Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04025 and RBAM_024860

See Amino acid alignment / Visit BSNT_04025 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_04025___bofC.1.9828.seq
#    -bsequence dna-align/RBAM_024860___bofC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04025___bofC-RBAM_024860___bofC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04025___bofC-RBAM_024860___bofC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04025___bofC
# 2: RBAM_024860___bofC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 542
# Identity:     377/542 (69.6%)
# Similarity:   377/542 (69.6%)
# Gaps:          61/542 (11.3%)
# Score: 1286.5
# 
#
#=======================================

BSNT_04025___      1 GTGAAACGATTCAGCACGGCGTATCTTTTGCTGGGC-ATTCTT--TGC--     45
                     |||||||||.|..|  |||         ||||.|.| |||.||  |||  
RBAM_024860__      1 GTGAAACGAATTTG--CGG---------TGCTCGTCTATTGTTTATGCTT     39

BSNT_04025___     46 ------TCAGCGGCAGT----ATTT-----TTAATAGGAGCTCCTTCCCG     80
                           ||.||.|||||    ||||     ..||.||            |
RBAM_024860__     40 ATCTTATCGGCTGCAGTCCTGATTTGCGGAGGAAAAG------------G     77

BSNT_04025___     81 CGCACTTGGCGCGGAAGTGGAGCACTATGAGCCGCTGCAGGTGCATGTGC    130
                     ||||...||.|||||.||.|||||.||.|.||||||.|.||||||.||.|
RBAM_024860__     78 CGCATACGGGGCGGAGGTCGAGCATTACGGGCCGCTTCGGGTGCACGTCC    127

BSNT_04025___    131 AGCTTGAAAAGGTGTATTTGGACGGCGATGTCAGCATTGAGCATAGGCAT    180
                     ||||.||||||||.|||.|||||||.||||||.||||.||.||||.|.||
RBAM_024860__    128 AGCTGGAAAAGGTCTATCTGGACGGTGATGTCGGCATCGAACATACGGAT    177

BSNT_04025___    181 GAAAAAGTGTTTTCTATGGATGATTTTTGGGCAGCTTATGCCGGATGGAC    230
                     ||||..||.||..|.|||||.|||||||||||.||.|||||.||.|||||
RBAM_024860__    178 GAAACCGTTTTGGCGATGGAGGATTTTTGGGCCGCATATGCGGGCTGGAC    227

BSNT_04025___    231 GCTTGTGGAACAAAAAAAGGGATATGTGCTCTTCCGGAAGCAAATGGACG    280
                     |||.||.||.||.|||||.||.|..||.||.|||||.|||||..|.||.|
RBAM_024860__    228 GCTCGTTGAGCAGAAAAAAGGCTTCGTCCTTTTCCGTAAGCATGTTGATG    277

BSNT_04025___    281 ATATATCTCCGCTCAGCAAGGTCAACGGGTATATCGGTGTATCGGATAAT    330
                     |.||.|||||||||||.|||||.|||||.||||||||.||..||||....
RBAM_024860__    278 ACATTTCTCCGCTCAGTAAGGTTAACGGTTATATCGGCGTCACGGACGGG    327

BSNT_04025___    331 GGAGTGATTTCTACTTTTCATGGGCG-GCCTGAGCCAGCT-TCCGAACCA    378
                     ||.||.||.||.||||||||.||.|| .||.||.|  ||| .||||.||.
RBAM_024860__    328 GGCGTCATCTCCACTTTTCACGGCCGTCCCGGATC--GCTGGCCGAGCCG    375

BSNT_04025___    379 ATTCAGTCTTTTTTTCAAATTGATTTAGAAAGGCTGGAAAGCC-ATATGC    427
                     |||||.|||||.||.||.||||||.|||||||.|||||||||| || |||
RBAM_024860__    376 ATTCAATCTTTCTTCCAGATTGATATAGAAAGACTGGAAAGCCGAT-TGC    424

BSNT_04025___    428 AAAAAAATCTGC---TGAAA---GGCATTCCATTTCGGACAAAAGCGGAG    471
                     ||||      ||   ||.||   |||||.||.|...||||||||||||||
RBAM_024860__    425 AAAA------GCACTTGGAACACGGCATACCGTACAGGACAAAAGCGGAG    468

BSNT_04025___    472 TTTGAGGATGTCATCGAACATATGAAGACATACAGCGGGTAA    513
                     ||||||...||.|||||.|||||.|||||.||||||||.|.|
RBAM_024860__    469 TTTGAGAGCGTGATCGATCATATTAAGACTTACAGCGGCTGA    510


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