Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04061 and RBAM_025020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_04061___spoIVFB.1.9828.seq
# -bsequence dna-align/RBAM_025020___spoIVFB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04061___spoIVFB-RBAM_025020___spoIVFB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04061___spoIVFB-RBAM_025020___spoIVFB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04061___spoIVFB
# 2: RBAM_025020___spoIVFB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 901
# Identity: 639/901 (70.9%)
# Similarity: 639/901 (70.9%)
# Gaps: 68/901 ( 7.5%)
# Score: 2223.5
#
#
#=======================================
BSNT_04061___ 1 TTGAATAAATGGCTCGACCTTATCTTAAAGATCCATGTGCATCCTTTTCT 50
.||||||||||||||..|||..|.||.||.||.|||||.|||||||||||
RBAM_025020__ 1 ATGAATAAATGGCTCATCCTCCTTTTTAAAATTCATGTCCATCCTTTTCT 50
BSNT_04061___ 51 TTGGATTATCGCGGCGCTGGGCTTGCTC-----ACAGGCCATATGAAAGC 95
||||||||||..| |||||||.|| ||.||.||.||.|||||
RBAM_025020__ 51 TTGGATTATCATG-----GGGCTTGGTCTTATGACGGGGCACATCAAAGC 95
BSNT_04061___ 96 ATTATTTTGTCTGCTCCTGATTGTATTGATTCATGAGCTGGGGCATGCTG 145
..|..|.|||||..|.|||.|.||||...|||||||||||||||||||||
RBAM_025020__ 96 GCTGCTGTGTCTTTTGCTGGTCGTATCCGTTCATGAGCTGGGGCATGCTG 145
BSNT_04061___ 146 CTCTGGCTGTGTTTTTTTCTTGGAGAATCAAGCGTGTTTTTTTGCTGCCG 195
|||||||||||||||||||.|||.|.||.||.||..|.|||.||||.||.
RBAM_025020__ 146 CTCTGGCTGTGTTTTTTTCGTGGCGCATTAAACGAATCTTTCTGCTCCCT 195
BSNT_04061___ 196 TTTGGGGGAACGGTCGAAGTGGAAGAGCACGGGAATCGGCCG-TTAAAGG 244
||.||.||.|||||.||.|||||.||||||||.||.|||||| ||||| |
RBAM_025020__ 196 TTCGGCGGGACGGTTGAGGTGGAGGAGCACGGAAACCGGCCGCTTAAA-G 244
BSNT_04061___ 245 AAGAGTTTGCGGTCATTATTGCCGGCCCTCTTCAGCACATCTGGCTTCAG 294
|.||.||.|||||||||.|.||.|||||.||||||||..|.|||||||||
RBAM_025020__ 245 AGGAATTCGCGGTCATTCTGGCGGGCCCGCTTCAGCATGTGTGGCTTCAG 294
BSNT_04061___ 295 TTTGCCGCCTGG---------ATG------CTTGCAGAAGTCTCAGTGAT 329
...||.|||||| ||| .||||| ||||
RBAM_025020__ 295 GCGGCAGCCTGGCTCTTTTTCATGTCAGGCTTTGCA--------AGTG-- 334
BSNT_04061___ 330 TCATCAGCATACCTTTGAACTCTTCACCTTTTATAATCTTTCTA-TCTTA 378
||||.||.|||||..|.||.||||||||||||||.||.| ||||
RBAM_025020__ 335 -----AGCAGACATTTGAGATGTTTACCTTTTATAATCTCTCCATTCTT- 378
BSNT_04061___ 379 TTTGTCAATTTACTGCCGATCTGGCCGCTGGATGGAGGAAAACTGTTATT 428
||..|||||.|..||||||||||||||||.||.||.|||||..|..|.||
RBAM_025020__ 379 TTCATCAATCTTTTGCCGATCTGGCCGCTTGACGGCGGAAAGTTCGTGTT 428
BSNT_04061___ 429 TTTGTTGTTTTCCAAACAGCTGCCTTTTCAAAAGGCTCACCGGCTTAATC 478
|||.|..||.||.|||||..||.||||||||||.||.||.|..||.|..|
RBAM_025020__ 429 TTTATACTTCTCTAAACAAATGGCTTTTCAAAAAGCGCATCTCCTCAGCC 478
BSNT_04061___ 479 TAAAAACGTC-GCTCTGCTTCTGC-CTGTTGCTCGGGTGCTGGGTTTTAT 526
|..|.||.|| | |.|.|||.|| ||.||||||.|.||||||.||.|..
RBAM_025020__ 479 TGCAGACATCAG--CCGTTTCCGCGCTTTTGCTCTGCTGCTGGATTGTGC 526
BSNT_04061___ 527 TCGTGATTCCTCTGCAGATCAGCGCATGGGTTTTGTTTGTCTTTCTGGCT 576
|.|...|.||.||.|||.|||||||||||||..||||.||||||||.||.
RBAM_025020__ 527 TGGCCGTCCCCCTTCAGGTCAGCGCATGGGTGCTGTTCGTCTTTCTCGCC 576
BSNT_04061___ 577 GTTTCCTTGTTTGAGGAATATCGGCAAAGGCACTATATCCATGTGAGATT 626
|.|||.||.|..||.|||||.|||.|..||||.|||||.||..||||.||
RBAM_025020__ 577 GCTTCTTTATGGGATGAATACCGGAAGCGGCATTATATTCAGCTGAGGTT 626
BSNT_04061___ 627 TCTCCTCGAAAGGTATTACGGAAAAAACAGGGAGCTTGAGAAACTTC--- 673
|||..|.||.||.||.|||||.||||||.|.|| || ||
RBAM_025020__ 627 TCTTTTGGAGAGATACTACGGCAAAAACCGCGA---TG-------TCGCC 666
BSNT_04061___ 674 -TGCCGC------TGACAGTAAAGGCGGAGGATAAAGTCTATCATGTGAT 716
|||.|| ||||.||...|||.||.|..|||||..|.|||||.||
RBAM_025020__ 667 ATGCTGCATCCTTTGACGGTCGCGGCCGATGCCAAAGTAAAGCATGTCAT 716
BSNT_04061___ 717 GGCCGAGTTCAAACGTGGCTGTAAGCATCCGATTATTATAGAAAAATCAG 766
||||||.||||||||.||.||.|||||.||.|||||..|.||||||.|.|
RBAM_025020__ 717 GGCCGAATTCAAACGGGGATGCAAGCACCCCATTATCGTTGAAAAAGCCG 766
BSNT_04061___ 767 GCCAAAAGCTCAGCCAGCTTGACGAGAATGAAGTGCTGCACGCTTACTTT 816
||.||||||||||||||||.||.||.|||||||||||.||.||.||.|||
RBAM_025020__ 767 GCGAAAAGCTCAGCCAGCTCGATGAAAATGAAGTGCTTCATGCGTATTTT 816
BSNT_04061___ 817 GCCGATAAGCGGACGAATTCTTCCATGGAGGAGCTGCTTCTGCCCTACTA 866
||||||||.|||||..||||.||.|||||.||.|||||.|||||.|||||
RBAM_025020__ 817 GCCGATAAACGGACAGATTCCTCTATGGAAGACCTGCTGCTGCCTTACTA 866
BSNT_04061___ 867 A 867
.
RBAM_025020__ 867 G 867
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