Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04065 and RBAM_025060

See Amino acid alignment / Visit BSNT_04065 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:25
# Commandline: needle
#    -asequence dna-align/BSNT_04065___mreD.1.9828.seq
#    -bsequence dna-align/RBAM_025060___mreD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04065___mreD-RBAM_025060___mreD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04065___mreD-RBAM_025060___mreD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04065___mreD
# 2: RBAM_025060___mreD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 520
# Identity:     396/520 (76.2%)
# Similarity:   396/520 (76.2%)
# Gaps:           2/520 ( 0.4%)
# Score: 1472.0
# 
#
#=======================================

BSNT_04065___      1 GTGAAACGTTTCCTTCTCCCTTTCGTTATGATGCTTGTTTTTTCTGCGGA     50
                     |||||||||||||||||||||||..|||||||..|.||.||||.||||||
RBAM_025060__      1 GTGAAACGTTTCCTTCTCCCTTTGATTATGATTTTGGTCTTTTGTGCGGA     50

BSNT_04065___     51 AAGCATTTTTACAGATTTGGTGCATTTTCCTTTCGTTACAGATGACCAAG    100
                     ||||||.|.|||.|||.||||||.|||||||||||||.|.|..||.||..
RBAM_025060__     51 AAGCATCTATACCGATCTGGTGCGTTTTCCTTTCGTTTCCGTCGAGCAGC    100

BSNT_04065___    101 TGCTCGCCCCGCGTTTTTTGATGCTTGTATTGATATTCATGTCGGCTTTT    150
                     .|.|||..||||.||||.|..||||||...||||.||.|||||.||||.|
RBAM_025060__    101 AGGTCGTTCCGCATTTTCTTTTGCTTGCGCTGATTTTTATGTCCGCTTAT    150

BSNT_04065___    151 ATCAACCAAAAACACGCGATGATTTACGGATTTATTTTTGGTTTTCTATA    200
                     |||||||||||.||.|||.||||.|||||.||.|||||.||.|||||.||
RBAM_025060__    151 ATCAACCAAAAGCATGCGGTGATCTACGGTTTGATTTTCGGATTTCTTTA    200

BSNT_04065___    201 TGACATGAACTATACAAGTCTATTAGGCGTTTACATGTTTGGTTTTGCAG    250
                     ||||||.||.|||||..||.|.|||||||||||.||||||||||||||.|
RBAM_025060__    201 TGACATCAATTATACGGGTGTTTTAGGCGTTTATATGTTTGGTTTTGCCG    250

BSNT_04065___    251 GGCTATGCTATTTGGCTTCAAAAGCGTTTAAAGTGTTACATACAAACGCA    300
                     |..||||||||.||||..|.|||||||||||||||.|.||.||||||||.
RBAM_025060__    251 GTTTATGCTATCTGGCGGCCAAAGCGTTTAAAGTGCTGCAGACAAACGCC    300

BSNT_04065___    301 TTTGTAGTGATATTGATAGCAGTTCTG-GCTGTCTGTCTGCTCGAATTTT    349
                     .|..|.||.||..||.|.||.||.||| || ||.|||.||||.|||||||
RBAM_025060__    301 CTGATGGTCATTCTGGTTGCGGTGCTGAGC-GTATGTGTGCTTGAATTTT    349

BSNT_04065___    350 ACGTATTCGGCATTCAGTCTTTGATTCATAAAGACATTATGACGTTTAAC    399
                     ||||.|.||||||.|||.|.||.||.|..|..|.||..|||||.||||||
RBAM_025060__    350 ACGTCTACGGCATCCAGACGTTAATCCGCAGCGGCACAATGACATTTAAC    399

BSNT_04065___    400 GGATTTGTGCTTGACCGGTTTATACCGACAATTTTATTAAATATTGCAGC    449
                     |..|||||..||.|..||||..|.|||||...|||..|.||||||||.|.
RBAM_025060__    400 GATTTTGTCATTCAGAGGTTCTTGCCGACCGCTTTGCTGAATATTGCGGG    449

BSNT_04065___    450 AGCTCTTATTCTTGTTCTGCCATTTAGATTGTTTTTTATGAGTCTAAAGA    499
                     |||..||||..|.||.|||||.||.||..||||||.|||.|||||.||||
RBAM_025060__    450 AGCCGTTATATTAGTCCTGCCCTTCAGGCTGTTTTATATAAGTCTGAAGA    499

BSNT_04065___    500 AAGAATTGAGAGATGAGTAA    519
                     |||||||.||||||||||||
RBAM_025060__    500 AAGAATTAAGAGATGAGTAA    519


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