGGATGCGGTTTGTTTCAATCCGATAAAACAGCCGGGG 100
BSNT_04141___ 101 AAATTGATCCGCCTCAAGACGTTACATTCGTGAACGATGAAGCGGGTGCC 150
|||||||.||||||||||||.||.|||..||.||.|||||||||||
RBAM_025450__ 101 AAATTGACCCGCCTCAAGACATTTCATATGTAAAGGATGAAGCGGG---- 146
BSNT_04141___ 151 AATTCA---AATACAACAGCAGCCAAAAAAACAGAAAGTGAAAAAAGCGA 197
|||||| ||.||.|.|||||.|| ||.||||.||.
RBAM_025450__ 147 AATTCAGGCAAAACCAAAGCAGTCA--------------GAGAAAAACGG 182
BSNT_04141___ 198 TACCGCAAAAGCGGATCAAGCC--TCATCTACTGTTATGAGGGAGCTTTA 245
.||..|.|||||.|| |.|||| .|| .|||.||.|||.|.|||||.||
RBAM_025450__ 183 CACTTCTAAAGCCGA-CCAGCCGGCCA-ATACAGTCATGCGAGAGCTGTA 230
BSNT_04141___ 246 TCTCATTGATAAAAACGGATATGTTGTTGCGCAAACGCTGCCTCTCCCTA 295
|||.||||||||||||||.|||||.|..||.||.||.||||||||.||.|
RBAM_025450__ 231 TCTGATTGATAAAAACGGCTATGTCGCAGCACAGACACTGCCTCTTCCGA 280
BSNT_04141___ 296 AAAGTGAGAGCACGGCTAAGCAGGCGCTTGAATACCTCGTACAGGGCGGG 345
|.||||||.|.||.||.||||||||.|||||.||..|.||.|||||.|||
RBAM_025450__ 281 ACAGTGAGGGAACCGCAAAGCAGGCCCTTGAGTATTTGGTTCAGGGAGGG 330
BSNT_04141___ 346 CCTGTGTCTGAAATTCTTCCGAATGGCTTCAGAGCTGTATTGCCGGCTGA 395
||||||||.|||||.||.|||||.|||||||||||.||..|.||.||.||
RBAM_025450__ 331 CCTGTGTCAGAAATCCTGCCGAACGGCTTCAGAGCGGTGCTCCCTGCGGA 380
BSNT_04141___ 396 CACCACCGTTAACGTTGACATCAAAAAAGATGGAACCGCGATAGCTGATT 445
.||.||.||.||.||.||.||.||||||||.||.||.||..|.|||||||
RBAM_025450__ 381 TACGACGGTAAATGTCGATATTAAAAAAGACGGCACTGCCGTCGCTGATT 430
BSNT_04141___ 446 TCTCTAATGAGTTCAAAAATTATAAGAAAGAGGACGAACAGAAAATCGTT 495
|.||.||.||.||.|||||.|||||.|||||.||||||||.||||||.|.
RBAM_025450__ 431 TTTCGAAGGAATTTAAAAACTATAAAAAAGAAGACGAACAAAAAATCCTG 480
BSNT_04141___ 496 CAATCTGTGACGTGGACGCTGACGCAATTTAGTTCGATAGATAAAGTGAA 545
|||||..|.||.||||||||.||.|||||.||.||.|||||||||||.||
RBAM_025450__ 481 CAATCGATTACATGGACGCTTACCCAATTCAGCTCAATAGATAAAGTCAA 530
BSNT_04141___ 546 GCTGAGAATAAACGGGCATGAACTGAAGGAGATGCCTGTAGGAGGGACGC 595
..|.|||||.||||||||.||||||||.||.||||||||.||.||.||.|
RBAM_025450__ 531 AATCAGAATCAACGGGCACGAACTGAAAGAAATGCCTGTGGGCGGCACTC 580
BSNT_04141___ 596 CGATCTCAGATGATTTAAGCCGCAAAGACGGCATTAATTTGGAAACAGCC 645
||||..|.|..||.||||||.|.||||||||.||||||.|.|||||.|||
RBAM_025450__ 581 CGATTACGGGCGACTTAAGCAGAAAAGACGGGATTAATATTGAAACGGCC 630
BSNT_04141___ 646 GGTGTAAATGATCTCACTGCTACCCATCCGCTGACAGTCTACTACTTGGC 695
||.||.||||||||.||.|..||||||||||||||.|||||.||..||||
RBAM_025450__ 631 GGAGTGAATGATCTGACAGACACCCATCCGCTGACTGTCTATTATCTGGC 680
BSNT_04141___ 696 GGAAAACGAAGAC-AGTGAATACTACGTGCCGGTGACGAAACGAATCGAC 744
|| ||||..|||| ||.||||||||||||||.||.||.||.||.||.|||
RBAM_025450__ 681 GG-AAACAGAGACGAGCGAATACTACGTGCCTGTCACAAAGCGGATTGAC 729
BSNT_04141___ 745 AATTCGGAAAAAGACGACATCACAGCAGCCATTAATGAATTGGCTAAAGG 794
||||||||||.|||.||||||||.||.|||.||.|..|..|.||..|.||
RBAM_025450__ 730 AATTCGGAAACAGATGACATCACCGCTGCCGTTGAACAGCTCGCCGACGG 779
BSNT_04141___ 795 CCCAAGCAAGGTGAGCGGGCTGTTAACAGACTTCAGTGAAGATGTAAAGC 844
.||..||||.|..||||||||.||.||.|||||.|.|.|.|||||.||||
RBAM_025450__ 780 ACCGGGCAAAGCAAGCGGGCTTTTGACGGACTTTAATAACGATGTTAAGC 829
BSNT_04141___ 845 TGGTCAGCAAACCGAAAATCAAAGACGGGCGCGTGACGTTGGATTTCAAT 894
|..|||||||.||||||.|.||||||||.|..||.||..||||.||.||
RBAM_025450__ 830 TTCTCAGCAAGCCGAAAGTAAAAGACGGCCAGGTTACACTGGACTTTAA- 878
BSNT_04141___ 895 CA-ATCTATATTCGGCAGCGCCGATGAGAAGACGAAAATGATTTCTTCAG 943
|| .||.||.|.|||.||||||||.||.||.||.||||||.|.||.||.|
RBAM_025450__ 879 CAGCTCCATTTACGGAAGCGCCGACGAAAAAACAAAAATGGTATCATCGG 928
BSNT_04141___ 944 AAGTGCTGAACAGCATTGTGCTGACGTTAACGGAGCAGCCG--GATGTAA 991
..||.|||.|||||||.||.||.||||||||.||.|||||| || |.|
RBAM_025450__ 929 GCGTACTGGACAGCATCGTTCTCACGTTAACCGAACAGCCGTCGA--TTA 976
BSNT_04141___ 992 AAAGCGTCTCTGTTAAAGTGAACGGAAAATCAGAGCTTGTAAATGAAAAA 1041
||||.||.|||.|.|||||.||||||||||||||.||.||.|||||||||
RBAM_025450__ 977 AAAGTGTTTCTATAAAAGTAAACGGAAAATCAGAACTGGTGAATGAAAAA 1026
BSNT_04141___ 1042 GGCGAAAAGCTCACAGAACCGGTCTCCAGACCTTCTCAAGTGAATACGGG 1091
||.|||...||..||.||||.||.||.||.||.||.||||||||||||||
RBAM_025450__ 1027 GGAGAATCCCTTTCAAAACCTGTTTCGAGGCCGTCACAAGTGAATACGGG 1076
BSNT_04141___ 1092 TAGTTTTTAA 1101
||||||||||
RBAM_025450__ 1077 TAGTTTTTAA 1086
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