Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04101 and RBAM_025280
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_04101___clpX.1.9828.seq
# -bsequence dna-align/RBAM_025280___clpX.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04101___clpX-RBAM_025280___clpX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04101___clpX-RBAM_025280___clpX.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04101___clpX
# 2: RBAM_025280___clpX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1263
# Identity: 1052/1263 (83.3%)
# Similarity: 1052/1263 (83.3%)
# Gaps: 0/1263 ( 0.0%)
# Score: 4416.0
#
#
#=======================================
BSNT_04101___ 1 ATGTTTAAATTTAACGAGGAAAAAGGACAATTAAAATGCTCGTTCTGTGG 50
|||||||||||.||||||||||||||||||||.||||||||||||||.||
RBAM_025280__ 1 ATGTTTAAATTCAACGAGGAAAAAGGACAATTGAAATGCTCGTTCTGCGG 50
BSNT_04101___ 51 AAAAACACAAGATCAGGTTCGTAAGCTTGTAGCTGGACCTGGTGTATATA 100
||||||.||||||||||||||||||||.||.||.|||||.||||||||||
RBAM_025280__ 51 AAAAACGCAAGATCAGGTTCGTAAGCTGGTTGCAGGACCGGGTGTATATA 100
BSNT_04101___ 101 TATGTGACGAATGTATCGAACTCTGCACTGAAATTGTAGAGGAAGAACTC 150
||||.|||||||||||.||.|||||.||.|||||.|||||||||||.|||
RBAM_025280__ 101 TATGCGACGAATGTATTGAGCTCTGTACAGAAATCGTAGAGGAAGAGCTC 150
BSNT_04101___ 151 GGAACAGAAGAAGAAGTAGAATTTAAAGACGTACCAAAGCCTCAGGAAAT 200
||.||||||||||||||.||||||||||||||.||.|||||.||||||||
RBAM_025280__ 151 GGTACAGAAGAAGAAGTCGAATTTAAAGACGTTCCGAAGCCGCAGGAAAT 200
BSNT_04101___ 201 TCGCGAAATTTTGAATGAATATGTCATCGGCCAAGATCAAGCGAAGAAAT 250
.||.||.|||.|||||||||||||||||||.||.|||||.||||||||||
RBAM_025280__ 201 CCGTGAGATTCTGAATGAATATGTCATCGGACAGGATCAGGCGAAGAAAT 250
BSNT_04101___ 251 CACTTGCTGTTGCTGTGTATAACCACTATAAGCGCATTAACTCCAACAGC 300
|||||||.|||||.||.||.|||||.||.||.|||||.|||||||||||.
RBAM_025280__ 251 CACTTGCGGTTGCGGTATACAACCATTACAAACGCATCAACTCCAACAGT 300
BSNT_04101___ 301 AAAGTTGATGATGTTGAGCTTTCAAAAAGTAATATTTCATTAATCGGCCC 350
|||||.||||||||.||||||||.||||||||||||||.||||||||.||
RBAM_025280__ 301 AAAGTGGATGATGTCGAGCTTTCTAAAAGTAATATTTCTTTAATCGGACC 350
BSNT_04101___ 351 TACGGGAAGCGGTAAAACCCTTCTGGCGCAAACATTGGCTCGCATTTTAA 400
.||.||||||||.|||||.|||||.||.||.||..|.||.||.|||.|.|
RBAM_025280__ 351 GACTGGAAGCGGGAAAACACTTCTTGCCCAGACGCTTGCGCGTATTCTGA 400
BSNT_04101___ 401 ATGTGCCGTTTGCGATTGCGGACGCTACATCTTTGACTGAAGCTGGATAC 450
|.||||||||||||||.|||||||||||||||.||||||||||.|||||.
RBAM_025280__ 401 ACGTGCCGTTTGCGATCGCGGACGCTACATCTCTGACTGAAGCCGGATAT 450
BSNT_04101___ 451 GTGGGTGAAGATGTAGAGAATATTCTCTTGAAGCTCATCCAAGCTGCTGA 500
||.|||||.||.|||||.||.||.|||.|.|||||.||.||.||.||.||
RBAM_025280__ 451 GTCGGTGAGGACGTAGAAAACATCCTCCTCAAGCTGATTCAGGCAGCAGA 500
BSNT_04101___ 501 TTATGATGTGGAAAAAGCCGAAAAAGGCATTATCTATATTGATGAAATCG 550
.|||||||||||||||||.||||||||||||||.|||||.||||||||||
RBAM_025280__ 501 CTATGATGTGGAAAAAGCAGAAAAAGGCATTATTTATATCGATGAAATCG 550
BSNT_04101___ 551 ATAAAGTGGCTAGAAAATCTGAAAACCCGTCTATCACACGTGATGTGTCA 600
|||||||.||..||||||||||||||||.||.||.|||||.||.||.|||
RBAM_025280__ 551 ATAAAGTAGCGCGAAAATCTGAAAACCCATCCATTACACGCGACGTATCA 600
BSNT_04101___ 601 GGTGAGGGTGTACAGCAGGCATTGCTTAAAATTCTTGAGGGTACAGTGGC 650
||.||.||.||.||||||||.|||||.|||||||||||.||.||.||.||
RBAM_025280__ 601 GGCGAAGGCGTTCAGCAGGCGTTGCTGAAAATTCTTGAAGGAACGGTTGC 650
BSNT_04101___ 651 AAGCGTACCGCCTCAAGGTGGACGTAAGCATCCTCATCAAGAATTCATTC 700
||||||.|||||||||||.|||||.||.|||||||||||.||||||||.|
RBAM_025280__ 651 AAGCGTGCCGCCTCAAGGAGGACGCAAACATCCTCATCAGGAATTCATCC 700
BSNT_04101___ 701 AAATTGACACAACAAATATTTTGTTCATTTGCGGCGGAGCTTTCGATGGT 750
|.||.||.||.||.||||||.||||||||||||||||.||.||.||.||.
RBAM_025280__ 701 AGATCGATACGACGAATATTCTGTTCATTTGCGGCGGTGCATTTGACGGC 750
BSNT_04101___ 751 ATCGAACAAATCATCAAACGCCGTTTAGGCCAAAAAGTGATTGGATTCGG 800
||.||||||||.||||||||||||.|.||.||||||||.||.||.|||||
RBAM_025280__ 751 ATTGAACAAATTATCAAACGCCGTCTCGGACAAAAAGTCATCGGTTTCGG 800
BSNT_04101___ 801 TGCCGACAATAAAGCTGCTGATCTTGAGAAAGAAGATCTTCTTTCAAAAG 850
..|.||.||||||||.||.||.|||||.||||||||.||.|||||.||||
RBAM_025280__ 801 CTCAGATAATAAAGCGGCAGACCTTGAAAAAGAAGAACTGCTTTCTAAAG 850
BSNT_04101___ 851 TGCTTCCAGAAGATTTGCTCCGTTTCGGGTTAATTCCTGAATTTATCGGA 900
|.|||||.|||||.||||||||||||||..|.|||||||||||.|||||.
RBAM_025280__ 851 TTCTTCCGGAAGACTTGCTCCGTTTCGGTCTGATTCCTGAATTCATCGGC 900
BSNT_04101___ 901 CGTCTTCCGGTTATTGCAAGCCTTGAAAAGCTTGACGAAGAAGCATTGGT 950
||||||||.||.||||||||||||||..|||||||||||...|||.||||
RBAM_025280__ 901 CGTCTTCCTGTCATTGCAAGCCTTGAGCAGCTTGACGAAACGGCACTGGT 950
BSNT_04101___ 951 TGCGATCTTAACAAAACCGAAAAACGCTCTTGTTAAGCAATTCAAGAAAA 1000
||..||..|.||.||||||||||||||.||.||.||.||||.||||||||
RBAM_025280__ 951 TGAAATTCTGACTAAACCGAAAAACGCACTCGTCAAACAATACAAGAAAA 1000
BSNT_04101___ 1001 TGCTTGAGCTTGACAACGTTGAGCTTGAGTTTGAAGAAGAAGCGCTTTCT 1050
||.|.||.|||||..|.||.||||||||.||||||||.||.||..|.|||
RBAM_025280__ 1001 TGTTAGAACTTGATGATGTCGAGCTTGAATTTGAAGACGAGGCATTATCT 1050
BSNT_04101___ 1051 GAAATTGCTAAAAAAGCAATTGAACGCAAGACTGGAGCACGCGGACTCCG 1100
||||||||.||||||||.||.||.||.||.||.||.||||||||.||.||
RBAM_025280__ 1051 GAAATTGCGAAAAAAGCGATCGAGCGTAAAACAGGCGCACGCGGCCTGCG 1100
BSNT_04101___ 1101 TTCTATCATTGAAGGCATCATGCTTGATGTGATGTTTGAGCTGCCTTCTC 1150
|||||||||||||||||||||||||||.||.||||||||.|||||.||.|
RBAM_025280__ 1101 TTCTATCATTGAAGGCATCATGCTTGACGTCATGTTTGATCTGCCGTCCC 1150
BSNT_04101___ 1151 GTGATGACATTGAAAAATGTGTAATCACCGGGGCAACTGTGACACACGGA 1200
|.|||||.||||||||||||||.||.|||||.||.||.||..||.||||.
RBAM_025280__ 1151 GCGATGATATTGAAAAATGTGTCATTACCGGAGCGACAGTCGCAGACGGT 1200
BSNT_04101___ 1201 GAGCCTCCTCGCCTCTTATTAAAAGACGGCACTGAGGTAAGCCAAGATAA 1250
||..|.||.||.||..||||||||||||||||.|..||..||||||||||
RBAM_025280__ 1201 GAAGCACCGCGTCTTGTATTAAAAGACGGCACAGTTGTCGGCCAAGATAA 1250
BSNT_04101___ 1251 AACATCTGCATAA 1263
||||||.||||||
RBAM_025280__ 1251 AACATCAGCATAA 1263
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