Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04084 and RBAM_025160
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:26
# Commandline: needle
# -asequence dna-align/BSNT_04084___ysxE.1.9828.seq
# -bsequence dna-align/RBAM_025160___ysxE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04084___ysxE-RBAM_025160___ysxE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04084___ysxE-RBAM_025160___ysxE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04084___ysxE
# 2: RBAM_025160___ysxE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1054
# Identity: 769/1054 (73.0%)
# Similarity: 769/1054 (73.0%)
# Gaps: 59/1054 ( 5.6%)
# Score: 2674.0
#
#
#=======================================
BSNT_04084___ 1 ATGGAAGATACCCAATCGGTTCTTCAGGAATACGGACTGACTGCTCAATT 50
|||||||....||||||.||.||||||||||||||.|||.|.|||.|.|.
RBAM_025160__ 1 ATGGAAGCAGTCCAATCAGTGCTTCAGGAATACGGGCTGGCGGCTGAGTA 50
BSNT_04084___ 51 TATTGAGCCTGTCAGTCCTCTTGTTTGGAAAGTGTATACAGACTACGGCA 100
|||||||||||||||.||.|.|||||||||.||.||..||.|||||||||
RBAM_025160__ 51 TATTGAGCCTGTCAGCCCGCATGTTTGGAAGGTCTACTCAAACTACGGCA 100
BSNT_04084___ 101 TATTTGCCCTGAAAAAATTGAAAGAAGG-TCGCGGCAAGCATTTTACAGA 149
|.|||||..|||||.|..| .|||..|| .|||.|||...|.|||||.||
RBAM_025160__ 101 TTTTTGCTTTGAAACAGCT-CAAGCCGGCCCGCAGCAGTGAATTTACGGA 149
BSNT_04084___ 150 TCATATGGTGGCGATTGAGGAAAAAGGCTTTCGTTCATTCGTTCCCGTTT 199
||.||||.|.|.|||||||||.|||||.|..||.|||||.||.||..|.|
RBAM_025160__ 150 TCTTATGATTGAGATTGAGGAGAAAGGGTACCGATCATTTGTGCCGATCT 199
BSNT_04084___ 200 ACAGAACAAATAGCGGTGAGTTTTTCTCAGCAGGCATACAATACGGAG-A 248
.|.|.||..||..|||.||.||||| .||.||.|.|| |.|||||| |
RBAM_025160__ 200 GCCGCACGTATGCCGGCGATTTTTT---TGCGGGAAGAC-AGACGGAGAA 245
BSNT_04084___ 249 TACCTACTATTTAATGCCTTGGCTCCAATTTGACCAAGAGGAAGAACGGG 298
|.|.||.|||||||||||||||||.||.|..||.||.||.||.|||||||
RBAM_025160__ 246 TTCTTATTATTTAATGCCTTGGCTTCAGTACGATCAGGAAGAGGAACGGG 295
BSNT_04084___ 299 ATCAGAAACATGCTTATTTATTTAGAGA-------AACAGCCCGTCTTCA 341
||||.|||||||.|||..|.||||.||| ||...||..|||.|
RBAM_025160__ 296 ATCAAAAACATGTTTACCTTTTTAAAGAGGTCGCGAAGCTCCATTCTGC- 344
BSNT_04084___ 342 CGAGAGAACCGCGCAGG--AACTAAA---GGTTAGACGTGATGAGAT-TG 385
.||.|.||.|| |.|.||| | ||| ||| |||| |.
RBAM_025160__ 345 ------GACTGTGCGGGACATCCAAATCCG----GAC-TGA--AGATATC 381
BSNT_04084___ 386 AACG----TTATTACGGGCAAACGAAAAAAAAGTGGGAACAAGATAAAAT 431
|.|| ||||.|.| .||||||||.|.|.||||||.|.|||||..|
RBAM_025160__ 382 AGCGGCTTTTATGAAG---CAACGAAAAGAGATTGGGAAAATGATAAGCT 428
BSNT_04084___ 432 TTTCTATGAGCAGTTTGTGGATAGAGCGGAGAAGGAGTGGTACCTTTCTC 481
|.|||||||.||.||.|..||..|.|||||.||.||||||||.|||||.|
RBAM_025160__ 429 TGTCTATGAACAATTCGCCGACCGGGCGGAAAAAGAGTGGTATCTTTCAC 478
BSNT_04084___ 482 CTTTTGAACTCCAGGCCATAACCTATTTTTCAGAAACCATTTCCGCGGTG 531
||||||||||.|||||..|.||.|||.||.|||||||..|||||||.||.
RBAM_025160__ 479 CTTTTGAACTGCAGGCTGTTACGTATCTTACAGAAACGGTTTCCGCCGTC 528
BSNT_04084___ 532 AATTTTGCGCTGGAACGGTTGGAGGACTGGTATGAGTCTGCAAAGGA--- 578
|||||.||.||||||||..||||.||.||||.|||..|.||||||||
RBAM_025160__ 529 AATTTCGCTCTGGAACGTCTGGAAGAATGGTTTGACGCGGCAAAGGATCA 578
BSNT_04084___ 579 --AAAAGACGTTTCAAGGGTTGTAATGAACCACGGCAGCCTGTCTATACA 626
|.|||||| ||.|..||.||.||||||||||||.|.||.|..|.
RBAM_025160__ 579 TGACAAGACG-----AGAGCGGTGATCAACCACGGCAGCTTATCGAGCCG 623
BSNT_04084___ 627 CCATTTTCTGTATAATGATGCCGGGA-CCGGATATTTTACAAACTTCGAA 675
|||.|||||||||||||||| ||||| |.||.|.|||.||.||.|||||.
RBAM_025160__ 624 CCACTTTCTGTATAATGATG-CGGGATCGGGCTTTTTCACGAATTTCGAG 672
BSNT_04084___ 676 AGAGCATCTGTCGGTCCGCCGCAAAACGACCTGCTCGGCTTTTATACAAA 725
|.|||..|..|.||.||.||||||||||||||||||||||||||..|.|.
RBAM_025160__ 673 AAAGCTGCGCTGGGCCCTCCGCAAAACGACCTGCTCGGCTTTTACTCCAG 722
BSNT_04084___ 726 AATGTTCAGAGGCTTTCCGAAAGCTTGTCCGGAATGCGTCGAATGGTTTT 775
||||||||||.|||.|||||||||.||.||||||||..|.||.|||||||
RBAM_025160__ 723 AATGTTCAGAAGCTATCCGAAAGCATGCCCGGAATGTCTGGACTGGTTTT 772
BSNT_04084___ 776 ATGGATAT-ACGAAATCATTCCCTTTGCGTGAAGCGGAAGTCAGCCTTTT 824
||...||| || |||||||||||..|.||||||||||||.|||||||.||
RBAM_025160__ 773 ATACGTATCAC-AAATCATTCCCGCTCCGTGAAGCGGAAATCAGCCTGTT 821
BSNT_04084___ 825 TCTCAGCTATATGGCATATCCGGCAGCCATGTACAAGGTGCTG-AACGGT 873
|||||||||||||||.||||||.|.|||||||||||.|||||| |||||
RBAM_025160__ 822 TCTCAGCTATATGGCTTATCCGTCCGCCATGTACAAAGTGCTGAAACGG- 870
BSNT_04084___ 874 TATCAAACTGGGAAAAGACAGC-ATGAAAAAGAGGAATGTACACAATTAT 922
|||||.||.||..|||| ..|| .|||||||||.||.||.||.|||||||
RBAM_025160__ 871 TATCAGACCGGCCAAAG-GGGCTCTGAAAAAGAAGAGTGCACGCAATTAT 919
BSNT_04084___ 923 TAAAGGCTTATTGGCAAATGAAAAATATAGAGCCGTTTGTGATGAAAATC 972
|||..||.|.||||||.|||||||||.|.|||||.|||.|.|||||..|.
RBAM_025160__ 920 TAAGAGCGTTTTGGCAGATGAAAAATGTTGAGCCTTTTCTCATGAAGGTT 969
BSNT_04084___ 973 CATCAGATTGAACAAGAGAAAAAATTTCAGGCTGAAAACGAGTCCACGTC 1022
|||||||||||.|..|||||||||.|..|.||.||||||||||||.|.||
RBAM_025160__ 970 CATCAGATTGAGCGGGAGAAAAAAATAAAAGCGGAAAACGAGTCCTCTTC 1019
BSNT_04084___ 1023 TTAA 1026
.|||
RBAM_025160__ 1020 ATAA 1023
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