Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04088 and RBAM_025190

See Amino acid alignment / Visit BSNT_04088 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_04088___hemB.1.9828.seq
#    -bsequence dna-align/RBAM_025190___hemB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04088___hemB-RBAM_025190___hemB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04088___hemB-RBAM_025190___hemB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04088___hemB
# 2: RBAM_025190___hemB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 983
# Identity:     784/983 (79.8%)
# Similarity:   784/983 (79.8%)
# Gaps:          13/983 ( 1.3%)
# Score: 3133.0
# 
#
#=======================================

BSNT_04088___      1 ---ATGAGTCAATCATTTAATAGACACCGCCGCCTGCGGTCATCAAAA--     45
                        ||||.||||.|||||||.|||||||||||..||||..|    .||  
RBAM_025190__      1 ATGATGAATCAAACATTTAACAGACACCGCCGTTTGCGCGC----GAACG     46

BSNT_04088___     46 --GCAATGAGAGAAATGGTAAAGGAAACACGTTTGCATCCATCAGATTTT     93
                       ||.||||||||..|.|||||.|||||||||.|.||.||.|||||||||
RBAM_025190__     47 CTGCGATGAGAGATTTAGTAAAAGAAACACGTCTTCACCCCTCAGATTTT     96

BSNT_04088___     94 ATTTATCCGATTTTTGTCGTTGAAGGGCTGGAAGGCAAAAAAGCTGTTCC    143
                     |||||.|||.|.||||||||||||||.||.|||||.|||||||..|||||
RBAM_025190__     97 ATTTACCCGTTATTTGTCGTTGAAGGACTCGAAGGAAAAAAAGAAGTTCC    146

BSNT_04088___    144 GTCAATGCCTGATGTTTACCATGTATCATTAGATTTATTGAAGGATGAAG    193
                     .||.|||||.|..|||||.|||||||||.|.|||||.||.|||||||||.
RBAM_025190__    147 TTCCATGCCGGGGGTTTATCATGTATCACTCGATTTGTTAAAGGATGAAA    196

BSNT_04088___    194 TAGCGGAGCTGGTCAAACTGGGCATTCAATCTGTTATCGTGTTCGGCATC    243
                     |.||.||||||.|....||.||||||.|.||.||.|||||.||||||.|.
RBAM_025190__    197 TGGCTGAGCTGATATCGCTCGGCATTAAGTCGGTCATCGTTTTCGGCGTG    246

BSNT_04088___    244 CCGGAAGAAAAAGATGATTGCGGAACACAAGCGTACCATGATCACGGAAT    293
                     ||||||||||||||.|..||||||||.||.||.|..||.||||||||.||
RBAM_025190__    247 CCGGAAGAAAAAGACGCCTGCGGAACCCAGGCTTTTCACGATCACGGCAT    296

BSNT_04088___    294 TGTCCAAAAAGCCATCACAGAAATTAAAGAACACTTCCCTGAAATGGTTG    343
                     |||.||.||||..||..|.|||||||||.|.||.|..|||||||||.|.|
RBAM_025190__    297 TGTGCAGAAAGGGATTGCTGAAATTAAAAAGCATTATCCTGAAATGATCG    346

BSNT_04088___    344 TTGTCGCTGACACGTGCCTGTGCGAATATACAGACCACGGCCATTGCGGA    393
                     |..|||||||.|||||.||.||.|||||.||.||.||||||||||||||.
RBAM_025190__    347 TCATCGCTGATACGTGTCTCTGTGAATACACGGATCACGGCCATTGCGGG    396

BSNT_04088___    394 CTTGTCAAAGACGGGGTCATCCTCAATGATGAATCGCTGGAGCTTTTGGC    443
                     .|.||.||||||||.|..|||||||||||.||.|||||.||.||..||||
RBAM_025190__    397 GTCGTGAAAGACGGAGAAATCCTCAATGACGAGTCGCTTGAACTGCTGGC    446

BSNT_04088___    444 GCAGACAGCTGTCAGCCAAGCGAAAGCAGGTGCGGATATCATTGCGCCAT    493
                     |||||||||.||||||||.||.|||||.||.||.||.|||||.||.||.|
RBAM_025190__    447 GCAGACAGCCGTCAGCCAGGCCAAAGCCGGCGCTGACATCATCGCTCCTT    496

BSNT_04088___    494 CAAACATGATGGACGGATTTGTTACAGTGATCAGAGAAGCACTTGATAAA    543
                     ||||.|||||||||||.|||||.|||||||||||.|||||.||.||||||
RBAM_025190__    497 CAAATATGATGGACGGTTTTGTCACAGTGATCAGGGAAGCGCTCGATAAA    546

BSNT_04088___    544 GAAGGATTCGTCAATATTCCCATCATGTCTTACGCTGTTAAATATTCAAG    593
                     |||||||||...||||||||.|||||||||||.||.||.|||||||||||
RBAM_025190__    547 GAAGGATTCACGAATATTCCGATCATGTCTTATGCCGTGAAATATTCAAG    596

BSNT_04088___    594 TGAGTTTTACGGTCCGTTCCGTGATGCAGCAAACAGCACACCGCAATTCG    643
                     |||.|||||||||||||||||.||.||.||..|||||||.|||||.||||
RBAM_025190__    597 TGAATTTTACGGTCCGTTCCGCGACGCGGCTGACAGCACGCCGCAGTTCG    646

BSNT_04088___    644 GAGACCGCAAAACATATCAGATGGACCCTGCCAACCGTATGGAGGCACTC    693
                     |||||||.|||||||||||||||||.||.||||||||..||||.||.|||
RBAM_025190__    647 GAGACCGAAAAACATATCAGATGGATCCGGCCAACCGCTTGGAAGCGCTC    696

BSNT_04088___    694 CGCGAAGCACAATCAGATGTCGAAGAAGGCGCAGACTTTTTGATTGTCAA    743
                     ||.||.||..|||||||.|..|.|||||||||.||||||||.||.|||||
RBAM_025190__    697 CGTGAGGCTGAATCAGACGCGGCAGAAGGCGCTGACTTTTTAATCGTCAA    746

BSNT_04088___    744 ACCTTCGCTTTCTTATATGGATATCATGCGTGACGT-AAAAAATGAGTTT    792
                     |||.||..|.||.||..|.|||||.||||||||.|| |||||..|...|.
RBAM_025190__    747 ACCGTCTATGTCATACTTAGATATTATGCGTGATGTGAAAAACCGCCATC    796

BSNT_04088___    793 ACTTTGCCGCTCGTCGCTTATAATGTAAGCGGAGAGTATTCAATGGTGAA    842
                     || .|||||||.|||||.||||||||.|||||.||||||||.||||||||
RBAM_025190__    797 AC-CTGCCGCTGGTCGCATATAATGTGAGCGGGGAGTATTCCATGGTGAA    845

BSNT_04088___    843 GGCTGCAGCGCAGAACGGCTGGATCAAAGAAAAAGAAATTGTGTTGGAAA    892
                     .||.|||||.||.|||||||||||.||||||||||||||.|||.||||||
RBAM_025190__    846 AGCGGCAGCCCAAAACGGCTGGATTAAAGAAAAAGAAATGGTGCTGGAAA    895

BSNT_04088___    893 TTTTGACAAGCATGAAGCGCGCGGGTGCCGACCTGATTATTACGTATCAT    942
                     ||||.||.||||||||.||.||.||.|||||.||||||||.|||||||||
RBAM_025190__    896 TTTTAACGAGCATGAAACGTGCAGGAGCCGATCTGATTATGACGTATCAT    945

BSNT_04088___    943 GCGAAAGACGCAGCGAAATGGCTTGCGGAGTAA    975
                     ||.|||||||||||.|||||||||||.||||||
RBAM_025190__    946 GCAAAAGACGCAGCAAAATGGCTTGCTGAGTAA    978


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04088 and RBAM_025190

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
