Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04084 and RBAM_025160

See Amino acid alignment / Visit BSNT_04084 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:26
# Commandline: needle
#    -asequence dna-align/BSNT_04084___ysxE.1.9828.seq
#    -bsequence dna-align/RBAM_025160___ysxE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04084___ysxE-RBAM_025160___ysxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04084___ysxE-RBAM_025160___ysxE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04084___ysxE
# 2: RBAM_025160___ysxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1054
# Identity:     769/1054 (73.0%)
# Similarity:   769/1054 (73.0%)
# Gaps:          59/1054 ( 5.6%)
# Score: 2674.0
# 
#
#=======================================

BSNT_04084___      1 ATGGAAGATACCCAATCGGTTCTTCAGGAATACGGACTGACTGCTCAATT     50
                     |||||||....||||||.||.||||||||||||||.|||.|.|||.|.|.
RBAM_025160__      1 ATGGAAGCAGTCCAATCAGTGCTTCAGGAATACGGGCTGGCGGCTGAGTA     50

BSNT_04084___     51 TATTGAGCCTGTCAGTCCTCTTGTTTGGAAAGTGTATACAGACTACGGCA    100
                     |||||||||||||||.||.|.|||||||||.||.||..||.|||||||||
RBAM_025160__     51 TATTGAGCCTGTCAGCCCGCATGTTTGGAAGGTCTACTCAAACTACGGCA    100

BSNT_04084___    101 TATTTGCCCTGAAAAAATTGAAAGAAGG-TCGCGGCAAGCATTTTACAGA    149
                     |.|||||..|||||.|..| .|||..|| .|||.|||...|.|||||.||
RBAM_025160__    101 TTTTTGCTTTGAAACAGCT-CAAGCCGGCCCGCAGCAGTGAATTTACGGA    149

BSNT_04084___    150 TCATATGGTGGCGATTGAGGAAAAAGGCTTTCGTTCATTCGTTCCCGTTT    199
                     ||.||||.|.|.|||||||||.|||||.|..||.|||||.||.||..|.|
RBAM_025160__    150 TCTTATGATTGAGATTGAGGAGAAAGGGTACCGATCATTTGTGCCGATCT    199

BSNT_04084___    200 ACAGAACAAATAGCGGTGAGTTTTTCTCAGCAGGCATACAATACGGAG-A    248
                     .|.|.||..||..|||.||.|||||   .||.||.|.|| |.|||||| |
RBAM_025160__    200 GCCGCACGTATGCCGGCGATTTTTT---TGCGGGAAGAC-AGACGGAGAA    245

BSNT_04084___    249 TACCTACTATTTAATGCCTTGGCTCCAATTTGACCAAGAGGAAGAACGGG    298
                     |.|.||.|||||||||||||||||.||.|..||.||.||.||.|||||||
RBAM_025160__    246 TTCTTATTATTTAATGCCTTGGCTTCAGTACGATCAGGAAGAGGAACGGG    295

BSNT_04084___    299 ATCAGAAACATGCTTATTTATTTAGAGA-------AACAGCCCGTCTTCA    341
                     ||||.|||||||.|||..|.||||.|||       ||...||..|||.| 
RBAM_025160__    296 ATCAAAAACATGTTTACCTTTTTAAAGAGGTCGCGAAGCTCCATTCTGC-    344

BSNT_04084___    342 CGAGAGAACCGCGCAGG--AACTAAA---GGTTAGACGTGATGAGAT-TG    385
                           .||.|.||.||  |.|.|||   |    ||| |||  |||| |.
RBAM_025160__    345 ------GACTGTGCGGGACATCCAAATCCG----GAC-TGA--AGATATC    381

BSNT_04084___    386 AACG----TTATTACGGGCAAACGAAAAAAAAGTGGGAACAAGATAAAAT    431
                     |.||    ||||.|.|   .||||||||.|.|.||||||.|.|||||..|
RBAM_025160__    382 AGCGGCTTTTATGAAG---CAACGAAAAGAGATTGGGAAAATGATAAGCT    428

BSNT_04084___    432 TTTCTATGAGCAGTTTGTGGATAGAGCGGAGAAGGAGTGGTACCTTTCTC    481
                     |.|||||||.||.||.|..||..|.|||||.||.||||||||.|||||.|
RBAM_025160__    429 TGTCTATGAACAATTCGCCGACCGGGCGGAAAAAGAGTGGTATCTTTCAC    478

BSNT_04084___    482 CTTTTGAACTCCAGGCCATAACCTATTTTTCAGAAACCATTTCCGCGGTG    531
                     ||||||||||.|||||..|.||.|||.||.|||||||..|||||||.||.
RBAM_025160__    479 CTTTTGAACTGCAGGCTGTTACGTATCTTACAGAAACGGTTTCCGCCGTC    528

BSNT_04084___    532 AATTTTGCGCTGGAACGGTTGGAGGACTGGTATGAGTCTGCAAAGGA---    578
                     |||||.||.||||||||..||||.||.||||.|||..|.||||||||   
RBAM_025160__    529 AATTTCGCTCTGGAACGTCTGGAAGAATGGTTTGACGCGGCAAAGGATCA    578

BSNT_04084___    579 --AAAAGACGTTTCAAGGGTTGTAATGAACCACGGCAGCCTGTCTATACA    626
                       |.||||||     ||.|..||.||.||||||||||||.|.||.|..|.
RBAM_025160__    579 TGACAAGACG-----AGAGCGGTGATCAACCACGGCAGCTTATCGAGCCG    623

BSNT_04084___    627 CCATTTTCTGTATAATGATGCCGGGA-CCGGATATTTTACAAACTTCGAA    675
                     |||.|||||||||||||||| ||||| |.||.|.|||.||.||.|||||.
RBAM_025160__    624 CCACTTTCTGTATAATGATG-CGGGATCGGGCTTTTTCACGAATTTCGAG    672

BSNT_04084___    676 AGAGCATCTGTCGGTCCGCCGCAAAACGACCTGCTCGGCTTTTATACAAA    725
                     |.|||..|..|.||.||.||||||||||||||||||||||||||..|.|.
RBAM_025160__    673 AAAGCTGCGCTGGGCCCTCCGCAAAACGACCTGCTCGGCTTTTACTCCAG    722

BSNT_04084___    726 AATGTTCAGAGGCTTTCCGAAAGCTTGTCCGGAATGCGTCGAATGGTTTT    775
                     ||||||||||.|||.|||||||||.||.||||||||..|.||.|||||||
RBAM_025160__    723 AATGTTCAGAAGCTATCCGAAAGCATGCCCGGAATGTCTGGACTGGTTTT    772

BSNT_04084___    776 ATGGATAT-ACGAAATCATTCCCTTTGCGTGAAGCGGAAGTCAGCCTTTT    824
                     ||...||| || |||||||||||..|.||||||||||||.|||||||.||
RBAM_025160__    773 ATACGTATCAC-AAATCATTCCCGCTCCGTGAAGCGGAAATCAGCCTGTT    821

BSNT_04084___    825 TCTCAGCTATATGGCATATCCGGCAGCCATGTACAAGGTGCTG-AACGGT    873
                     |||||||||||||||.||||||.|.|||||||||||.|||||| ||||| 
RBAM_025160__    822 TCTCAGCTATATGGCTTATCCGTCCGCCATGTACAAAGTGCTGAAACGG-    870

BSNT_04084___    874 TATCAAACTGGGAAAAGACAGC-ATGAAAAAGAGGAATGTACACAATTAT    922
                     |||||.||.||..|||| ..|| .|||||||||.||.||.||.|||||||
RBAM_025160__    871 TATCAGACCGGCCAAAG-GGGCTCTGAAAAAGAAGAGTGCACGCAATTAT    919

BSNT_04084___    923 TAAAGGCTTATTGGCAAATGAAAAATATAGAGCCGTTTGTGATGAAAATC    972
                     |||..||.|.||||||.|||||||||.|.|||||.|||.|.|||||..|.
RBAM_025160__    920 TAAGAGCGTTTTGGCAGATGAAAAATGTTGAGCCTTTTCTCATGAAGGTT    969

BSNT_04084___    973 CATCAGATTGAACAAGAGAAAAAATTTCAGGCTGAAAACGAGTCCACGTC   1022
                     |||||||||||.|..|||||||||.|..|.||.||||||||||||.|.||
RBAM_025160__    970 CATCAGATTGAGCGGGAGAAAAAAATAAAAGCGGAAAACGAGTCCTCTTC   1019

BSNT_04084___   1023 TTAA   1026
                     .|||
RBAM_025160__   1020 ATAA   1023


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