Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04107 and RBAM_025320

See Amino acid alignment / Visit BSNT_04107 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:29
# Commandline: needle
#    -asequence dna-align/BSNT_04107___leuC.1.9828.seq
#    -bsequence dna-align/RBAM_025320___leuC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04107___leuC-RBAM_025320___leuC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04107___leuC-RBAM_025320___leuC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04107___leuC
# 2: RBAM_025320___leuC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1426
# Identity:    1159/1426 (81.3%)
# Similarity:  1159/1426 (81.3%)
# Gaps:          14/1426 ( 1.0%)
# Score: 4690.5
# 
#
#=======================================

BSNT_04107___      1 ATGATGCCTCGAACAATCATCGAAAAGATTTGGGATCAGCATATTGTAAA     50
                     |||||||||||||||||||||||||||||||||||||.||||.|||||||
RBAM_025320__      1 ATGATGCCTCGAACAATCATCGAAAAGATTTGGGATCGGCATGTTGTAAA     50

BSNT_04107___     51 ACATGGTGAGGGAAAGCCGGATCTTCTCTATATTGATTTGCACCTCATTC    100
                     |...|||||.|||||.||.||.|||||||||||||||.||||||||||||
RBAM_025320__     51 AAGCGGTGAAGGAAAACCCGACCTTCTCTATATTGATCTGCACCTCATTC    100

BSNT_04107___    101 ATGAGGTGACGTCTCCTCAGGCATTTGAAGGCTTGAGACAAAAGGGAAGA    150
                     ||||||||||||||||||||||.||||||||.||.|||||.|||||.|||
RBAM_025320__    101 ATGAGGTGACGTCTCCTCAGGCGTTTGAAGGGTTAAGACAGAAGGGGAGA    150

BSNT_04107___    151 AAGGTCAGAAGACCCCAAAACACATTTGCGACAATGGACCACAACATCCC    200
                     |||||||||.|.||.||.||.|||||.|||||.|||||||||||.||.||
RBAM_025320__    151 AAGGTCAGACGGCCGCAGAATACATTCGCGACGATGGACCACAATATTCC    200

BSNT_04107___    201 GACTGTCAATCGTTTTGAGATAAAGGATGAAGTTGCGAAACGCCAGGTAA    250
                     |||.|||||.||||||||.||.||.||||||||.||.||.|||||.||||
RBAM_025320__    201 GACCGTCAACCGTTTTGACATTAAAGATGAAGTCGCAAAGCGCCAAGTAA    250

BSNT_04107___    251 CGGCGCTTGAAAGAAACTGTGAGGAATTTGGCGTGCGCCTTGCCGATCTT    300
                     |.|||||||||.|.||.||||||||.||||||||.||.|||||.||||||
RBAM_025320__    251 CCGCGCTTGAACGGAATTGTGAGGAGTTTGGCGTCCGTCTTGCGGATCTT    300

BSNT_04107___    301 CACAGTGTGGATCAAGGGATTGTCCATGTCGTCGGACCTGAACTGGGCTT    350
                     |||||.|..||.||.|||||.||.||.||.|||||.|||||.||.||..|
RBAM_025320__    301 CACAGCGCAGACCAGGGGATCGTTCACGTAGTCGGGCCTGAGCTTGGTCT    350

BSNT_04107___    351 AACGCTTCCAGGGAAAACGATTGTGTGCGGGGACAGTCATACATCAACAC    400
                     .||.|||||.|||||||||||.||.|||||.|||||.||||||||.||.|
RBAM_025320__    351 GACACTTCCGGGGAAAACGATCGTTTGCGGAGACAGCCATACATCGACTC    400

BSNT_04107___    401 ATGGTGCTTTCGGCGCTCTTGCATTTGGGATCGGGACGAGTGAAGTTGAA    450
                     |.|||||.|||||.||.|||||.||.||.|||||.||.|||||.||.|||
RBAM_025320__    401 ACGGTGCATTCGGGGCGCTTGCCTTCGGTATCGGCACAAGTGAGGTGGAA    450

BSNT_04107___    451 CATGTCCTTTCCACACAGACACTTTGGCAGCAGCGTCCAAAAACACTTGA    500
                     |||||.||||||||.||||||.|.|||||||||||.||.|||||.|||||
RBAM_025320__    451 CATGTTCTTTCCACTCAGACATTGTGGCAGCAGCGGCCGAAAACGCTTGA    500

BSNT_04107___    501 AGTGCGCGTAGATGGAACGCTTCAAAAAGGGGTAACGGCAAAGGATGTCA    550
                     |.|.|||||.||.||||||||.||||||||.||.||.||.||||||||||
RBAM_025320__    501 AATCCGCGTTGACGGAACGCTCCAAAAAGGAGTGACCGCGAAGGATGTCA    550

BSNT_04107___    551 TCCTTG-CTGTCATCGGCAAATACGGTGTGAAATTCGGCACAGGCTACGT    599
                     | |||| |.||||||||.||||||||.|||||||||||.||.||.||.||
RBAM_025320__    551 T-CTTGTCGGTCATCGGAAAATACGGGGTGAAATTCGGTACCGGATATGT    599

BSNT_04107___    600 CATTGAATACACTGGGGAAGTATTCAGAAATATGACGATGGATGAACGAA    649
                     ||||||||||||.|||||||||||||||||.|||.|.|||||.|||||.|
RBAM_025320__    600 CATTGAATACACCGGGGAAGTATTCAGAAACATGTCTATGGACGAACGCA    649

BSNT_04107___    650 TGACTGTTTGTAACATGTCAATTGAAGCAGGAGCAAGAGCAGGTTTGATT    699
                     ||||.||.||.||.|||||.||.|||||.|||||..|.||.||..||||.
RBAM_025320__    650 TGACCGTCTGCAATATGTCGATAGAAGCGGGAGCGCGGGCGGGACTGATC    699

BSNT_04107___    700 GCACCTGACGAGGTGACGTTTGAATATTGCAAAAATCGCAAGTACACGCC    749
                     ||.||.||.||...||||.||||||||||.|||||.||.||.|||.||||
RBAM_025320__    700 GCTCCGGATGACACGACGATTGAATATTGTAAAAACCGTAAATACGCGCC    749

BSNT_04107___    750 AAAAGGCGAAGAATTTGACAAGGCCGTAGAGGAATGGAAGGCGCTGCGCA    799
                     |||||||||.||||||||.||.||||..|..||||||||.|||.|....|
RBAM_025320__    750 AAAAGGCGAGGAATTTGAAAAAGCCGCCGCAGAATGGAAAGCGTTAAAAA    799

BSNT_04107___    800 CAGACCCGGGCGCTGTTTACGATAAATCTATCGTCCTTGACGGCAACAAA    849
                     |.||.||||||||.||.||||||.|.||.|||||..|.|||||||.|.|.
RBAM_025320__    800 CCGATCCGGGCGCCGTATACGATCATTCCATCGTGTTAGACGGCAGCGAG    849

BSNT_04107___    850 ATTTCCCCTATGGTGACATGGGGCATTAACCCTGGAATGGTTCTTCCTGT    899
                     |||||.||.|||||.|||||||||.|.||.||.||.|||||||||||.||
RBAM_025320__    850 ATTTCTCCAATGGTAACATGGGGCGTCAATCCCGGCATGGTTCTTCCGGT    899

BSNT_04107___    900 CGATTCTGAAGTTCCTGCGCCGGAAA-GCTT--TTCTGCAGAAGATGATA    946
                     ||||.|..||.|.||.|||||||||| |.||  ||||   |||||.|.||
RBAM_025320__    900 CGATGCCCAAATACCGGCGCCGGAAACGATTGATTCT---GAAGACGGTA    946

BSNT_04107___    947 AAAAAGAAGCGATTCGCGCTTATGAATATATGGGACTGACTCCTCATCAG    996
                     ||||||||||.||.|||||.||.|||||.||||||.|..|.||..||||.
RBAM_025320__    947 AAAAAGAAGCCATCCGCGCGTACGAATACATGGGAATCTCACCGAATCAA    996

BSNT_04107___    997 AAAATTGAAGACATTAAAGTGGAGCACGTATTTATCGGTTCCTGCACAAA   1046
                     |||||||||||.||||||||.|||||.||.||||||||.|||||.|||||
RBAM_025320__    997 AAAATTGAAGATATTAAAGTCGAGCATGTGTTTATCGGCTCCTGTACAAA   1046

BSNT_04107___   1047 TTCCCGCATGACTGACCTTCGACAGGCTGCTGACATGATCAAAGG--GAA   1094
                     |||.||.|||||.||.|||||.||||||||.||.|||||||||||  || 
RBAM_025320__   1047 TTCGCGGATGACCGATCTTCGCCAGGCTGCGGATATGATCAAAGGCCGA-   1095

BSNT_04107___   1095 GAAGGTAGCTGACAGCGTAAGGGCCATCGTCGTGCCCGGATCCCAAAGCG   1144
                      ||.||.|||||||||||.||.|||||.||.||.||.||.||.|||||||
RBAM_025320__   1096 -AAAGTCGCTGACAGCGTCAGAGCCATTGTGGTCCCGGGTTCTCAAAGCG   1144

BSNT_04107___   1145 TGAAGCTTCAGGCTGAAAAAGAAGGGCTTGACC-AGATTTTCTTGGAAGC   1193
                     ||||.|..|||||.|||.||||||||||..||| .|..|||| |.||.||
RBAM_025320__   1145 TGAAACAGCAGGCCGAAGAAGAAGGGCTGCACCGCGTGTTTC-TCGAGGC   1193

BSNT_04107___   1194 TGGATTTGAATGGAGAGAGTCAGGCTGCAGCATGTGTTTGAGTATGAATA   1243
                     .|||||||||||||||||.|||||||||||||||||..|.||||||||.|
RBAM_025320__   1194 CGGATTTGAATGGAGAGAATCAGGCTGCAGCATGTGCCTCAGTATGAACA   1243

BSNT_04107___   1244 ATGATGTTGTTCCTGAGGGAGAGCGCTGTGCATCAACCTCTAACCGCAAC   1293
                     |||||||.||.|||||.||.||.||.||.||.||.||.||.|||||||||
RBAM_025320__   1244 ATGATGTCGTGCCTGAAGGGGAACGATGCGCTTCCACTTCCAACCGCAAC   1293

BSNT_04107___   1294 TTCGAGGGCAGACAAGGAAAAGGTGCAAGAACACATCTCGTCAGCCCGGC   1343
                     |||||.||||||||.||||||||.||.||||||||.||.|||||.|||||
RBAM_025320__   1294 TTCGAAGGCAGACAGGGAAAAGGCGCGAGAACACACCTTGTCAGTCCGGC   1343

BSNT_04107___   1344 GATGGCTGCGATGGCTGCCATTCACGGACACTTCGTTGATGTCAGAAAGT   1393
                     ||||||.||.|||||.|||||||||||.||.|||||.|||||.|||||||
RBAM_025320__   1344 GATGGCGGCAATGGCAGCCATTCACGGGCATTTCGTCGATGTAAGAAAGT   1393

BSNT_04107___   1394 TTTATCAGGAAAAAACAGTTGTGTAA   1419
                     |||||||.||||||||||||||||||
RBAM_025320__   1394 TTTATCAAGAAAAAACAGTTGTGTAA   1419


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