Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04101 and RBAM_025280

See Amino acid alignment / Visit BSNT_04101 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:28
# Commandline: needle
#    -asequence dna-align/BSNT_04101___clpX.1.9828.seq
#    -bsequence dna-align/RBAM_025280___clpX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04101___clpX-RBAM_025280___clpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04101___clpX-RBAM_025280___clpX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04101___clpX
# 2: RBAM_025280___clpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1263
# Identity:    1052/1263 (83.3%)
# Similarity:  1052/1263 (83.3%)
# Gaps:           0/1263 ( 0.0%)
# Score: 4416.0
# 
#
#=======================================

BSNT_04101___      1 ATGTTTAAATTTAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGTGG     50
                     |||||||||||.||||||||||||||||||||.||||||||||||||.||
RBAM_025280__      1 ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGG     50

BSNT_04101___     51 AAAAACACAAGATCAGGTTCGTAAGCTTGTAGCTGGACCTGGTGTATATA    100
                     ||||||.||||||||||||||||||||.||.||.|||||.||||||||||
RBAM_025280__     51 AAAAACGCAAGATCAGGTTCGTAAGCTGGTTGCAGGACCGGGTGTATATA    100

BSNT_04101___    101 TATGTGACGAATGTATCGAACTCTGCACTGAAATTGTAGAGGAAGAACTC    150
                     ||||.|||||||||||.||.|||||.||.|||||.|||||||||||.|||
RBAM_025280__    101 TATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTC    150

BSNT_04101___    151 GGAACAGAAGAAGAAGTAGAATTTAAAGACGTACCAAAGCCTCAGGAAAT    200
                     ||.||||||||||||||.||||||||||||||.||.|||||.||||||||
RBAM_025280__    151 GGTACAGAAGAAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAAT    200

BSNT_04101___    201 TCGCGAAATTTTGAATGAATATGTCATCGGCCAAGATCAAGCGAAGAAAT    250
                     .||.||.|||.|||||||||||||||||||.||.|||||.||||||||||
RBAM_025280__    201 CCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAGGCGAAGAAAT    250

BSNT_04101___    251 CACTTGCTGTTGCTGTGTATAACCACTATAAGCGCATTAACTCCAACAGC    300
                     |||||||.|||||.||.||.|||||.||.||.|||||.|||||||||||.
RBAM_025280__    251 CACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGT    300

BSNT_04101___    301 AAAGTTGATGATGTTGAGCTTTCAAAAAGTAATATTTCATTAATCGGCCC    350
                     |||||.||||||||.||||||||.||||||||||||||.||||||||.||
RBAM_025280__    301 AAAGTGGATGATGTCGAGCTTTCTAAAAGTAATATTTCTTTAATCGGACC    350

BSNT_04101___    351 TACGGGAAGCGGTAAAACCCTTCTGGCGCAAACATTGGCTCGCATTTTAA    400
                     .||.||||||||.|||||.|||||.||.||.||..|.||.||.|||.|.|
RBAM_025280__    351 GACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA    400

BSNT_04101___    401 ATGTGCCGTTTGCGATTGCGGACGCTACATCTTTGACTGAAGCTGGATAC    450
                     |.||||||||||||||.|||||||||||||||.||||||||||.|||||.
RBAM_025280__    401 ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATAT    450

BSNT_04101___    451 GTGGGTGAAGATGTAGAGAATATTCTCTTGAAGCTCATCCAAGCTGCTGA    500
                     ||.|||||.||.|||||.||.||.|||.|.|||||.||.||.||.||.||
RBAM_025280__    451 GTCGGTGAGGACGTAGAAAACATCCTCCTCAAGCTGATTCAGGCAGCAGA    500

BSNT_04101___    501 TTATGATGTGGAAAAAGCCGAAAAAGGCATTATCTATATTGATGAAATCG    550
                     .|||||||||||||||||.||||||||||||||.|||||.||||||||||
RBAM_025280__    501 CTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCG    550

BSNT_04101___    551 ATAAAGTGGCTAGAAAATCTGAAAACCCGTCTATCACACGTGATGTGTCA    600
                     |||||||.||..||||||||||||||||.||.||.|||||.||.||.|||
RBAM_025280__    551 ATAAAGTAGCGCGAAAATCTGAAAACCCATCCATTACACGCGACGTATCA    600

BSNT_04101___    601 GGTGAGGGTGTACAGCAGGCATTGCTTAAAATTCTTGAGGGTACAGTGGC    650
                     ||.||.||.||.||||||||.|||||.|||||||||||.||.||.||.||
RBAM_025280__    601 GGCGAAGGCGTTCAGCAGGCGTTGCTGAAAATTCTTGAAGGAACGGTTGC    650

BSNT_04101___    651 AAGCGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCATTC    700
                     ||||||.|||||||||||.|||||.||.|||||||||||.||||||||.|
RBAM_025280__    651 AAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCC    700

BSNT_04101___    701 AAATTGACACAACAAATATTTTGTTCATTTGCGGCGGAGCTTTCGATGGT    750
                     |.||.||.||.||.||||||.||||||||||||||||.||.||.||.||.
RBAM_025280__    701 AGATCGATACGACGAATATTCTGTTCATTTGCGGCGGTGCATTTGACGGC    750

BSNT_04101___    751 ATCGAACAAATCATCAAACGCCGTTTAGGCCAAAAAGTGATTGGATTCGG    800
                     ||.||||||||.||||||||||||.|.||.||||||||.||.||.|||||
RBAM_025280__    751 ATTGAACAAATTATCAAACGCCGTCTCGGACAAAAAGTCATCGGTTTCGG    800

BSNT_04101___    801 TGCCGACAATAAAGCTGCTGATCTTGAGAAAGAAGATCTTCTTTCAAAAG    850
                     ..|.||.||||||||.||.||.|||||.||||||||.||.|||||.||||
RBAM_025280__    801 CTCAGATAATAAAGCGGCAGACCTTGAAAAAGAAGAACTGCTTTCTAAAG    850

BSNT_04101___    851 TGCTTCCAGAAGATTTGCTCCGTTTCGGGTTAATTCCTGAATTTATCGGA    900
                     |.|||||.|||||.||||||||||||||..|.|||||||||||.|||||.
RBAM_025280__    851 TTCTTCCGGAAGACTTGCTCCGTTTCGGTCTGATTCCTGAATTCATCGGC    900

BSNT_04101___    901 CGTCTTCCGGTTATTGCAAGCCTTGAAAAGCTTGACGAAGAAGCATTGGT    950
                     ||||||||.||.||||||||||||||..|||||||||||...|||.||||
RBAM_025280__    901 CGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGT    950

BSNT_04101___    951 TGCGATCTTAACAAAACCGAAAAACGCTCTTGTTAAGCAATTCAAGAAAA   1000
                     ||..||..|.||.||||||||||||||.||.||.||.||||.||||||||
RBAM_025280__    951 TGAAATTCTGACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAA   1000

BSNT_04101___   1001 TGCTTGAGCTTGACAACGTTGAGCTTGAGTTTGAAGAAGAAGCGCTTTCT   1050
                     ||.|.||.|||||..|.||.||||||||.||||||||.||.||..|.|||
RBAM_025280__   1001 TGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGACGAGGCATTATCT   1050

BSNT_04101___   1051 GAAATTGCTAAAAAAGCAATTGAACGCAAGACTGGAGCACGCGGACTCCG   1100
                     ||||||||.||||||||.||.||.||.||.||.||.||||||||.||.||
RBAM_025280__   1051 GAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCG   1100

BSNT_04101___   1101 TTCTATCATTGAAGGCATCATGCTTGATGTGATGTTTGAGCTGCCTTCTC   1150
                     |||||||||||||||||||||||||||.||.||||||||.|||||.||.|
RBAM_025280__   1101 TTCTATCATTGAAGGCATCATGCTTGACGTCATGTTTGATCTGCCGTCCC   1150

BSNT_04101___   1151 GTGATGACATTGAAAAATGTGTAATCACCGGGGCAACTGTGACACACGGA   1200
                     |.|||||.||||||||||||||.||.|||||.||.||.||..||.||||.
RBAM_025280__   1151 GCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT   1200

BSNT_04101___   1201 GAGCCTCCTCGCCTCTTATTAAAAGACGGCACTGAGGTAAGCCAAGATAA   1250
                     ||..|.||.||.||..||||||||||||||||.|..||..||||||||||
RBAM_025280__   1201 GAAGCACCGCGTCTTGTATTAAAAGACGGCACAGTTGTCGGCCAAGATAA   1250

BSNT_04101___   1251 AACATCTGCATAA   1263
                     ||||||.||||||
RBAM_025280__   1251 AACATCAGCATAA   1263


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