Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04108 and RBAM_025330
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:29
# Commandline: needle
# -asequence dna-align/BSNT_04108___leuB.1.9828.seq
# -bsequence dna-align/RBAM_025330___leuB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04108___leuB-RBAM_025330___leuB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04108___leuB-RBAM_025330___leuB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04108___leuB
# 2: RBAM_025330___leuB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1129
# Identity: 854/1129 (75.6%)
# Similarity: 854/1129 (75.6%)
# Gaps: 62/1129 ( 5.5%)
# Score: 3216.0
#
#
#=======================================
BSNT_04108___ 1 TTGAAGAAACGTATTGCTCTATTGCCCGGAGACGGGATCGGCCCTGAAGT 50
|||||.|||||.||||||.|..|||||||.|||||.|||||.||.|||||
RBAM_025330__ 1 TTGAAAAAACGCATTGCTTTGCTGCCCGGTGACGGAATCGGACCGGAAGT 50
BSNT_04108___ 51 ATTAGAATCAGCGACAGACGTACTGAAAAGTGTTGCCGAACGCTTTAACC 100
....|||||||||.||||.|||.|||||||.||||||||||..||....|
RBAM_025330__ 51 GGCGGAATCAGCGGCAGATGTATTGAAAAGCGTTGCCGAACAATTCGGAC 100
BSNT_04108___ 101 ATGAATTTGAATTTGAATATGGCCTGATTGGAGGGGCGGCTATTGATGAA 150
|||||||||||||||||.|.||.|||||.||.||.|||||.|||||.|..
RBAM_025330__ 101 ATGAATTTGAATTTGAAAACGGACTGATCGGGGGAGCGGCCATTGACGCC 150
BSNT_04108___ 151 CATCATAACCCCCTCCCGGAGGAAACCGTTGCTGCTTGT-AAAAATGCAG 199
|||||.||||||||.||.|||||.||.||.|||..|||| |||.|| |.|
RBAM_025330__ 151 CATCAAAACCCCCTTCCTGAGGAGACGGTGGCTCTTTGTGAAAGAT-CCG 199
BSNT_04108___ 200 ACGCGATATTGCTTGGTGCTGTCGGCGGACCGAAATGGGATCAAAATCCT 249
||||.||..||||.||.||.||||||||||||||||||||.|||||||||
RBAM_025330__ 200 ACGCCATCCTGCTCGGGGCAGTCGGCGGACCGAAATGGGACCAAAATCCT 249
BSNT_04108___ 250 TCGGAACTGAGACCGGAAAAAGGGCTGCTCAGCATCAGAAAACAGCTTGA 299
.||||.||.||||||||||||||.||||||.|||||||||||.|.||.|.
RBAM_025330__ 250 CCGGAGCTCAGACCGGAAAAAGGCCTGCTCGGCATCAGAAAAAAACTCGG 299
BSNT_04108___ 300 TTTGTTTGCGAATTTACGGCCTGTGAAGGTATTTGAAAGCCTTTCTGATG 349
..|||||||.|||.|.||.||.||||..||||||||||||||.|||||.|
RBAM_025330__ 300 CCTGTTTGCCAATCTGCGTCCCGTGACCGTATTTGAAAGCCTGTCTGAGG 349
BSNT_04108___ 350 CTTCGCCTTTGAAAAAAGAATATAT-AGATAAT----GTTGATTTCGTTA 394
|.||.||..|||||||||||||||| || ||.||.||.||.|
RBAM_025330__ 350 CGTCTCCGCTGAAAAAAGAATATATCAG-----CGGCGTCGACTTTGTAA 394
BSNT_04108___ 395 TCGTTCGTGAACTCACAGGCGGCTTGTATTTCGGCCAGCCGAGCAAACGC 444
||||..|.|||||.||.||||||.|.||||||||..|.|||||||.||..
RBAM_025330__ 395 TCGTCAGGGAACTGACGGGCGGCCTCTATTTCGGAGAACCGAGCAGACAG 444
BSNT_04108___ 445 TATGTAAACACTGAA---GGTGAGCAGGAAGCAGTAGATACACTGTTTTA 491
||||| ||.|||| ||.||..|||||||.||.|||||.||.|||||
RBAM_025330__ 445 TATGT---CAATGAAGCGGGAGAAAAGGAAGCGGTCGATACCCTTTTTTA 491
BSNT_04108___ 492 TAAGCGAACG--GAAATTGAACGAGTGATCAGAGAGGGCTTCAAAATGGC 539
||| |||.| |||||.|||||.||..|||||||.|.|||.||.|||||
RBAM_025330__ 492 TAA--GAAAGAAGAAATCGAACGCGTTGTCAGAGAAGCCTTTAAGATGGC 539
BSNT_04108___ 540 GGCAGCCAGAAAAGGCAAAGTGACCTCTGTAGATAAAGCGAATGTTCTTG 589
.||.|.|||||||||.||||||||.||.||.|||||.||||||||.|||.
RBAM_025330__ 540 TGCCGGCAGAAAAGGAAAAGTGACGTCCGTTGATAAGGCGAATGTGCTTT 589
BSNT_04108___ 590 AATCAAGCCGGCTGTGGCGTGAAGTGGCTGAGGACGTTGCGAAAGAATTT 639
..||||||.||||||||||.|||...||.|||||..|.||.|||||||||
RBAM_025330__ 590 CTTCAAGCAGGCTGTGGCGGGAAACCGCAGAGGAAATCGCAAAAGAATTT 639
BSNT_04108___ 640 CCTGATGTGAAGCTTGAGCACATGCTTGTGGATAACGCGGCCATGCAGCT 689
|||||.||||.||||||.||.||||||||.|||||.||.||.||||||||
RBAM_025330__ 640 CCTGACGTGACGCTTGAACATATGCTTGTCGATAATGCCGCGATGCAGCT 689
BSNT_04108___ 690 AATCTATGCACCGAATCAATTTGATGTCGTTGTGACTGAAAATATGTTCG 739
.|||||.||.||||..||||||||.|||.|.||.|||||.||||||||||
RBAM_025330__ 690 CATCTACGCTCCGAGCCAATTTGACGTCATCGTAACTGAGAATATGTTCG 739
BSNT_04108___ 740 GTGATATTTTAAGCGATGAAGCGTCCATGCTTACAGGCTCGCTCGGAATG 789
|.||||||||||||||||||||.||||||||.||||||||||||||.|||
RBAM_025330__ 740 GCGATATTTTAAGCGATGAAGCCTCCATGCTGACAGGCTCGCTCGGCATG 789
BSNT_04108___ 790 CTCCCGTCAGCCAGCCTATCAAGCTCTGGTCTTCATCTGTTTGAACCTGT 839
||.|||||||||||..|||||||.||.||||||||..||||||||||.||
RBAM_025330__ 790 CTGCCGTCAGCCAGTTTATCAAGTTCAGGTCTTCACTTGTTTGAACCCGT 839
BSNT_04108___ 840 TCATGGCTCCGCGCCTGATATTGCCGGTAAAGGGGTGGCAAATCCGTTCG 889
.|||||.||.||||||||.||.||||||||||||.||||.||||||||.|
RBAM_025330__ 840 GCATGGATCTGCGCCTGACATCGCCGGTAAAGGGATGGCCAATCCGTTTG 889
BSNT_04108___ 890 CAGCCATATTGTCAGCGGCAATGCTTTTGAGAACATCTTTCGGGCTTGAA 939
|.||.||.||.||||||||.||||||||||||||||||||||||||||||
RBAM_025330__ 890 CGGCGATTTTATCAGCGGCGATGCTTTTGAGAACATCTTTCGGGCTTGAA 939
BSNT_04108___ 940 GAGGAAGCGAAAGCTGTAGAAGATGCGGTAAACAAAG--TCTT------G 981
.|.||||||.|.||.||.|||.|.||||| ..||||| .||| |
RBAM_025330__ 940 AACGAAGCGCAGGCGGTGGAAAAGGCGGT-CGCAAAGGTGCTTGCAGACG 988
BSNT_04108___ 982 GCTTCTGGGAAAAGAACAAAAGATTTGGCACGG---GGTGAAGAGTTCAG 1028
||.|| .|.|||...|||.|.||.||| ||..||.| |.|
RBAM_025330__ 989 GCATC-------CGTACACGTGATATCGCCCGGGACGGCCAATA-TGC-- 1028
BSNT_04108___ 1029 CAGCACTCAGGCCATTACAGAGGAAGTTAAGGCAGCAATCATGAGTGAA- 1077
|.|.||.||.|.||||||.||..||||.||.||.|||.| |
RBAM_025330__ 1029 CGGAACGCATGACATTACTGAAAAAGTAAAAGCCGCATT---------AG 1069
BSNT_04108___ 1078 --------AATACAATTTCTAATGTGTGA 1098
|||||||..||||..||||||
RBAM_025330__ 1070 CCGGCTCGAATACAAAATCTATAGTGTGA 1098
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