Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04098 and RBAM_025260
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:28
# Commandline: needle
# -asequence dna-align/BSNT_04098___lonA.1.9828.seq
# -bsequence dna-align/RBAM_025260___lonA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04098___lonA-RBAM_025260___lonA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04098___lonA-RBAM_025260___lonA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04098___lonA
# 2: RBAM_025260___lonA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2332
# Identity: 1900/2332 (81.5%)
# Similarity: 1900/2332 (81.5%)
# Gaps: 14/2332 ( 0.6%)
# Score: 7764.0
#
#
#=======================================
BSNT_04098___ 1 ATGGCAGAAGAATTAAAACGCAGCATCCCGCTCCTCCCTTTAAGAGGTTT 50
|||||||||||...|||||||||||||||||||||||||||||||||.||
RBAM_025260__ 1 ATGGCAGAAGATACAAAACGCAGCATCCCGCTCCTCCCTTTAAGAGGCTT 50
BSNT_04098___ 51 ATTAGTGTACCCGACGATGGTTTTGCATTTAGATGTAGGACGTGACAAGT 100
|||.||.||||||||.||||||||.||||||||||||||.||||||||||
RBAM_025260__ 51 ATTGGTATACCCGACAATGGTTTTACATTTAGATGTAGGCCGTGACAAGT 100
BSNT_04098___ 101 CGGTTCAGGCTCTTGAACAGGCAATGATGCATGATCATATGATATTTTTA 150
|||||||||||||||||||||||||||||||||||||||||||.||||||
RBAM_025260__ 101 CGGTTCAGGCTCTTGAACAGGCAATGATGCATGATCATATGATTTTTTTA 150
BSNT_04098___ 151 GCCACTCAGCAGGATATTTCGATAGACGAACCTGGTGAAGACGAGATTTT 200
||||||||||||||||||||||||||||||||.||||||||.||.|||||
RBAM_025260__ 151 GCCACTCAGCAGGATATTTCGATAGACGAACCGGGTGAAGAGGATATTTT 200
BSNT_04098___ 201 CACTGTCGGCACCTATACAAAAATTAAGCAAATGCTGAAGCTTCCGAACG 250
|.|.||||||||.||||||||||||||.||.|||||||||||.||.||||
RBAM_025260__ 201 CGCCGTCGGCACTTATACAAAAATTAAACAGATGCTGAAGCTGCCCAACG 250
BSNT_04098___ 251 GTACGATTCGTGTGTTGGTGGAGGGCCTCAAACGCGCCCAGATCGTCAAA 300
|||||||..|.|||.|.||.||.||..|..|.||.||.||||||.|..||
RBAM_025260__ 251 GTACGATCAGAGTGCTTGTAGAAGGAATTCAGCGGGCGCAGATCCTTGAA 300
BSNT_04098___ 301 TACAATGAACACGAGGATTACACGTCGGTCGACATTCAACTTATTCATGA 350
||||..||.|.|||.|||||.||.||||||||.||.||.||.||.|||||
RBAM_025260__ 301 TACACCGAGCTCGAAGATTATACTTCGGTCGATATACAGCTGATGCATGA 350
BSNT_04098___ 351 AGATGATTCAAAAGATACAGAAGACGAAGCATTGATGCGGACTTTGCTAG 400
.||||||||||||||....|||||||||||..|.||||||||..||||.|
RBAM_025260__ 351 GGATGATTCAAAAGACGTGGAAGACGAAGCGCTTATGCGGACGCTGCTGG 400
BSNT_04098___ 401 ACCACTTTGATCAGTACATAAAAATTTCTAAAAAAATCTCGGCCGAAACG 450
||||.|||||.|||||||||||||||||||||||||||||.||.||||||
RBAM_025260__ 401 ACCATTTTGACCAGTACATAAAAATTTCTAAAAAAATCTCCGCAGAAACG 450
BSNT_04098___ 451 TACGCCGCGGTTACTGATATCGAAGAGCCGGGGAGAATGGCAGACATCGT 500
||.||.||.||.||||||||.||||||||.||.||||||||.||.|||||
RBAM_025260__ 451 TATGCGGCTGTGACTGATATTGAAGAGCCCGGCAGAATGGCGGATATCGT 500
BSNT_04098___ 501 TGCTTCTCATCTGCCCCTTAAACTAAAGGATAAGCAGGATATTTTAGAAA 550
||||||||||||.||.||.|||.|||||||.||||||||.||||||||||
RBAM_025260__ 501 TGCTTCTCATCTCCCGCTGAAATTAAAGGACAAGCAGGACATTTTAGAAA 550
BSNT_04098___ 551 CGGCTGATGTCAAAGACAGGCTGAACAAGGTCATTGATTTTATTAATAAT 600
||||.|||.|.|||||..|.|||||.||||||||...||..|||.|||||
RBAM_025260__ 551 CGGCGGATATTAAAGAACGTCTGAATAAGGTCATCCGTTCCATTCATAAT 600
BSNT_04098___ 601 GAAAAAGAAGTGCTGGAGATTGAGAAAAAAATCGGCCAGCGCGTCAAACG 650
|||||||||||||||||||||||||||||||||||.||||||||||||||
RBAM_025260__ 601 GAAAAAGAAGTGCTGGAGATTGAGAAAAAAATCGGTCAGCGCGTCAAACG 650
BSNT_04098___ 651 TTCGATGGAGCGTACGCAGAAGGAATACTACTTGCGAGAACAAATGAAGG 700
|||||||||.||.||.||.|||||||||||||||||.|||||.|||||.|
RBAM_025260__ 651 TTCGATGGAACGCACTCAAAAGGAATACTACTTGCGTGAACAGATGAAAG 700
BSNT_04098___ 701 CGATTCAAAAAGAGCTTGGCGATAAAGAAGGCAAAACTGGCGAAGTTCAG 750
|.|||||.||.|||||||||||.||||||||.|||||.||||||||||||
RBAM_025260__ 701 CCATTCAGAAGGAGCTTGGCGACAAAGAAGGAAAAACCGGCGAAGTTCAG 750
BSNT_04098___ 751 ACGCTGACGGAAAAAATCGAAGAAGCAGGCATGCCTGATCATGTGAAGGA 800
.||||.||||||||.||.||||||||||||||||||||.|.|||.||.||
RBAM_025260__ 751 TCGCTCACGGAAAAGATAGAAGAAGCAGGCATGCCTGAGCGTGTCAAAGA 800
BSNT_04098___ 801 AACAGCGCTTAAAGAATTGAACAGATATGAAAAAATTCCGTCAAGTTCTG 850
|||.||||||||.|||||.|.|.|.||.||||||.|.||||||||.||.|
RBAM_025260__ 801 AACGGCGCTTAAGGAATTAAGCCGTTACGAAAAAGTGCCGTCAAGCTCAG 850
BSNT_04098___ 851 CGGAAAGCTCCGTGATCCGCAACTATATCGACTGGCTGGTTGCTCTTCCG 900
||||||||||.||.||||||||||||||.||||||||..|.||.||||||
RBAM_025260__ 851 CGGAAAGCTCTGTTATCCGCAACTATATTGACTGGCTCATCGCCCTTCCG 900
BSNT_04098___ 901 TGGACGGATGAAACAGATGATAAGCTTGATTTGAAAGAAGCAGG----AC 946
|||.|||||||||||||.|||||.||||||.|.|||.||||.|| |
RBAM_025260__ 901 TGGTCGGATGAAACAGAAGATAAACTTGATATTAAAAAAGCCGGGGAAA- 949
BSNT_04098___ 947 GTCTCTTGGACGAAGAGCACCACGGGCTAGAAAAAGTAAAAGAACGTATT 996
||||.||..|||||||||||||..||||.|||||.|||||.||.|||
RBAM_025260__ 950 ---TCTTAGATAAAGAGCACCACGGCTTAGAGAAAGTGAAAGAGCGGATT 996
BSNT_04098___ 997 TTAGAATATTTGGCTGTCCAGAAGCTGACCAAATCCCTGAAAGGCCCGAT 1046
||.||.||||||||.||..|..|||||||.|||.|.||||||||.|||||
RBAM_025260__ 997 TTGGAGTATTTGGCCGTGAAACAGCTGACGAAAACGCTGAAAGGGCCGAT 1046
BSNT_04098___ 1047 TCTCTGTTTGGCAGGACCTCCAGGTGTCGGAAAAACGTCTTTAGCCAAAT 1096
|||.|||.||||.||||||||.||.|||||.|||||.|||.|.||.||||
RBAM_025260__ 1047 TCTTTGTCTGGCCGGACCTCCGGGAGTCGGTAAAACATCTCTTGCAAAAT 1096
BSNT_04098___ 1097 CAATTGCA--AAAAGCTTGGGACGCAAATTCGTCAGAATCTCACTCGGAG 1144
|||| || |..|||.||||.|||...||.||.|||||.|||||.||.|
RBAM_025260__ 1097 CAAT--CAGTACGAGCATGGGGCGCCGTTTTGTGAGAATTTCACTGGGCG 1144
BSNT_04098___ 1145 GAGTACGGGACGAATCAGAGATACGCGGACACAGACGGACCTATGTCGGA 1194
||||.||.||.||.||.||.||.|||||.|||.|.||.||.||.||||||
RBAM_025260__ 1145 GAGTGCGCGATGAGTCTGAAATCCGCGGGCACCGGCGTACATACGTCGGA 1194
BSNT_04098___ 1195 GCAATGCCTGGACGTATTATTCAAGGGATGAAAAAAGCGGGCAAGCTGAA 1244
||.||||||||.||||||||.||.||||||||||||||.|||||.|..||
RBAM_025260__ 1195 GCGATGCCTGGCCGTATTATACAGGGGATGAAAAAAGCCGGCAAACAAAA 1244
BSNT_04098___ 1245 TCCGGTCTTCTTATTAGACGAAATTGACAAAATGTCATCTGATTTTAGAG 1294
||||||.||..|..|.||.||.||.||.||||||||.||||||||.||||
RBAM_025260__ 1245 TCCGGTTTTTCTCCTGGATGAGATCGATAAAATGTCGTCTGATTTCAGAG 1294
BSNT_04098___ 1295 GAGACCCATCATCCGCTATGCTTGAAGTGCTTGATCCAGAGCAAAACAGC 1344
|.||.||.||.||.||.||||||||.|||||.|||||.||.|||||||||
RBAM_025260__ 1295 GCGATCCGTCTTCAGCGATGCTTGAGGTGCTGGATCCGGAACAAAACAGC 1344
BSNT_04098___ 1345 AGCTTCAGTGATCACTATATTGAAGAAACCTTTGATTTATCCAAAGTGCT 1394
|..|||||.||.||||||||||||||.||.||.||||||||.||||||||
RBAM_025260__ 1345 ACATTCAGCGACCACTATATTGAAGAGACATTCGATTTATCGAAAGTGCT 1394
BSNT_04098___ 1395 GTTTATCGCAACGGCAAACAATTTGGCCACAATCCCGGGCCCGCTCAGAG 1444
|||||||||.||.||.||.||..|.||..|.||.|||||.||.|||||||
RBAM_025260__ 1395 GTTTATCGCGACTGCGAATAACCTTGCTTCCATACCGGGACCTCTCAGAG 1444
BSNT_04098___ 1445 ACAGAATGGAAATTATTAATATCGCAGGCTACACAGAAATAGAAAAACTT 1494
||||||||||.|||||.|...|..||||||||||.||||..|||||.||.
RBAM_025260__ 1445 ACAGAATGGAGATTATCAGCCTGTCAGGCTACACTGAAAACGAAAAGCTG 1494
BSNT_04098___ 1495 GAAATCGTAAAGGATCACTTGCTTCCAAAGCAAATCAAAGAACACGGGCT 1544
||.|||||.|||||.|||.|||||||.||.|||||||||||.||||||||
RBAM_025260__ 1495 GAGATCGTGAAGGACCACCTGCTTCCGAAACAAATCAAAGAGCACGGGCT 1544
BSNT_04098___ 1545 GAAGAAAAGCAACCTGCAGCTGCGTGATCAGGCGATTCTTGATATTATCC 1594
.|..||.||||||||||||.|.||.||||||||||||...||.||.||||
RBAM_025260__ 1545 CACAAAGAGCAACCTGCAGATTCGGGATCAGGCGATTACGGACATCATCC 1594
BSNT_04098___ 1595 GCTACTATACGAGAGAAGCTGGTGTGAGAAGCCTTGAACGCCAGCTTGCC 1644
|||||||.|||||.|||||.||.|||||||..||||||||||||.|||||
RBAM_025260__ 1595 GCTACTACACGAGGGAAGCCGGCGTGAGAACGCTTGAACGCCAGATTGCC 1644
BSNT_04098___ 1645 GCGATTTGCCGTAAAGCTGCAAAAGCCATTGTTGCTGAAGAGCGAAAACG 1694
||.||||||||.||.|||||||||||||||||..||||.|||.|||||||
RBAM_025260__ 1645 GCCATTTGCCGAAAGGCTGCAAAAGCCATTGTGTCTGAGGAGAGAAAACG 1694
BSNT_04098___ 1695 GATTACGGTTACTGAGAAGAACCTTCAAGACTTTATCGGAAAACGTATTT 1744
.|||||.|||||.|||||.||.||....||||.|.||||||||||.||.|
RBAM_025260__ 1695 CATTACCGTTACAGAGAAAAATCTGGCCGACTATCTCGGAAAACGGATAT 1744
BSNT_04098___ 1745 TCAGATATGGACAAGCTGAAACAGAGGATCAGGTTGGTGTAGTGACAGGG 1794
|||||||.|||||.||.|||||.||.|||||..|.||.||.||.||.|||
RBAM_025260__ 1745 TCAGATACGGACAGGCGGAAACCGAAGATCAAATCGGGGTTGTCACGGGG 1794
BSNT_04098___ 1795 CTTGCTTATACAACCGTTGGCGGAGATACGCTGTCGATTGAAGTATCGCT 1844
||.||.|||||.||.||.|||||||||||||||||.||.|||||.||..|
RBAM_025260__ 1795 CTCGCGTATACGACGGTCGGCGGAGATACGCTGTCAATCGAAGTGTCATT 1844
BSNT_04098___ 1845 TTCTCCGGGGAAAGGGAAATTAATCCTGACAGGAAAGCTCGGAGATGTTA 1894
.||.|||||.|||||.||..|.||.|||||.||.|||||.||||||||.|
RBAM_025260__ 1845 GTCACCGGGAAAAGGAAAGCTGATTCTGACCGGGAAGCTTGGAGATGTCA 1894
BSNT_04098___ 1895 TGAGAGAGTCAGCTCAGGCTGCATTCAGCTATGTGCGATCCAAAACAGAA 1944
||.|.||.|||||.|||||.||.|||||.|||||.||.||.|||.|.|||
RBAM_025260__ 1895 TGCGGGAATCAGCGCAGGCCGCTTTCAGTTATGTCCGCTCGAAAGCGGAA 1944
BSNT_04098___ 1945 GAACTTGGCATTGAACCTGACTTTCATGAGAAGTATGATATTCATATACA 1994
.|..|.||.||.||.||..|.||.||||||||||||||.||||||||.||
RBAM_025260__ 1945 CAGTTCGGAATCGATCCGAAATTCCATGAGAAGTATGACATTCATATCCA 1994
BSNT_04098___ 1995 TGTACCAGAGGGTGCGGTGCCAAAAGATGGTCCGTCAGCTGGTATTACGA 2044
|||.||.||.||.||||||||.|||||.||.||.||.||.||.|||||||
RBAM_025260__ 1995 TGTCCCTGAAGGAGCGGTGCCGAAAGACGGCCCTTCTGCCGGAATTACGA 2044
BSNT_04098___ 2045 TGGCAACAGCGCTTGTTTCTGCTTTAACGGGACGGGCGGTTTCGCGTGAA 2094
||||.||.|||||.|||||.||.|||||||..||.|||||....||.|||
RBAM_025260__ 2045 TGGCCACGGCGCTCGTTTCAGCATTAACGGACCGTGCGGTAAAACGCGAA 2094
BSNT_04098___ 2095 GTCGGCATGACTGGGGAAATCACGCTTCGCGGGCGCGTGCTGCCGATCGG 2144
|||||.|||||.||.|||||||||||.||.||.||||||||.||||||||
RBAM_025260__ 2095 GTCGGTATGACGGGAGAAATCACGCTGCGGGGCCGCGTGCTTCCGATCGG 2144
BSNT_04098___ 2145 CGG-CTTAAAGGAAAAAGCGCTTGGCGCACATAGAGCGGGATTAACGACC 2193
||| ||.||| |||||.|||||.|||||.||.||||||||..|.||.||.
RBAM_025260__ 2145 CGGACTGAAA-GAAAAGGCGCTCGGCGCGCACAGAGCGGGCCTGACCACT 2193
BSNT_04098___ 2194 ATTATTGCGCCTAAAGATAATGAAAAAGATATAGAGGATATTCCGGAAAG 2243
||||||||||||||||||||.|||||||||||||||||||||||.|||||
RBAM_025260__ 2194 ATTATTGCGCCTAAAGATAACGAAAAAGATATAGAGGATATTCCAGAAAG 2243
BSNT_04098___ 2244 CGTCAGGGAGGGGCTGACATTTATATTGGCGTCCCACTTAGACGAGGTTT 2293
||||||.||.||.||||..||||||||.|..||.|||.|.||.||.||||
RBAM_025260__ 2244 CGTCAGAGAAGGACTGAAGTTTATATTCGTTTCTCACCTGGATGACGTTT 2293
BSNT_04098___ 2294 TGGAACATGCCTTAGTAGGAGAGAAGAAATGA 2325
||||||||||||||||||||||||||||||||
RBAM_025260__ 2294 TGGAACATGCCTTAGTAGGAGAGAAGAAATGA 2325
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