Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04109 and RBAM_025340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_04109___leuA.1.9828.seq
# -bsequence dna-align/RBAM_025340___leuA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04109___leuA-RBAM_025340___leuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04109___leuA-RBAM_025340___leuA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04109___leuA
# 2: RBAM_025340___leuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1567
# Identity: 1169/1567 (74.6%)
# Similarity: 1169/1567 (74.6%)
# Gaps: 83/1567 ( 5.3%)
# Score: 4480.0
#
#
#=======================================
BSNT_04109___ 0 -------------------------------------------------- 0
RBAM_025340__ 1 TTGCGCAAAATTAATGTTTTCGACACGACCCTTCGTGACGGTGAACAATC 50
BSNT_04109___ 1 -------------TTGAATACACAGGAGAAACTTGCCATAGCTAAGCAGC 37
.|.|||.|.|.|||||||||.||.|||||.|||||||
RBAM_025340__ 51 CCCCGGGGTCAACCTCAATTCCCGGGAGAAACTGGCGATAGCCAAGCAGC 100
BSNT_04109___ 38 TCGAAAGACTCGGGGCAGATATCATTGAAGCGGGATTTCCCGCTTCGTCC 87
|.|||||||||||||..||.||.|||||||||||||||||||||||.|||
RBAM_025340__ 101 TTGAAAGACTCGGGGTGGACATTATTGAAGCGGGATTTCCCGCTTCATCC 150
BSNT_04109___ 88 CGAGGTGACTTTTTAGCTGTTCAGGAAATCGCTAGAACCATTAAAAATTG 137
||||||||.||||||||.||.|||||||||||.|||||.|||||||||||
RBAM_025340__ 151 CGAGGTGATTTTTTAGCCGTGCAGGAAATCGCAAGAACGATTAAAAATTG 200
BSNT_04109___ 138 TTCAGTGACTGGTCTGGCCCGTTGTGTAAAAGGTGATATTGATGCTGCTT 187
|||.||.||.||.||.|||||.|.|||.||||||||.||.||.||.||.|
RBAM_025340__ 201 TTCGGTAACAGGGCTTGCCCGATCTGTCAAAGGTGACATCGACGCAGCCT 250
BSNT_04109___ 188 GGGAAGCGTTAAAGGATGGTGCTTA-CCCGAGAATTCATGTTTTTATCGC 236
||||||||.|.||.||.|| |.|.| ||||.|.|||||..|.||||||||
RBAM_025340__ 251 GGGAAGCGCTGAAAGACGG-GGTCAGCCCGCGGATTCACATCTTTATCGC 299
BSNT_04109___ 237 CACATCGGACATTCATTTGAAACACAAGCTGAAAATGACACGTGAGCAAG 286
|||.||.|||||||||.||||.||.||||||||||||||.||.||..|.|
RBAM_025340__ 300 CACTTCTGACATTCATCTGAAGCATAAGCTGAAAATGACGCGGGAAGAGG 349
BSNT_04109___ 287 TCATTGAAAGAGCAGTTGAAATGGTGACATACGCAAAAGAACGTTTTCCG 336
|.|..||||.|||.|||||||||||||..||.|||||||||||.||||||
RBAM_025340__ 350 TTAAGGAAAAAGCGGTTGAAATGGTGAAGTATGCAAAAGAACGCTTTCCG 399
BSNT_04109___ 337 GTTGTGCAATGGTCAGCTGAAGATGCCTGCCGCACTGAGCTGCCGTTTCT 386
.|.||.|||||||||||.|||||.||.||||||||.||.||.||||||||
RBAM_025340__ 400 ATCGTTCAATGGTCAGCAGAAGACGCATGCCGCACCGAACTTCCGTTTCT 449
BSNT_04109___ 387 GGCAGAAATCGTCGAGAAAGTGATTGACGCAGGCGCCAGTGTTATCAATC 436
|||.||||||||.||..||||||||||.||.|||||.||.||.|||||.|
RBAM_025340__ 450 GGCTGAAATCGTTGAAGAAGTGATTGATGCCGGCGCGAGCGTCATCAACC 499
BSNT_04109___ 437 TTCCAGACACTGTCGGCTACCTGGCTCCAGCGGAATACGGAAATATCTTT 486
|.||.||||||||.||.||||||.|.||.|..|||||||||||.||||||
RBAM_025340__ 500 TGCCGGACACTGTAGGTTACCTGACGCCGGATGAATACGGAAACATCTTT 549
BSNT_04109___ 487 AAATATATGAAGGAAAACGTTCCGAACATTCACAAAGC-----AAAGCTT 531
|||||||||||||||.||||||||||.|| .||| |||||||
RBAM_025340__ 550 AAATATATGAAGGAACACGTTCCGAATAT-----CAGCCGGGTAAAGCTT 594
BSNT_04109___ 532 TCAGCCCACTGTCATGATGATTTAGGAATGGCAGTTGCAAACTCTCTTGC 581
||||||||.||.||.||||||.|.||||||||.|||||.|||||.|||.|
RBAM_025340__ 595 TCAGCCCATTGCCACGATGATCTCGGAATGGCGGTTGCCAACTCGCTTTC 644
BSNT_04109___ 582 TGCGATTGAAAATGGCGCTGATCAAATCGAATGCGCTGTGAACGGGATCG 631
.||.|||||.||.||||||||||||||.||||||||..|.|||||.||.|
RBAM_025340__ 645 GGCAATTGAGAACGGCGCTGATCAAATTGAATGCGCCATTAACGGCATAG 694
BSNT_04109___ 632 GTGAAAGAGCCGGAAACGCGGCATTAGAGGAAATTGCCGTAGCCCTCCAT 681
|.|||||||||||.||.||.||..||||||||||.|||||.||.||.|||
RBAM_025340__ 695 GAGAAAGAGCCGGGAATGCCGCGCTAGAGGAAATCGCCGTTGCGCTTCAT 744
BSNT_04109___ 682 ACCAGAAAAGATTTCTACCAAGTCGAAACAGGCATTACACTGAACGAGAT 731
..||||||.||.....|.||||.|||..||....|||..||..|.|| ||
RBAM_025340__ 745 GTCAGAAATGACGCGCATCAAGCCGATTCATCTCTTAATCTTCATGA-AT 793
BSNT_04109___ 732 T-AAGAGAACAAGTGATTTAGTAAGCAAACTGACAGGCATGGCTGTCCCA 780
| |||.|.||.||||||.|.||.|||||||||||.||||||||.||.||.
RBAM_025340__ 794 TGAAGCGGACGAGTGATCTTGTCAGCAAACTGACGGGCATGGCCGTTCCC 843
BSNT_04109___ 781 CGCAACAAAGCGGTTGTTGGAGATAATGCATTTGCTCATGAATCAGGCAT 830
|||||.|||||..|.||.||||||||.||.||.||.|||||.||.|||||
RBAM_025340__ 844 CGCAATAAAGCAATCGTCGGAGATAACGCTTTCGCACATGAGTCCGGCAT 893
BSNT_04109___ 831 CCATCAGGACGGCTTTTTAAAGGAAAAATCGACTTATGAAATTATTTCAC 880
.||.||.|||||.||..|.||.||||||||.||.||||||||.|||||||
RBAM_025340__ 894 TCACCAAGACGGTTTCCTGAAAGAAAAATCAACATATGAAATCATTTCAC 943
BSNT_04109___ 881 CGGAGCTTGTCGGCGTAACCGCAGATGCGCTTGTCCTAGGTAAACATTCC 930
||||.|||||||||||.||.||.||||||||.||.||.||.||.||||||
RBAM_025340__ 944 CGGAACTTGTCGGCGTGACTGCTGATGCGCTCGTACTCGGAAAGCATTCC 993
BSNT_04109___ 931 GGACGCCACGCATTTAAAGACCGGCTGACT--GCTTTAGGATTCCAATTT 978
||.||||||||.||.||||||||.||||.| |||| ||||||||.|||
RBAM_025340__ 994 GGGCGCCACGCGTTCAAAGACCGCCTGAATACGCTT--GGATTCCAGTTT 1041
BSNT_04109___ 979 GACAGTGAAGAGATTAATAAATTCTTTACGATGTTCAAAGAGTTGACTGA 1028
||.|||||.||.||.|||||||..|||||||||||.|||||..||||.||
RBAM_025340__ 1042 GATAGTGATGAAATCAATAAATATTTTACGATGTTTAAAGAACTGACCGA 1091
BSNT_04109___ 1029 GAAGAAAAAAGAAATCACTGATGAGGATCTTGTTTCTCTTATTTTAGAAG 1078
.||||||||||||||.||.|||||.||.||..||||||||||||||||||
RBAM_025340__ 1092 AAAGAAAAAAGAAATTACCGATGATGACCTGATTTCTCTTATTTTAGAAG 1141
BSNT_04109___ 1079 AAAAAGTAACAGATCGCAAGATTGGGTATGAATTTCTTTCTCTGCAAGTA 1128
|||||||.|||||....||.||.||.|||||||||.|.|||||||||||.
RBAM_025340__ 1142 AAAAAGTGACAGACAAAAAAATCGGCTATGAATTTTTGTCTCTGCAAGTG 1191
BSNT_04109___ 1129 CATTACGGAACAAGTCAGGTCCCTACGGCTACTCTTTCGTTGAAAAATCA 1178
||||||||.||...||||||.||.||.||.||..|.||.||.||||||||
RBAM_025340__ 1192 CATTACGGGACGTCTCAGGTGCCGACTGCAACAGTCTCTTTAAAAAATCA 1241
BSNT_04109___ 1179 AGAAAATGCAGAGCTTATTCAGGAAGCTGCAACTGGAGCTGGAAGTGTGG 1228
.|||||.|.|.||||.||.||.||.||.|||||.||.||.||.||.||.|
RBAM_025340__ 1242 GGAAAACGAACAGCTGATGCAAGAGGCGGCAACGGGGGCGGGCAGCGTAG 1291
BSNT_04109___ 1229 AAGCAATCTACAATACGCTTGAGCGCTGCATCGATAAGGACGTGGAGCTT 1278
||||..|.||.||||||||.|.|||||||||||||||..|..|.||.||.
RBAM_025340__ 1292 AAGCCGTTTATAATACGCTCGGGCGCTGCATCGATAAAAATATTGAACTG 1341
BSNT_04109___ 1279 TTAGACTACCGCATTCAGTCTAACAGAAAAGGCGAAGATGCATTTGCCCA 1328
..|||||||||||||||.||.|||.|.|||||||||||.||..|.||.||
RBAM_025340__ 1342 ACAGACTACCGCATTCAATCCAACCGGAAAGGCGAAGACGCGCTGGCTCA 1391
BSNT_04109___ 1329 GGTGTATGTAAGAGTTTTGGTGAACGGAAAAGAATCAGCAGGTCGGGGCA 1378
.||.|.|||.|||||....||||||||||||||||||.||||.|||||.|
RBAM_025340__ 1392 AGTTTTTGTCAGAGTGACCGTGAACGGAAAAGAATCATCAGGGCGGGGAA 1441
BSNT_04109___ 1379 TAGCGCAAGACGTATTAGAAGCATCAGCGAAAGCCTATTTGAACGCAGTC 1428
|.|||||.||.||..|.|||||.||.||.|||||.|||.|||||||.||.
RBAM_025340__ 1442 TCGCGCAGGATGTTCTGGAAGCTTCTGCTAAAGCTTATCTGAACGCCGTG 1491
BSNT_04109___ 1429 AACCGTCAATTGGTTTTCCAGTCGAATATGAG-CGGATTGAAAAACCACA 1477
|||||.||..||||..|..|.|..||| |.|| ||||||.||.|..||.|
RBAM_025340__ 1492 AACCGGCAGCTGGTGCTGGATTGCAAT-TTAGACGGATTAAAGAGACAGA 1540
BSNT_04109___ 1478 CAGCTGTCGGATCATAA 1494
|.||.|||||.||.|||
RBAM_025340__ 1541 CTGCGGTCGGCTCGTAA 1557
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.