Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04052 and RBAM_024950

See Amino acid alignment / Visit BSNT_04052 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:24
# Commandline: needle
#    -asequence dna-align/BSNT_04052___pheA.1.9828.seq
#    -bsequence dna-align/RBAM_024950___pheA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04052___pheA-RBAM_024950___pheA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04052___pheA-RBAM_024950___pheA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04052___pheA
# 2: RBAM_024950___pheA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity:     671/862 (77.8%)
# Similarity:   671/862 (77.8%)
# Gaps:           8/862 ( 0.9%)
# Score: 2562.0
# 
#
#=======================================

BSNT_04052___      1 ATGAAAGTCGGTTATTTAGGTCCAGCAGCTACATTTACACATCTAGCAGT     50
                     ||||||||||||||||||||.||||.|||.||||||||||||||||||||
RBAM_024950__      1 ATGAAAGTCGGTTATTTAGGGCCAGAAGCCACATTTACACATCTAGCAGT     50

BSNT_04052___     51 CAGTTCTTGTTTTCAAAACGGCGCCGA-ACATGTTGCTTACCGCACCATT     99
                     ||||||.||.|||||||||.||| .|| |||.|...||||.|..||.||.
RBAM_024950__     51 CAGTTCCTGCTTTCAAAACAGCG-TGACACAAGCACCTTATCAAACAATA     99

BSNT_04052___    100 CCGGAGTGTATAGATGCAGCCGTTGCAGGCGAAGTTGATTTTGCTTTTGT    149
                     ||||..||.||.|||||.||.|||||.||.|||||||||.||||.|||||
RBAM_024950__    100 CCGGCATGCATGGATGCGGCGGTTGCGGGAGAAGTTGATCTTGCATTTGT    149

BSNT_04052___    150 TCCTTTGGAAAATGCATTAGAAGGATCTGTTAATCTAACAATAGACTATT    199
                     ||||||||||||.||..|.|||||.||.|||||..||||.||.|||||||
RBAM_024950__    150 TCCTTTGGAAAACGCGCTGGAAGGCTCGGTTAACTTAACGATTGACTATT    199

BSNT_04052___    200 TAATACATGAACAGCC-CTTGCCAATCGTGGGTGAAATGACGTTGCCGAT    248
                     |.||.|||||.||||| |||| |.||||||||.|||||||||.|||||||
RBAM_024950__    200 TGATTCATGAGCAGCCTCTTG-CGATCGTGGGGGAAATGACGCTGCCGAT    248

BSNT_04052___    249 TCATCAGCACTTGCTCGTCCATCCCTCTAGAGAGAATGCATGGAAAGAGC    298
                     |||.|||||..|||||||.||.||.||.|||||.||||..||||||.|||
RBAM_024950__    249 TCACCAGCATCTGCTCGTTCACCCTTCGAGAGAAAATGAGTGGAAAAAGC    298

BSNT_04052___    299 TCGACAAAATTTACTCACATTCACACGCGATTGCGCAATGCCATAAATTT    348
                     |.||.||||||||.||.|||||.||.|||||||||||||||||.||||||
RBAM_024950__    299 TTGAGAAAATTTATTCTCATTCCCATGCGATTGCGCAATGCCACAAATTT    348

BSNT_04052___    349 CTTCATCGACATTTTCCTTCCGTTCCATATGAATACGCCAATTCTACCGG    398
                     |||||.||.||||||.|.||||||||.|||||.||.||.||.||.||.||
RBAM_024950__    349 CTTCACCGGCATTTTTCGTCCGTTCCTTATGAGTATGCGAAGTCAACAGG    398

BSNT_04052___    399 GGCGGCAGCAAAGTTTGTCAGTGACCATCCCGAGCTGAATATCGGGGTCA    448
                     .|||||.||.||||.|||||||||.|||.|.||.||....|||||.||.|
RBAM_024950__    399 TGCGGCTGCCAAGTATGTCAGTGAGCATTCGGACCTTCCGATCGGCGTGA    448

BSNT_04052___    449 TTGCCAATGATATGGCAGCTTCTACATACGAATTAAAAATCGTGAAACGG    498
                     ||||.|||||.|||||.||..|||||||||.|||.|..||||||||.|||
RBAM_024950__    449 TTGCAAATGAAATGGCCGCCGCTACATACGGATTGAGCATCGTGAAGCGG    498

BSNT_04052___    499 GATATACAGGATTATAGGGACAATCATACAAGATTTGTTATCCTGTCTCC    548
                     |||||.|||||||||..||||||.||.||.||||||||.||.||.||.||
RBAM_024950__    499 GATATTCAGGATTATCAGGACAACCACACGAGATTTGTCATTCTTTCGCC    548

BSNT_04052___    549 TGATGAAAACATATCTTTTGAAGTGAATTCAAAATTGAGTTCTAGGCCCA    598
                     |||..||.||.|.||.||.|||||||||.|.|||.||..|||..||||.|
RBAM_024950__    549 TGAAAAAGACGTCTCATTCGAAGTGAATGCGAAACTGTCTTCACGGCCGA    598

BSNT_04052___    599 AAACGACCTTAATGGTCATGCTGCCGCAGGATGATCAGTCCGGGGCGCTG    648
                     |||||||..|.|||||.|.|||.||.||.|||||.||.||.||.||||||
RBAM_024950__    599 AAACGACGATGATGGTAACGCTTCCCCAAGATGACCAATCAGGTGCGCTG    648

BSNT_04052___    649 CATAGAGTGCTGTCTGCATTTTCTTGGAGAAATTTAAACTTGTCAAAAAT    698
                     ||.||.||||||||.||.|||||.||||||||..|.||.||.|||||.||
RBAM_024950__    649 CACAGGGTGCTGTCCGCTTTTTCATGGAGAAACCTGAATTTATCAAAGAT    698

BSNT_04052___    699 TGAGTCACGTCCGACTAAAACCGGATTAGGCCATTATTTCTTTATTATTG    748
                     .||.||.||.|||||.|||||.||..|.|||.|.||||||||||||||||
RBAM_024950__    699 CGAATCGCGCCCGACAAAAACGGGTCTCGGCAACTATTTCTTTATTATTG    748

BSNT_04052___    749 ATATTGAGAAAGCGTTTGATGATGTATTGATTCCAGGGGCCATGCAGGAG    798
                     |||||||..|.|||.|.|||.|.||..|.|||||.||.|||.|.||.|||
RBAM_024950__    749 ATATTGAACAGGCGATGGATCAGGTTCTCATTCCCGGTGCCGTTCAAGAG    798

BSNT_04052___    799 CTTGAAGCACTCGGCTGCAAAGTGAGGCTTCTGGGTGCATACCAGTCTTA    848
                     .|.|||||.|||||||||...||.|.|||||||||..||||.||.||.||
RBAM_024950__    799 ATGGAAGCCCTCGGCTGCCGGGTCAAGCTTCTGGGAACATATCAATCCTA    848

BSNT_04052___    849 --CCAATTATAA    858
                       |.|  |||||
RBAM_024950__    849 TTCGA--TATAA    858


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