Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04136 and RBAM_025420

See Amino acid alignment / Visit BSNT_04136 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:30
# Commandline: needle
#    -asequence dna-align/BSNT_04136___ysnB.1.9828.seq
#    -bsequence dna-align/RBAM_025420___ysnB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04136___ysnB-RBAM_025420___ysnB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04136___ysnB-RBAM_025420___ysnB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04136___ysnB
# 2: RBAM_025420___ysnB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 537
# Identity:     381/537 (70.9%)
# Similarity:   381/537 (70.9%)
# Gaps:          54/537 (10.1%)
# Score: 1280.0
# 
#
#=======================================

BSNT_04136___      1 ATGAACGTGCTGATTATCAGTGACAGCCATGGGCTTGAAGAAGAACTCCA     50
                     |||||.||||||||.||.||||||||.||.||.||||||||.||.||..|
RBAM_025420__      1 ATGAAAGTGCTGATAATAAGTGACAGTCACGGCCTTGAAGACGAGCTGGA     50

BSNT_04136___     51 AACCATTGCGAAACGGCATGAGGCAGAAGTTGATCTCATGATTCATTGCG    100
                     .||.|||||.||.|||||.||.|..||||..|||||.|||||||||||||
RBAM_025420__     51 GACGATTGCAAAGCGGCACGAAGAGGAAGCGGATCTGATGATTCATTGCG    100

BSNT_04136___    101 GGGACTCTGAGCTTGAAACGAGG--CATCCTGCATTGGAGCCTTATGCGG    148
                     |.||.||.|||||||  |||..|  |||||.||       .||||.||.|
RBAM_025420__    101 GTGATTCAGAGCTTG--ACGCTGCACATCCGGC-------GCTTACGCCG    141

BSNT_04136___    149 TT-------GTAAAAGGCAATTGCGATTTTGCCGGCGATTTTAAGGACGA    191
                     ||       |||||||||||||||||.||||.|||||..|||.||||.||
RBAM_025420__    142 TTTCACACGGTAAAAGGCAATTGCGACTTTGGCGGCGGGTTTCAGGATGA    191

BSNT_04136___    192 GCTTCTTCT-GACTGCCGGCTCAAGAAAAATACTGGTCACACACGGCCAC    240
                     .|||||||| ||| ||.||.||||..|||||.||||.|...|||||.||.
RBAM_025420__    192 ACTTCTTCTGGAC-GCAGGTTCAAAGAAAATTCTGGCCGTTCACGGGCAT    240

BSNT_04136___    241 CTTCACGGTATAAAACAGAC-CTTGTTAAACGTATACTATCGTGCAGAGG    289
                     ||||||||.||.||||||.| ||| ||||..||.|..||.||.||.||.|
RBAM_025420__    241 CTTCACGGCATTAAACAGTCACTT-TTAACTGTTTTTTACCGGGCGGAAG    289

BSNT_04136___    290 AGCTCGGAGCGGATGTTATCTGCTTCGGGCATTCGCACATCGCGGGCAGC    339
                     ||||.||.||||||||..||||||||||.|||||.||.||.||.||.||.
RBAM_025420__    290 AGCTTGGGGCGGATGTCGTCTGCTTCGGCCATTCACATATTGCCGGGAGT    339

BSNT_04136___    340 GAAGTGCTGCGCGGAAAACTGATGATTAACCCAGGCAGCATCCGGCTTCC    389
                     ||||||||.||.||.||.||..||||||||||.|||||||||||.|||||
RBAM_025420__    340 GAAGTGCTTCGGGGCAAGCTTTTGATTAACCCGGGCAGCATCCGCCTTCC    389

BSNT_04136___    390 GAGGGTGCGCA---GGACAGAAAGCTATGCTATACTGACATT---AGAAA    433
                     |||.||.||||   .||   ||||||||||.||.||.||..|   |||||
RBAM_025420__    390 GAGAGTCCGCAATGTGA---AAAGCTATGCCATTCTTACTCTTACAGAAA    436

BSNT_04136___    434 ATGATGCTGCGACAGTCCGT----TTTTACGACCAAGCAGGCAAT--GAA    477
                     ..||.|  |||     ||||    |||||||||.||.|.||   |  |.|
RBAM_025420__    437 GAGAAG--GCG-----CCGTGACATTTTACGACGAAACGGG---TCGGGA    476

BSNT_04136___    478 ATTG-AGGATCT---GCAAAACCGAGTCACACTATGA    510
                     |||| |||| ||   |.||.||  |.|||...|.|.|
RBAM_025420__    477 ATTGAAGGA-CTTTGGGAATAC--AATCAGTTTTTAA    510


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