Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04060 and RBAM_025010

See Amino acid alignment / Visit BSNT_04060 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_04060___rplU.1.9828.seq
#    -bsequence dna-align/RBAM_025010___rplU.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04060___rplU-RBAM_025010___rplU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04060___rplU-RBAM_025010___rplU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04060___rplU
# 2: RBAM_025010___rplU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     290/309 (93.9%)
# Similarity:   290/309 (93.9%)
# Gaps:           0/309 ( 0.0%)
# Score: 1374.0
# 
#
#=======================================

BSNT_04060___      1 ATGTACGCAATCATTAAAACAGGCGGTAAACAAATCAAAGTTGAAGAAGG     50
                     ||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_025010__      1 ATGTACGCAATCATTAAAACAGGCGGAAAACAAATCAAAGTTGAAGAAGG     50

BSNT_04060___     51 CCAAACTGTTTACATCGAAAAACTTGCTGCTGAAGCAGGTGAAACAGTTA    100
                     .|||||||||||||||||||||||||||||||||||||||||||||||.|
RBAM_025010__     51 TCAAACTGTTTACATCGAAAAACTTGCTGCTGAAGCAGGTGAAACAGTGA    100

BSNT_04060___    101 CTTTTGAAGACGTTTTGTTTGTTGGCGGAGACAACGTGAAAGTCGGCAAC    150
                     |.|||||||||||.|||||||||||||||||||.||||||||||||||||
RBAM_025010__    101 CGTTTGAAGACGTATTGTTTGTTGGCGGAGACAGCGTGAAAGTCGGCAAC    150

BSNT_04060___    151 CCTACAGTTGAAGGCGCAACAGTAACGGCTAAAGTTGAAAAACAAGGCCG    200
                     ||.|||||||.||||||.|||||.||.|||||||||||||||||||||||
RBAM_025010__    151 CCAACAGTTGCAGGCGCGACAGTTACAGCTAAAGTTGAAAAACAAGGCCG    200

BSNT_04060___    201 CGCGAAAAAAATCACTGTTTTCAGATACAAACCAAAGAAAAACGTTCATA    250
                     .|||||||||||||||||||||.|.|||||.|||||||||||.|||||||
RBAM_025010__    201 TGCGAAAAAAATCACTGTTTTCCGTTACAAGCCAAAGAAAAATGTTCATA    250

BSNT_04060___    251 AAAAACAAGGTCATCGTCAGCCTTACACTAAAGTGACGATCGAAAAAATC    300
                     |||||||||||||||||||||||||.||||||.||||.||||||||||||
RBAM_025010__    251 AAAAACAAGGTCATCGTCAGCCTTATACTAAATTGACAATCGAAAAAATC    300

BSNT_04060___    301 AACGCGTAA    309
                     |||||||||
RBAM_025010__    301 AACGCGTAA    309


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