Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04051 and RBAM_024940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:24
# Commandline: needle
# -asequence dna-align/BSNT_04051___yrxA.1.9828.seq
# -bsequence dna-align/RBAM_024940___yrxA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04051___yrxA-RBAM_024940___yrxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04051___yrxA-RBAM_024940___yrxA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04051___yrxA
# 2: RBAM_024940___yrxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 550
# Identity: 406/550 (73.8%)
# Similarity: 406/550 (73.8%)
# Gaps: 14/550 ( 2.5%)
# Score: 1408.0
#
#
#=======================================
BSNT_04051___ 1 TTGACCGAAGAATTAAAGC-TAATGGGCGCCAACAGGCGTGACCAGCTTC 49
|||||.||||.|...|||| ||.|||| |..||.||.||.|||..|||.|
RBAM_024940__ 1 TTGACAGAAGGAACGAAGCTTACTGGG-GAGAAAAGACGCGACATGCTGC 49
BSNT_04051___ 50 TTCTGTGGCTGAAGGAATCTAAATCACCGCTGACAGGAGGAGAACTCGCA 99
|||..||||||||.|||.|....||.||..|.||||||||.|||.|.||.
RBAM_024940__ 50 TTCATTGGCTGAAAGAAGCCGGCTCGCCATTAACAGGAGGCGAATTGGCC 99
BSNT_04051___ 100 AAAAAAGCGAACGTCTCAAGACAGGTTATTGTACAGGATATATCGCTCTT 149
||||||||.||.||||||||||||||.||.||.|||||.||||||||.||
RBAM_024940__ 100 AAAAAAGCAAATGTCTCAAGACAGGTGATCGTGCAGGACATATCGCTTTT 149
BSNT_04051___ 150 GAAAGCGAAAAATGTACCGATTATCGCCACAAGCCAAGGATATGTATACA 199
||||||.|||||.|..|||||||||||.||.||||||||.||..||||||
RBAM_024940__ 150 GAAAGCAAAAAACGAGCCGATTATCGCGACGAGCCAAGGCTACTTATACA 199
BSNT_04051___ 200 T--GGATGCA-GCCGCTCAGCAGC-ACCAGCAGGCAGAAAGAATCATAGC 245
| |.|||.| |||| ||.|| |..|..|.||.|||.|.||..|.||
RBAM_024940__ 200 TCAGCATGAATGCCG----GCGGCGAAAAAAATGCCGAACGGATTGTCGC 245
BSNT_04051___ 246 ATGTCTGCACGGTCCTGAACGGACAGAAGAGGAAC-TGCAGCTCATCGTC 294
.|||||||||||.||.||.|||||.|||||.||.| |||| |||||.|||
RBAM_024940__ 246 CTGTCTGCACGGACCGGAGCGGACGGAAGAAGAGCTTGCA-CTCATTGTC 294
BSNT_04051___ 295 GACGAAGGCGTTACAGTAAAAGACGTAAAAATCGAGCATCCCGTATACGG 344
||.||||||||.||..||||.|||||.|.|||.||.||.|||||||||||
RBAM_024940__ 295 GATGAAGGCGTCACCATAAAGGACGTCATAATTGAACACCCCGTATACGG 344
BSNT_04051___ 345 AGATTTAACTGCAGCCATCCAAGTAGGCACCCGGAAAGAAGTTAGCCATT 394
.||||||||.||.|||||...|||..|.||.|||||||||||.|..||.|
RBAM_024940__ 345 CGATTTAACCGCCGCCATAAGAGTCAGTACACGGAAAGAAGTCAAACAAT 394
BSNT_04051___ 395 TCATCAAAAAAATCAATTCTACGAATGCTGCCTACTTATCACAGCTGACC 444
||||..|..|.||.||.||.||.|||||.||.|||.|.||||||||||||
RBAM_024940__ 395 TCATGGATCACATTAACTCGACAAATGCCGCTTACCTTTCACAGCTGACC 444
BSNT_04051___ 445 GACGGCGTGCACCTGCATACACTGACAGCACCTGA-TGAACATCGCATCG 493
|..|||||||||||.|||||..|.|..|| ||.|| ..||.|.||.||.|
RBAM_024940__ 445 GGAGGCGTGCACCTCCATACGTTAAGCGC-CCCGACAAAAGAGCGGATTG 493
BSNT_04051___ 494 ATCAAGCTTGCCAAGCCCTCGAAGAAGCCGGCATTTTAATTAAAGACTAA 543
|.|||||.||||||||.||.||.||.||.||.||||||||.|||||.|||
RBAM_024940__ 494 ACCAAGCCTGCCAAGCGCTGGACGACGCGGGTATTTTAATAAAAGATTAA 543
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