Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04087 and RBAM_025180

See Amino acid alignment / Visit BSNT_04087 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:27
# Commandline: needle
#    -asequence dna-align/BSNT_04087___hemL.1.9828.seq
#    -bsequence dna-align/RBAM_025180___hemL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04087___hemL-RBAM_025180___hemL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04087___hemL-RBAM_025180___hemL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04087___hemL
# 2: RBAM_025180___hemL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1297
# Identity:    1041/1297 (80.3%)
# Similarity:  1041/1297 (80.3%)
# Gaps:          11/1297 ( 0.8%)
# Score: 4164.0
# 
#
#=======================================

BSNT_04087___      1 ATGAGAAGCTATGAAAAATCAAAAACGGCTTTTAAAGAAGCGCAAAAACT     50
                     ||||||||||||||||||||||||.|.|||||||||||||||||.|||||
RBAM_025180__      1 ATGAGAAGCTATGAAAAATCAAAAGCCGCTTTTAAAGAAGCGCAGAAACT     50

BSNT_04087___     51 CATGCCGGGCGGTGTGAACAGTCCCGTTCGCGCATTTAAATCGGTAGACA    100
                     .|||||||||||.||||||||.||.||.|||||.||||||||.||.||.|
RBAM_025180__     51 GATGCCGGGCGGAGTGAACAGCCCAGTGCGCGCGTTTAAATCAGTCGATA    100

BSNT_04087___    101 TGGACCCGATTTTTATGGAGCGCGGAAAAGGCTCGAAAATCTTTGATATT    150
                     ||||||||||.||||||.|||||||||||||.||||||||.|||||||||
RBAM_025180__    101 TGGACCCGATCTTTATGCAGCGCGGAAAAGGATCGAAAATTTTTGATATT    150

BSNT_04087___    151 GACGGGAATGAATATATTGACTACGTCTTGTCATGGGGGCCTTTAATTTT    200
                     |||||.|||||||||||.|||||||||.||...||||||||..|.|||||
RBAM_025180__    151 GACGGCAATGAATATATCGACTACGTCCTGAGCTGGGGGCCGCTCATTTT    200

BSNT_04087___    201 AGGGCATACAAATGACCGCGTCGTAGAAAGCCTCAAAAAAGTGGCTGAAT    250
                     .||.||.||.||.|||||.|||||.||||||||.||||||||.||.||..
RBAM_025180__    201 GGGCCACACGAACGACCGGGTCGTTGAAAGCCTGAAAAAAGTAGCCGAGA    250

BSNT_04087___    251 ACGGGACAAGCTTTGGTGCTCCGACTGAAGTAGAAAATGAACTGGCTAAG    300
                     ||||||||||.||.||.||..|.||||||||.|||||.||||||||.||.
RBAM_025180__    251 ACGGGACAAGTTTCGGGGCATCTACTGAAGTGGAAAACGAACTGGCCAAA    300

BSNT_04087___    301 CTCGTCATTGATCGTGTGCCATCTGTAGAAATTGTACGAATGGTAAGCTC    350
                     .|.||||||||.||||||||.|||||.|||||.||.||.|||||.|||||
RBAM_025180__    301 TTGGTCATTGACCGTGTGCCGTCTGTTGAAATCGTGCGGATGGTCAGCTC    350

BSNT_04087___    351 CGGAACAGAGGCTACAATGAGTGCCCTCCGTTTGGCAAGGGGCTATACGG    400
                     |||.||||||||.||||||||.|||||.|||.|||||||.||.|||||.|
RBAM_025180__    351 CGGCACAGAGGCGACAATGAGCGCCCTGCGTCTGGCAAGAGGATATACCG    400

BSNT_04087___    401 GCCGCAACAAGATTTTAAAATTTGAGGGCTGCTACCACGGACACGGCGAT    450
                     ||||.|||||.|||||.|||||.||.|||||.||||||||.||.||.|||
RBAM_025180__    401 GCCGAAACAAAATTTTGAAATTCGAAGGCTGTTACCACGGCCATGGTGAT    450

BSNT_04087___    451 TCTCTCTTGATTAAAGCTGGTTCAGGTGTTGCCACTCTCGGTCTGCCTGA    500
                     ||.||..||||.|||||.||.||.||.||.||.||.|||||.||.||.||
RBAM_025180__    451 TCACTGCTGATCAAAGCGGGATCCGGAGTGGCGACACTCGGCCTTCCGGA    500

BSNT_04087___    501 CAGCCCGGGGGTGCCTGAAGGCATTGCGAAAAACACCATCACCGTTCCGT    550
                     |||||||||.|||||.|||||.||.||.|..||.||.||.||||||||.|
RBAM_025180__    501 CAGCCCGGGCGTGCCGGAAGGAATAGCAATGAATACGATTACCGTTCCAT    550

BSNT_04087___    551 ACAATGATTTAGAAAGTGTAAAGCTTGCTTTCCAGCAATTCGGTGAAGAC    600
                     ||||.||.||.|||||.||....||.||.||||.|.|.|.|||||||||.
RBAM_025180__    551 ACAACGACTTGGAAAGCGTTGCACTCGCATTCCGGGAGTACGGTGAAGAT    600

BSNT_04087___    601 ATTGCGGGAGTCATTGTAGAGCCAGTTGCCGGAAATATGGGTGTTGTTCC    650
                     |||||.||.||||||||.||.||.||.||.||.||||||||.||||||||
RBAM_025180__    601 ATTGCCGGGGTCATTGTTGAACCGGTAGCAGGCAATATGGGCGTTGTTCC    650

BSNT_04087___    651 GCCGCAAGAAGGCTTCCTGCAGGGTCTGCGTGATATCACTGAGCAGTACG    700
                     ||||||.||||||||..|.||.||.||.||.||.||.||.||.|||||.|
RBAM_025180__    651 GCCGCAGGAAGGCTTTTTACAAGGACTTCGCGACATGACGGAACAGTATG    700

BSNT_04087___    701 GCTCCCTGCTGATTTTTGATGAGGTGATGACAGGCTTCCGGGTCGATTAT    750
                     ||.|.|||||.||||||||||||||.|||||.||.||.||.||.||||||
RBAM_025180__    701 GCGCGCTGCTCATTTTTGATGAGGTCATGACCGGTTTTCGCGTGGATTAT    750

BSNT_04087___    751 AACTGCGCTCAAGGTTACTTCGGCGTAACGCCTGATCTGACTTGTTTAGG    800
                     |||||.||.|||||.||.||||||||.||||||||..|.||.|||.|.||
RBAM_025180__    751 AACTGTGCGCAAGGGTATTTCGGCGTGACGCCTGACTTAACGTGTCTCGG    800

BSNT_04087___    801 AAAAGTAATCGGGGGCGGACTTCCTGTCGGCGCTTATGGCGGAAAGGCAG    850
                     .|||||.|||||.|||||.|||||||||||.||.|||||||||||.||.|
RBAM_025180__    801 CAAAGTCATCGGCGGCGGTCTTCCTGTCGGTGCGTATGGCGGAAAAGCTG    850

BSNT_04087___    851 AAATCATGGAGCAGATCGCTCCAAGCGGTCCGATCTATCAAGCTGGTACA    900
                     |.||.|||||.|..|||||.||.|||||||||||||||||.|||||.|||
RBAM_025180__    851 ACATTATGGAACGAATCGCGCCGAGCGGTCCGATCTATCAGGCTGGAACA    900

BSNT_04087___    901 TTGTCAGGCAACCCGCTTGCGATGACGGCTGG-CTTAGAGACATTGAAAC    949
                     ||||||||.||.||||||||.|||||.||.|| ||| |||||.||..|.|
RBAM_025180__    901 TTGTCAGGAAATCCGCTTGCCATGACAGCGGGACTT-GAGACGTTACAGC    949

BSNT_04087___    950 AGCTGACACCTGAATCCTA-CAAGAATTTCATCAAAAAAGGCGACAGGCT    998
                     ||||.|||||||||||.|| ||||||||| .|.|||||||||||.|.|||
RBAM_025180__    950 AGCTCACACCTGAATCTTACCAAGAATTT-GTGAAAAAAGGCGATATGCT    998

BSNT_04087___    999 GGAAGAAGGAATTTCAAAAGCCGCCGAGGCTCATGGTATTCCGCATACCT   1048
                     .||||||||.|||||||||||.||.|..||.|||||.||||||||.||.|
RBAM_025180__    999 TGAAGAAGGCATTTCAAAAGCAGCTGCAGCACATGGCATTCCGCACACGT   1048

BSNT_04087___   1049 TTAACCGTGCAGGTTCGATGATCGGTTTCTTCTTTACTAACGAACCAGTC   1098
                     |||||||.||.|||||.||||||||.|||||.||.||.||.||.||.|||
RBAM_025180__   1049 TTAACCGGGCGGGTTCAATGATCGGCTTCTTTTTCACAAATGAGCCTGTC   1098

BSNT_04087___   1099 ATTAATTATGGAACAGCGAAATCATCTGATTTGAAGCTGTTCGCAAGCTA   1148
                     |||||.||||.|.||||.||||||||||||||.|||||||||||.|..||
RBAM_025180__   1099 ATTAACTATGAAGCAGCCAAATCATCTGATTTAAAGCTGTTCGCTAAATA   1148

BSNT_04087___   1149 TTATAAAGGGATGGCAAATGAAGGGGTATTCCTTCCGCCATCACAATTCG   1198
                     |||||||||||||||..|.|.|||.|||||.||.|||||.||.|||||.|
RBAM_025180__   1149 TTATAAAGGGATGGCTGACGCAGGCGTATTTCTGCCGCCGTCTCAATTTG   1198

BSNT_04087___   1199 AAGGTCTTTTCCTCTCAACGGCCCATAC--TGATGAAGATATTGAAAACA   1246
                     ||||..|.||.|||||.||.||.|||||  ||  ||.|||||||||||.|
RBAM_025180__   1199 AAGGATTGTTTCTCTCCACTGCGCATACAATG--GAGGATATTGAAAATA   1246

BSNT_04087___   1247 CAATCCAGGCAGCTGAGAAAGTATTTGCTGAGATCAGCCGCAGATAA   1293
                     |.||.||.||.|||||||||||.||....|.||||||||||.||   
RBAM_025180__   1247 CCATTCAAGCCGCTGAGAAAGTGTTCCAGGCGATCAGCCGCTGA---   1290


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