Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04110 and RBAM_025350

See Amino acid alignment / Visit BSNT_04110 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:29
# Commandline: needle
#    -asequence dna-align/BSNT_04110___ilvC.1.9828.seq
#    -bsequence dna-align/RBAM_025350___ilvC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04110___ilvC-RBAM_025350___ilvC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04110___ilvC-RBAM_025350___ilvC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04110___ilvC
# 2: RBAM_025350___ilvC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1029
# Identity:     877/1029 (85.2%)
# Similarity:   877/1029 (85.2%)
# Gaps:           0/1029 ( 0.0%)
# Score: 3777.0
# 
#
#=======================================

BSNT_04110___      1 ATGGTAAAAGTATATTATAACGGTGATATCAAAGAGAACGTATTGGCAGG     50
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
RBAM_025350__      1 ATGGTAAAAGTATATTATAACGGTGATATCAAAGAGAACGTATTGGCAGG     50

BSNT_04110___     51 CAAAACAGTAGCGGTTATCGGATACGGTTCGCAAGGCCACGCACATGCCC    100
                     .||||.|||||||.|||||||.||||||||.|||||.|||||||||||.|
RBAM_025350__     51 TAAAAAAGTAGCGATTATCGGTTACGGTTCACAAGGTCACGCACATGCGC    100

BSNT_04110___    101 TGAACCTTAAAGAAAGCGGAGTAGACGTGATCGTCGGTGTTAGACAAGGA    150
                     |||||.|.||||||||||||.|.||.||.||.|||||.||.|||||||||
RBAM_025350__    101 TGAACTTAAAAGAAAGCGGAATTGATGTCATTGTCGGCGTCAGACAAGGA    150

BSNT_04110___    151 AAATCTTTCACGCAAGCCCAAGAAGACGGACATAAAGTTTTTTCAGTAAA    200
                     |||||.||.||.||.||||||||||||||.|||.||||.|||||.||||.
RBAM_025350__    151 AAATCATTTACACAGGCCCAAGAAGACGGTCATCAAGTCTTTTCGGTAAG    200

BSNT_04110___    201 AGAAGCGGCAGCCCAAGCTGAAATCATCATGGTTCTGCTTCCTGATGAAC    250
                     |||||||||.|||||.|||||.|||||.||||||||.|||||.|||||||
RBAM_025350__    201 AGAAGCGGCTGCCCAGGCTGATATCATTATGGTTCTTCTTCCGGATGAAC    250

BSNT_04110___    251 AGCAGCAAAAAGTATACGAAGCTGAAATCAAAGATGAATTGACAGCAGGA    300
                     ||||||||||||||||.||||||||||||||||||||||||||.||.||.
RBAM_025350__    251 AGCAGCAAAAAGTATATGAAGCTGAAATCAAAGATGAATTGACGGCGGGC    300

BSNT_04110___    301 AAATCATTAGTATTTGCTCACGGATTTAACGTGCATTTCCATCAAATTGT    350
                     ||.|||||||||||.||.||||||||||||||.|||||||||||.||.||
RBAM_025350__    301 AAGTCATTAGTATTCGCACACGGATTTAACGTCCATTTCCATCAGATCGT    350

BSNT_04110___    351 TCCTCCGGCGGATGTTGATGTATTCTTGGTAGCGCCTAAAGGTCCGGGAC    400
                     .|||||.||.|||||.|||||||||.|.||.||.||||||||.|||||||
RBAM_025350__    351 GCCTCCTGCCGATGTGGATGTATTCCTTGTCGCCCCTAAAGGACCGGGAC    400

BSNT_04110___    401 ACTTGGTCAGAAGAACATATGAGCAAGGAGCCGGCGTACCTGCATTGTTC    450
                     ||.|.|||||||||||||||||.|||||.||.||||||||.||||||||.
RBAM_025350__    401 ACCTTGTCAGAAGAACATATGAACAAGGCGCGGGCGTACCGGCATTGTTT    450

BSNT_04110___    451 GCAATCTATCAAGATGTGACTGGAGAAGCAAGAGACAAAGCTCTCGCATA    500
                     ||.|||||.||.|||||..|.||.|||||.|.|||.|..|||||.||.||
RBAM_025350__    451 GCCATCTACCAGGATGTATCAGGCGAAGCGAAAGATACGGCTCTTGCTTA    500

BSNT_04110___    501 TGCAAAAGGAATCGGTGGCGCAAGAGCGGGAGTATTAGAAACGACATTTA    550
                     |||||||||||||||.||.||..|.|||||.||..|.|||||.|||||||
RBAM_025350__    501 TGCAAAAGGAATCGGCGGAGCGCGTGCGGGCGTTCTTGAAACAACATTTA    550

BSNT_04110___    551 AAGAAGAAACAGAAACAGATTTGTTCGGTGAGCAAGCGGTTCTTTGCGGC    600
                     |.||||||||.|||||.|||||||||||||||||.||.|||||.|||||.
RBAM_025350__    551 AGGAAGAAACGGAAACGGATTTGTTCGGTGAGCAGGCTGTTCTGTGCGGA    600

BSNT_04110___    601 GGATTAAGCGCGCTTGTCAAAGCAGGATTTGAAACATTAACTGAAGCAGG    650
                     ||.||||..||||||||||||||.||.||||||||..|.||.|||||.||
RBAM_025350__    601 GGTTTAACGGCGCTTGTCAAAGCGGGTTTTGAAACGCTGACAGAAGCCGG    650

BSNT_04110___    651 TTATCAGCCTGAACTTGCATACTTCGAGTGTCTGCATGAGCTGAAATTAA    700
                     .||.|||||||||||.||||||||||||||||||||.||.|||||..|.|
RBAM_025350__    651 CTACCAGCCTGAACTCGCATACTTCGAGTGTCTGCACGAACTGAAGCTGA    700

BSNT_04110___    701 TCGTAGACCTTATGTACGAAGAAGGACTTGCAGGAATGAGATATTCAATT    750
                     ||||||||.|.|||||.|||||||||.|.||.||.||||||||.||.||.
RBAM_025350__    701 TCGTAGACTTGATGTATGAAGAAGGATTGGCGGGCATGAGATACTCTATC    750

BSNT_04110___    751 TCTGACACAGCACAGTGGGGAGATTTCGTATCAGGCCCTCGCGTTGTGGA    800
                     |||||.||.||.||.|||||||||||.||.|||||.||.|||||.||.||
RBAM_025350__    751 TCTGATACGGCTCAATGGGGAGATTTTGTCTCAGGGCCGCGCGTAGTCGA    800

BSNT_04110___    801 TGCTAAAGTAAAAGAATCGATGAAAGAAGTATTAAAAGATATCCAAAACG    850
                     |||.||.||||||||||||||||||.|||||||||..|||||.|||||||
RBAM_025350__    801 TGCGAAGGTAAAAGAATCGATGAAACAAGTATTAACGGATATTCAAAACG    850

BSNT_04110___    851 GTACATTCGCAAAAGAATGGATCGTCGAAAACCAAGTAAACCGTCCTCGT    900
                     ||||||||||.||||||||||||||.|||||||||||.||||||||||||
RBAM_025350__    851 GTACATTCGCGAAAGAATGGATCGTGGAAAACCAAGTGAACCGTCCTCGT    900

BSNT_04110___    901 TTCAACGCTATCAATGCGAGCGAGAACGAACATCAAATCGAAGTAGTGGG    950
                     |||||.||.||||||||.||.||.|||||.|||||.||.|||...||.||
RBAM_025350__    901 TTCAATGCGATCAATGCAAGTGAAAACGAGCATCAGATTGAAAAGGTCGG    950

BSNT_04110___    951 AAGAAAGCTTCGTGAAATGATGCCGTTTGTGAAACAAGGCAAGAAGAAGG   1000
                     .|||.|||||||||||||||||||||||||.|||||||||||.|||||||
RBAM_025350__    951 CAGACAGCTTCGTGAAATGATGCCGTTTGTCAAACAAGGCAAAAAGAAGG   1000

BSNT_04110___   1001 AAGCGGTGGTCTCCGTTGCGCAAAATTAA   1029
                     |||||||||||||.|||||||||||||||
RBAM_025350__   1001 AAGCGGTGGTCTCTGTTGCGCAAAATTAA   1029


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