Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04136 and RBAM_025420
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_04136___ysnB.1.9828.seq
# -bsequence dna-align/RBAM_025420___ysnB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04136___ysnB-RBAM_025420___ysnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04136___ysnB-RBAM_025420___ysnB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04136___ysnB
# 2: RBAM_025420___ysnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 537
# Identity: 381/537 (70.9%)
# Similarity: 381/537 (70.9%)
# Gaps: 54/537 (10.1%)
# Score: 1280.0
#
#
#=======================================
BSNT_04136___ 1 ATGAACGTGCTGATTATCAGTGACAGCCATGGGCTTGAAGAAGAACTCCA 50
|||||.||||||||.||.||||||||.||.||.||||||||.||.||..|
RBAM_025420__ 1 ATGAAAGTGCTGATAATAAGTGACAGTCACGGCCTTGAAGACGAGCTGGA 50
BSNT_04136___ 51 AACCATTGCGAAACGGCATGAGGCAGAAGTTGATCTCATGATTCATTGCG 100
.||.|||||.||.|||||.||.|..||||..|||||.|||||||||||||
RBAM_025420__ 51 GACGATTGCAAAGCGGCACGAAGAGGAAGCGGATCTGATGATTCATTGCG 100
BSNT_04136___ 101 GGGACTCTGAGCTTGAAACGAGG--CATCCTGCATTGGAGCCTTATGCGG 148
|.||.||.||||||| |||..| |||||.|| .||||.||.|
RBAM_025420__ 101 GTGATTCAGAGCTTG--ACGCTGCACATCCGGC-------GCTTACGCCG 141
BSNT_04136___ 149 TT-------GTAAAAGGCAATTGCGATTTTGCCGGCGATTTTAAGGACGA 191
|| |||||||||||||||||.||||.|||||..|||.||||.||
RBAM_025420__ 142 TTTCACACGGTAAAAGGCAATTGCGACTTTGGCGGCGGGTTTCAGGATGA 191
BSNT_04136___ 192 GCTTCTTCT-GACTGCCGGCTCAAGAAAAATACTGGTCACACACGGCCAC 240
.|||||||| ||| ||.||.||||..|||||.||||.|...|||||.||.
RBAM_025420__ 192 ACTTCTTCTGGAC-GCAGGTTCAAAGAAAATTCTGGCCGTTCACGGGCAT 240
BSNT_04136___ 241 CTTCACGGTATAAAACAGAC-CTTGTTAAACGTATACTATCGTGCAGAGG 289
||||||||.||.||||||.| ||| ||||..||.|..||.||.||.||.|
RBAM_025420__ 241 CTTCACGGCATTAAACAGTCACTT-TTAACTGTTTTTTACCGGGCGGAAG 289
BSNT_04136___ 290 AGCTCGGAGCGGATGTTATCTGCTTCGGGCATTCGCACATCGCGGGCAGC 339
||||.||.||||||||..||||||||||.|||||.||.||.||.||.||.
RBAM_025420__ 290 AGCTTGGGGCGGATGTCGTCTGCTTCGGCCATTCACATATTGCCGGGAGT 339
BSNT_04136___ 340 GAAGTGCTGCGCGGAAAACTGATGATTAACCCAGGCAGCATCCGGCTTCC 389
||||||||.||.||.||.||..||||||||||.|||||||||||.|||||
RBAM_025420__ 340 GAAGTGCTTCGGGGCAAGCTTTTGATTAACCCGGGCAGCATCCGCCTTCC 389
BSNT_04136___ 390 GAGGGTGCGCA---GGACAGAAAGCTATGCTATACTGACATT---AGAAA 433
|||.||.|||| .|| ||||||||||.||.||.||..| |||||
RBAM_025420__ 390 GAGAGTCCGCAATGTGA---AAAGCTATGCCATTCTTACTCTTACAGAAA 436
BSNT_04136___ 434 ATGATGCTGCGACAGTCCGT----TTTTACGACCAAGCAGGCAAT--GAA 477
..||.| ||| |||| |||||||||.||.|.|| | |.|
RBAM_025420__ 437 GAGAAG--GCG-----CCGTGACATTTTACGACGAAACGGG---TCGGGA 476
BSNT_04136___ 478 ATTG-AGGATCT---GCAAAACCGAGTCACACTATGA 510
|||| |||| || |.||.|| |.|||...|.|.|
RBAM_025420__ 477 ATTGAAGGA-CTTTGGGAATAC--AATCAGTTTTTAA 510
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