Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04094 and RBAM_025230

See Amino acid alignment / Visit BSNT_04094 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_04094___hemA.1.9828.seq
#    -bsequence dna-align/RBAM_025230___hemA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04094___hemA-RBAM_025230___hemA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04094___hemA-RBAM_025230___hemA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04094___hemA
# 2: RBAM_025230___hemA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1385
# Identity:    1102/1385 (79.6%)
# Similarity:  1102/1385 (79.6%)
# Gaps:          25/1385 ( 1.8%)
# Score: 4365.5
# 
#
#=======================================

BSNT_04094___      1 ---------ATGCATATACTTGTTGTGGGAGTAGATTATAAATCCGCCCC     41
                              ||||||||.||||||||||||||||||||||||||||||||
RBAM_025230__      1 ATGAAAGCGATGCATATTCTTGTTGTGGGAGTAGATTATAAATCCGCCCC     50

BSNT_04094___     42 TATTGAGATACGTGAAAAAGTAAGTTTTCAGCCGAATGAGCTGGCGGAAG     91
                     ||||||.|||||.||||||.||||||||||||||.|||||||.||.||||
RBAM_025230__     51 TATTGAAATACGCGAAAAAATAAGTTTTCAGCCGGATGAGCTTGCAGAAG    100

BSNT_04094___     92 CAATGGTGCAGCTGAAAGAAGAGAAAAGCATTCTTGAAAACATCATTGTC    141
                     |.|||.|.|...|.||||.|||.|||||..|||||||||||||.||.||.
RBAM_025230__    101 CGATGCTCCGTTTAAAAGGAGAAAAAAGTGTTCTTGAAAACATTATCGTG    150

BSNT_04094___    142 TCAACCTGCAACCGCACTGAAATTTATGCGGTAGTCGACCAGCTCCATAC    191
                     |||||||||||||||||.|||||.||||||||.|||||||||||.|||||
RBAM_025230__    151 TCAACCTGCAACCGCACCGAAATATATGCGGTGGTCGACCAGCTTCATAC    200

BSNT_04094___    192 CGGCCGTTATTATATAAAAAAGTTTTTAGCTGATTGGTT-TCAATTAAGC    240
                     ||||||||||||||||||.|..||||||.|.||.||||| ||..|   ||
RBAM_025230__    201 CGGCCGTTATTATATAAAGACATTTTTATCCGAATGGTTCTCGCT---GC    247

BSNT_04094___    241 --AAAGAAGAGCTGTCACCG-TTCTTAACGTTTTATGAGAGCGATGCCGC    287
                       ||||||||||||||.||| ||||.|| .||||||||||||||.||.||
RBAM_025230__    248 CGAAAGAAGAGCTGTCTCCGTTTCTGAA-ATTTTATGAGAGCGACGCGGC    296

BSNT_04094___    288 TGTTGAGCATTTATTCCGTGTAGCCTGCGGACTT-GACTCTATGGTGATT    336
                     ..|.|||||||||||||||||.||.||||| ||| ||.||.|||||.||.
RBAM_025230__    297 GATCGAGCATTTATTCCGTGTGGCGTGCGG-CTTGGATTCCATGGTCATC    345

BSNT_04094___    337 GGCGAAACGCAGATTCTCGGACAGGTACGCGACAGCTTTAAAACAGCTCA    386
                     ||.||||||||.||.|||||.|||||.|||...|||||||||||.||.||
RBAM_025230__    346 GGAGAAACGCAAATACTCGGCCAGGTCCGCTCAAGCTTTAAAACGGCGCA    395

BSNT_04094___    387 GCAAGAAAAAACGATCGGGACTATTTTTAATGAGCTGTTTAAGCAGGCGG    436
                     |..||||||.||||||||.||.|||||.||||||||||||||.|||||||
RBAM_025230__    396 GGCAGAAAAGACGATCGGCACCATTTTCAATGAGCTGTTTAAACAGGCGG    445

BSNT_04094___    437 TTACAGTGGGCAAACGGACTCACGCAGAAACAGACATTGGCTCAAATGCG    486
                     |.||.||.||||||||.||.||.||.|||||.||.||.|||.|.|||||.
RBAM_025230__    446 TGACCGTCGGCAAACGCACGCATGCCGAAACCGATATCGGCGCCAATGCC    495

BSNT_04094___    487 GTGTCAGTAAGCTATGCTGCAGTTGAACTTGCCAAAAAAATCTTCGGAAA    536
                     ||.||.||.||.||.||.||.||||||||.||.||||||||||||||  .
RBAM_025230__    496 GTTTCCGTCAGTTACGCCGCCGTTGAACTCGCGAAAAAAATCTTCGG--C    543

BSNT_04094___    537 TC--TTTCAAGCAAGCACATATTGATTCTCGGTGCGGGAAAAATGGGCGA    584
                     ||  |.||||..||||||||.|||||||||||||||||||||||||||||
RBAM_025230__    544 TCATTGTCAAATAAGCACATTTTGATTCTCGGTGCGGGAAAAATGGGCGA    593

BSNT_04094___    585 GCTTGCTGCGGAAAACCTGCACGGACAGGGAATCGGCAAGGTCACTGTCA    634
                     |||.||.||.||||||||||||||.|||||.||||||||.||.||.||||
RBAM_025230__    594 GCTCGCCGCAGAAAACCTGCACGGTCAGGGCATCGGCAAAGTAACGGTCA    643

BSNT_04094___    635 TTAACCGAACGTACTTGAAAGCGAAGGAGCTTGCAGACCGTTTCTCAGGT    684
                     |.|||.||||||..|||||.||.||.|.||||||.|||||||||||.||.
RBAM_025230__    644 TCAACAGAACGTTTTTGAAGGCAAAAGCGCTTGCTGACCGTTTCTCCGGA    693

BSNT_04094___    685 GAAGCGAGAAGCTTGAATCAGCTTGAAAGCGCGCTTGCGGAGGCTGATAT    734
                     ||||||.|.|||||.||.|||||||||...||.|||||.||.||||||||
RBAM_025230__    694 GAAGCGCGCAGCTTAAACCAGCTTGAACATGCACTTGCTGAAGCTGATAT    743

BSNT_04094___    735 TTTAATCAGTTCAACCGGTGCAAGTGAATTTGTCGTGTCCAAAGAGATGA    784
                     ||||||||||||.||.||.||||||||.||.||||||||.|||||.||||
RBAM_025230__    744 TTTAATCAGTTCGACAGGCGCAAGTGATTTCGTCGTGTCTAAAGAAATGA    793

BSNT_04094___    785 TGGAAAACGCGAATAAGCTTCGCAAGGGACGTCCGCTGTTTATGGTCGAC    834
                     ||||.|..|||...|..|..||.||.||.||.|||.|.||||||||.||.
RBAM_025230__    794 TGGAGAGAGCGGGCAGACAGCGGAAAGGCCGCCCGTTATTTATGGTGGAT    843

BSNT_04094___    835 ATTGCCGTGCCTAGAGATCTTGATCCGGCGCTGAATGATCTTGAAGGTGT    884
                     ||.||.|||||.||.||.||.||||||||||||||.||||||||||||||
RBAM_025230__    844 ATCGCTGTGCCGAGGGACCTCGATCCGGCGCTGAACGATCTTGAAGGTGT    893

BSNT_04094___    885 TTTTCTTTATGATATCGACGATCTGGAAGGCATTGTAGAAGCGAACATGA    934
                     ||||||.||.|||||.||.||.||.|||||.||.||.|||||.|||.|..
RBAM_025230__    894 TTTTCTGTACGATATTGATGACCTTGAAGGAATCGTTGAAGCCAACTTAC    943

BSNT_04094___    935 AAGAGCGGAGAGAAACAGCTGAAAAAGTTGAACTGTTAATTGAAGAAACC    984
                     ||||.||..|.|||||.|||||||||||.||.|||||.|||||||...|.
RBAM_025230__    944 AAGAACGCCGTGAAACCGCTGAAAAAGTCGAGCTGTTTATTGAAGCGGCA    993

BSNT_04094___    985 ATTGTGGAATTTAAACAATGGATGAATACACTTGGTGTTGTGCCGGTTAT   1034
                     |||||.||.|||||.||.|||.|.|||||.||.||.||.||||||||.||
RBAM_025230__    994 ATTGTTGAGTTTAAGCAGTGGCTTAATACGCTCGGCGTCGTGCCGGTCAT   1043

BSNT_04094___   1035 TTCTGCATTGCGCGAAAAGGCGCTTGCCATCCAGTCAGAAACGATGGACA   1084
                     |||.||..||||.|||||||||||..||||||||||.||.||||||.|.|
RBAM_025230__   1044 TTCGGCGCTGCGTGAAAAGGCGCTGTCCATCCAGTCCGATACGATGCAGA   1093

BSNT_04094___   1085 GCATTGAGCGTAAGCTGCCTCA-CTTAAGCACAAGAGAGAAAAAACTGTT   1133
                     ||||||||||.||||||||||| ||.|.| ..|||||||||||||||..|
RBAM_025230__   1094 GCATTGAGCGCAAGCTGCCTCATCTGACG-GTAAGAGAGAAAAAACTTCT   1142

BSNT_04094___   1134 GAACAAACACACCAAAAGTATTATTAACCAAATGCTTCGTGATCCGATTT   1183
                     .|.||||||.||.|||||.||.||||||||||||||.||.||.||||||.
RBAM_025230__   1143 CAGCAAACATACGAAAAGCATCATTAACCAAATGCTGCGCGACCCGATTC   1192

BSNT_04094___   1184 TAAAGGTGAAAGAGCTTGCGGCAGATGCTGATTCTGAAGAAAAGCTCGCG   1233
                     |.||.|.|||||||||||||||.||.||.|||||.|||||||||||...|
RBAM_025230__   1193 TGAAAGCGAAAGAGCTTGCGGCTGAAGCGGATTCGGAAGAAAAGCTGAAG   1242

BSNT_04094___   1234 TTGTTTATGCAGATTTTTGATATTGAAGAAGCTGCGGGCCGTCAAATGAT   1283
                     .||||||||||.||.||.||||||||.||||..||.|||||.||..||..
RBAM_025230__   1243 CTGTTTATGCAAATATTCGATATTGAGGAAGAGGCCGGCCGCCAGCTGGA   1292

BSNT_04094___   1284 GAAAACCGTTGAAAGCAGCCAGAAGGTCCACTCTTTTAAGAAGGCTGAAT   1333
                     .||||.|.|.||.|.|.||||||.|||.||.||.|||.|.|||||.|||.
RBAM_025230__   1293 CAAAAGCCTGGATAACCGCCAGACGGTTCATTCGTTTCAAAAGGCAGAAG   1342

BSNT_04094___   1334 CAAAAGCGGGCTTTAGCCCACTTGTAAGTGAGTGA   1368
                     |||||.|||||||..|.||.|||||||||||||||
RBAM_025230__   1343 CAAAAACGGGCTTACGTCCGCTTGTAAGTGAGTGA   1377


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