Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04048 and RBAM_024920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:23
# Commandline: needle
# -asequence dna-align/BSNT_04048___nadB.1.9828.seq
# -bsequence dna-align/RBAM_024920___nadB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04048___nadB-RBAM_024920___nadB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04048___nadB-RBAM_024920___nadB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04048___nadB
# 2: RBAM_024920___nadB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1719
# Identity: 1070/1719 (62.2%)
# Similarity: 1070/1719 (62.2%)
# Gaps: 276/1719 (16.1%)
# Score: 3107.0
#
#
#=======================================
BSNT_04048___ 1 ATGTCTAAAAAGACGATTGCAGTCATCGGTTCAGGGGCGGCGGCACTTTC 50
||||||.||||.||.|||...|||||.|||||.|||.|||||||.|||.|
RBAM_024920__ 1 ATGTCTGAAAAAACAATTATCGTCATTGGTTCGGGGACGGCGGCCCTTGC 50
BSNT_04048___ 51 CTTAGCTGCAGCTTTCCCGCCCTCATACGAAGTGACTGTTATCACAAAAA 100
||..|||.|..|.||.||.||.||||||.|||||||.||.|||||.||.|
RBAM_024920__ 51 CTGTGCTTCCTCATTTCCTCCGTCATACCAAGTGACCGTCATCACGAAGA 100
BSNT_04048___ 101 AAAGCGTCAAAAACAGCAATTCTGTCTATGCACAAGGCGGGATTGCTGCG 150
.||.|||.|..|||||||||||....|||||.||||||||||||||||..
RBAM_024920__ 101 GAAACGTAACGAACAGCAATTCGCATTATGCTCAAGGCGGGATTGCTGTT 150
BSNT_04048___ 151 GCCTATGCAAAAGATGACTCGATTGAAGCCCATCTGGAGGATACGTTATA 200
.|.||.|||||||||||||||||.|||.|||||.||.|.|||||..|.||
RBAM_024920__ 151 TCATACGCAAAAGATGACTCGATAGAATCCCATGTGAACGATACACTGTA 200
BSNT_04048___ 201 CGCAGGGTGCGGCCATAATAATCT---AGC---------TATTGC----- 233
.||.||||||||.||.|||.|..| ||| | ||||
RBAM_024920__ 201 TGCGGGGTGCGGACACAATGACGTGACAGCCGTGCGGCAT-TTGCTGAAA 249
BSNT_04048___ 234 AGCAGACGTATTACATGATGGAAAAATGATGGTTCAAAGCCTATTGGAGC 283
|||.||| |...|||||| |||.|.|.||.|..||.|||
RBAM_024920__ 250 AGCGGAC--AGAGCATGAT--AAACAGGCTGATAGAAGGCC--------- 286
BSNT_04048___ 284 GTGGATTTCC------ATTCGA--CCGCAATGAACGAGGCGGTGTTTGTC 325
|||||| ||.||| .||.|..||||| .||||||
RBAM_024920__ 287 ----ATTTCCCTTTTGATACGAAGTCGGACGGAACG-------TTTTGTC 325
BSNT_04048___ 326 TTGGAAGAGAAGGGGCCCACTCATACAACCGCATATTTCATGCTGGCGGA 375
|.||.||.|||||.||.||.||..|.|...|.||..|.||.||.||.|||
RBAM_024920__ 326 TCGGCAGGGAAGGCGCTCATTCCAAAAGGAGGATTCTGCACGCCGGGGGA 375
BSNT_04048___ 376 GACGCAACAGGCGGGCTGCTTATCGATTATTTGCTCAAACGGATCAACAG 425
||.||.||.||..||.|| ||| |.|.|.||.|| ||.|||.|||
RBAM_024920__ 376 GATGCGACCGGACGGATG-TTA--GTTGAGTTTCT-----GGTTCAGCAG 417
BSNT_04048___ 426 CAAA--------ATCAAGTTAATCGAGAATGAAATGGCAGCAGATTTGCT 467
|..| ||...|.|.||.||..|.||.|.||..|..|||.||||
RBAM_024920__ 418 CTGAGGGACGGCATACGGATCATTGAACACGAGACGGTTGTTGATCTGCT 467
BSNT_04048___ 468 TATAGAGGACGGACGAT------GTATCGGCGTCATGACAAAAGACAGCA 511
.||.||..||||||||| ||.|.|.|||
RBAM_024920__ 468 GATTGAACACGGACGATGCGCAGGTGTTGCCGT----------------- 500
BSNT_04048___ 512 AAGGGCGGCTCAAGGTAAGGCAC--------GCAGACGA--------AGT 545
||.||..||| |.||||.| .||||.|| .||
RBAM_024920__ 501 AAAGGATGCT-----TCAGGCGCTGTTTCTTACAGAAGAGCGGATTGTGT 545
BSNT_04048___ 546 TGTGCTGGCTGCCGGCGGCTGTGGAAACCTGTTTCTTCACCATACGAATG 595
.|||||.||..|.||||||||.||.|..||||..|...|.||.||.||||
RBAM_024920__ 546 AGTGCTTGCATCAGGCGGCTGCGGCAGTCTGTACCAATATCACACAAATG 595
BSNT_04048___ 596 ATCTCACTGTCACAGGTGACGGTCTTTCTCTGGCTTACCGGGCCGGGGCG 645
||..|.|..|.||.||.|||||..|..||||.||.|.|||.||.||.||.
RBAM_024920__ 596 ATTCCGCCATAACGGGAGACGGCATCGCTCTTGCCTTCCGCGCGGGAGCT 645
BSNT_04048___ 646 GAATTAACGGATTTGGAGTTTACTCAGTTTCACCCGACACTGCTTGTGAA 695
||..|.||||||.|||||||.||.|||||.||||||||.||.||||||||
RBAM_024920__ 646 GAGATCACGGATATGGAGTTCACCCAGTTCCACCCGACCCTCCTTGTGAA 695
BSNT_04048___ 696 AAATGG---TGTTTCCTACGGGCTTGTTTCAGAAGCTGTCAGAGGGGAAG 742
|||.|| ||| .|||||.||..||||.|||||.||.|||||.||||
RBAM_024920__ 696 AAACGGGACTGT---GTACGGCCTGATTTCTGAAGCAGTGAGAGGAGAAG 742
BSNT_04048___ 743 GCGGATGTTTAGTAGA-CGAAAACGGCCGCAGGATTATGGCTGAACGGCA 791
||||||.|||||..|| || ...|||.||||||||.|||||| ||||
RBAM_024920__ 743 GCGGATATTTAGCGGATCG-CTTCGGGCGCAGGATCATGGCT----GGCA 787
BSNT_04048___ 792 -----TCCCTTAGGTGACCTGGCTCCAAGAGATATTGTCTCACGGGTTAT 836
.|.||| |..||..||||.||..|.|||.|.||.|||||||..||
RBAM_024920__ 788 GACACGCGCTT-GAAGATTTGGCGCCCCGGGATGTGGTTTCACGGGCGAT 836
BSNT_04048___ 837 TCACGAAGAAATGGCAAAAGGAAATCGCGTTTATATAGACTTCAGTGCG- 885
|.|.|||||||||...||||.|||||..||||.||||.|.|.||| .||
RBAM_024920__ 837 TTATGAAGAAATGATGAAAGAAAATCCTGTTTTTATAAATTGCAG-CCGA 885
BSNT_04048___ 886 ATTTCTGATTTT--GAAACGCGTTTCCCTACCATCACCGCTATTTGTGAA 933
||..|.|||||| |||| |||||.||.|||||.||.|.|||||||.||
RBAM_024920__ 886 ATAGCCGATTTTAAGAAA--CGTTTTCCGACCATAACAGGTATTTGTCAA 933
BSNT_04048___ 934 AAAGCAGGGGTTGATATCCACAGCGGAAAAATTCCTGTTGCTCCGGGAAT 983
|.|||.||.||||||.|..|.||||| .|||||.||.||.||.|||||
RBAM_024920__ 934 ACAGCCGGTGTTGATCTTGAAAGCGG---GATTCCAGTAGCACCCGGAAT 980
BSNT_04048___ 984 GCATTTCTTAATGGGAGGTGTTTCAGTTAATCGC-------TGGGGAGAA 1026
||||||.||||||||.||.| |||..|| |||||..||
RBAM_024920__ 981 GCATTTTTTAATGGGCGGAG-------TAAAAGCCGATACATGGGGGAAA 1023
BSNT_04048___ 1027 ACGACAGTGCCGGGGCTTTATGCGATTGGCGAGACAGCATGCTCCGGTTT 1076
|||.|.|||||.|...|.||.||.||.||||||||.||.|||.|.||.||
RBAM_024920__ 1024 ACGTCCGTGCCTGATTTGTACGCCATAGGCGAGACCGCCTGCACAGGATT 1073
BSNT_04048___ 1077 ACATGGAGCAAACCGGCTTGCAAGCAATTCTTTATTGGAAGCGCTGGTAT 1126
.||.||.||.|||||.|||||.|||||.||..|..||||||||||||.|.
RBAM_024920__ 1074 GCACGGGGCGAACCGCCTTGCGAGCAACTCACTGCTGGAAGCGCTGGCAA 1123
BSNT_04048___ 1127 TTGGAAAAAGGGCAGCAGAGCATATTATCCAAAAACCGGTTTATAACAGG 1176
..||.|||.|....||.||.|||||.|..||||.|||| ||| ||| ||
RBAM_024920__ 1124 GCGGGAAACGATGTGCTGAACATATCACTCAAACACCG--TTA-AAC-GG 1169
BSNT_04048___ 1177 CA-ATATCAATCAGGGCTAGAAACC----AG-----TGTCGTC----TAC 1212
.| ||||.| |.||||| || ||.|||| |||
RBAM_024920__ 1170 AAGATATAA---------AAAAACCCCGAAGAAATCTGACGTCATCTTAC 1210
BSNT_04048___ 1213 GAGGTGCCGGATATAGAGGTGTATGAACTGCAAAGCAAAATGACAA---- 1258
|.||||||||.|.|..|.|..|||..||.|||..|||||||||||
RBAM_024920__ 1211 -AAGTGCCGGACACAACGCTTCATGTGCTCCAAGCCAAAATGACAACCGG 1259
BSNT_04048___ 1259 -----GCCACATGTCTATTTTGCGGGAACAAA--------GCAGTTTGAT 1295
|| |||.|..||||| ||| ||||
RBAM_024920__ 1260 AGCGGGC---------ATTGTCAGGGAA-AAAGAAAACATGCAG------ 1293
BSNT_04048___ 1296 TGAGCTTAGCAT-CTGGCTT--CATACGCTGCCTTTTCAGGAAGTGAATG 1342
|.|| |.|||| ||||||| || ||| |..||.|.|...|..|.||||
RBAM_024920__ 1294 -GCGC-TGGCATCCTGGCTTAACA-ACG-TATCTGTGCGTCATATAAATG 1339
BSNT_04048___ 1343 TGAAGGATATCACAATTCGGCAGA-----TGGAGCTTTCTCATCTATGGC 1387
|||||||.|||||||| ||| ..|||||.||....||||||.
RBAM_024920__ 1340 TGAAGGAAATCACAAT-----AGAACAAGCCGAGCTATCCTGCCTATGGA 1384
BSNT_04048___ 1388 AAACTGCAAA----GCTGATGACGTTTTCTGCGCTTTTGCGGGAGGAAAG 1433
|.|||||..| |.|| |||| .||.||.|||.|.|||||.|||||
RBAM_024920__ 1385 AGACTGCGCAACTTGTTG-TGAC---CTCAGCCCTTATTCGGGAAGAAAG 1430
BSNT_04048___ 1434 CAGAGGGGCTCACTTCCGCACCGATTTTCCTCATG-CTGAG-GTGAGCTG 1481
|||.||||||||.||.|||.|.|||||||| |..| |.||| ..||| ||
RBAM_024920__ 1431 CAGGGGGGCTCATTTTCGCGCTGATTTTCC-CGGGACGGAGAAAGAG-TG 1478
BSNT_04048___ 1482 GCAAGGAAGACAAATTGTCCATACAAAAAAAGGAACGAAG--ATCAGAAA 1529
|||.||||.||||||..|.|||.|||.|...||||| || ||||||||
RBAM_024920__ 1479 GCACGGAAAACAAATCATTCATTCAACATCTGGAAC--AGCTATCAGAAA 1526
BSNT_04048___ 1530 AAACGAGGGGATT-TGGAACAATGAATCATT-TACAGCTGAAAAAATTAC 1577
||||||..||||| .|||||.|||.| |||| |.|||||||
RBAM_024920__ 1527 AAACGAAAGGATTGGGGAACTATGGA-CATTCTGCAGCTGA--------- 1566
BSNT_04048___ 1578 TGAATCACTTTTTTCTTGA 1596
RBAM_024920__ 1566 ------------------- 1566
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