Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04071 and RBAM_025100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:25
# Commandline: needle
# -asequence dna-align/BSNT_04071___maf.1.9828.seq
# -bsequence dna-align/RBAM_025100___maf.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04071___maf-RBAM_025100___maf.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04071___maf-RBAM_025100___maf.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04071___maf
# 2: RBAM_025100___maf
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 602
# Identity: 454/602 (75.4%)
# Similarity: 454/602 (75.4%)
# Gaps: 64/602 (10.6%)
# Score: 1750.0
#
#
#=======================================
BSNT_04071___ 1 ATGACAAAACCGTTAATACTTGCATCACAATCTCCGCGCAGGAAAGAACT 50
||||||||||..||||||||.|||||||||||||||||.||.||||||||
RBAM_025100__ 1 ATGACAAAACGCTTAATACTCGCATCACAATCTCCGCGAAGAAAAGAACT 50
BSNT_04071___ 51 CCTCGATCTTCTCCAGCTGCCCTACTCCATTATTGTCAGTGAAG-----T 95
|||..|||||||.|||.|.||.|||..|||||||| .||| .
RBAM_025100__ 51 CCTTAATCTTCTTCAGATTCCTTACAGCATTATTG-----CAAGCCGCAC 95
BSNT_04071___ 96 AGAAGAAAAATTAAATCGAAACTTTTCACCAGAAGAAAACGTCCAATGGT 145
||||||||||||||||||||||.||||.||.|||||||||||||||||.|
RBAM_025100__ 96 AGAAGAAAAATTAAATCGAAACCTTTCGCCGGAAGAAAACGTCCAATGTT 145
BSNT_04071___ 146 TGGCAAAACAAAAAGCTAAGGCTGTA---GCTGATCTCCA---CCCGCAT 189
||||..|.||||||||....|||||| ||.|| | |||| ||
RBAM_025100__ 146 TGGCCGAGCAAAAAGCCGGTGCTGTATTGGCCGA-----AAATCCCG-AT 189
BSNT_04071___ 190 GCAATCGTTATCGGTGCTGATACAATGGTATGCCTTGACGGCGAATGCCT 239
|||.||||||||||.|||||.||.|||||.|||.|.||||||||||||||
RBAM_025100__ 190 GCAGTCGTTATCGGGGCTGACACGATGGTGTGCATAGACGGCGAATGCCT 239
BSNT_04071___ 240 TGGCAAACCGCAGGATCA-AGAAGAAGCTGCTTCTATGCTGCGGAGGCTT 288
.|||||||||||.|| || |||||||||.||....|||||||||||||||
RBAM_025100__ 240 CGGCAAACCGCATGA-CAGAGAAGAAGCGGCACACATGCTGCGGAGGCTT 288
BSNT_04071___ 289 TCAGGCCGAAGTCACTC-AGTAATAACCGCGGTCAGCATTCA-------- 329
||.||||||||.|| || |||.||.||.||||||||||||||
RBAM_025100__ 289 TCCGGCCGAAGCCA-TCAAGTCATTACGGCGGTCAGCATTCAGACGCATG 337
BSNT_04071___ 330 AGCTGAAAATCACAGCGAGACTTTTTATGATAAGACAGAAGTTGTGTTTT 379
|.|.|||| ||.||.||.|.|||.|.|||.|||||...|||||
RBAM_025100__ 338 ACCGGAAA--------GAAACGTTCTGTGACACGACGGAAGTGACGTTTT 379
BSNT_04071___ 380 GGTCCCTCAGTGAAGAAGAGATTTGGAC----GTATATTGAAACAAAAGA 425
||.|.|||||||||||.||.|| || .||.||||||||||||||
RBAM_025100__ 380 GGCCGCTCAGTGAAGACGACAT----ACAGCTCTACATTGAAACAAAAGA 425
BSNT_04071___ 426 GCCGATGGATAAAGCAGGTGCATACGGCATCCAAGGAAGAGGCGCGCTTT 475
.|||||||||||||||||||||||||||||||||||||.|||||||||||
RBAM_025100__ 426 ACCGATGGATAAAGCAGGTGCATACGGCATCCAAGGAAAAGGCGCGCTTT 475
BSNT_04071___ 476 TTGTAAAGAAAATAGACGGAGATTATTATTCAGTCATGGGCCTTCCTATA 525
|.||.||.|||||||||||.||||.||||||.|||.|.||.||||||.|.
RBAM_025100__ 476 TAGTGAAAAAAATAGACGGTGATTTTTATTCTGTCGTCGGGCTTCCTGTC 525
BSNT_04071___ 526 TCAAAAACAATGAGAGTTCTTCGCC-------ACTTTGATATAAGGGCAT 568
.|.|||||||||||| ||| |.|||.||||||..||.|
RBAM_025100__ 526 GCTAAAACAATGAGA-------GCCTTGAAAGAATTTAATATAAAAGCTT 568
BSNT_04071___ 569 GA 570
||
RBAM_025100__ 569 GA 570
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