Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_04023 and RBAM_024850

See Amino acid alignment / Visit BSNT_04023 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:23
# Commandline: needle
#    -asequence dna-align/BSNT_04023___ruvA.1.9828.seq
#    -bsequence dna-align/RBAM_024850___ruvA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04023___ruvA-RBAM_024850___ruvA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04023___ruvA-RBAM_024850___ruvA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04023___ruvA
# 2: RBAM_024850___ruvA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 606
# Identity:     496/606 (81.8%)
# Similarity:   496/606 (81.8%)
# Gaps:           0/606 ( 0.0%)
# Score: 2040.0
# 
#
#=======================================

BSNT_04023___      1 GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATAT     50
                     |||||||||||.||.||.|||||||||||||||||||||||||||||.||
RBAM_024850__      1 GTGATTGAATTCGTGAAGGGGACGATTGATTATGTATCTCCCCAATACAT     50

BSNT_04023___     51 TGTCATAGAGAACGGCGGCATCGGCTATCAGATTTTCACGCCGAATCCGT    100
                     .||.||.||.||||||||.||||||||||||.|.|||||.||||||||||
RBAM_024850__     51 CGTGATTGAAAACGGCGGAATCGGCTATCAGGTCTTCACTCCGAATCCGT    100

BSNT_04023___    101 TTATATATAAGGAGAGAAGCCAGGAAACGATTTTTACATACCATCATATC    150
                     ||||.|||||||..||.|..||.||.||.||||||||.||.||||||||.
RBAM_024850__    101 TTATTTATAAGGTAAGCAATCAAGAGACCATTTTTACGTATCATCATATA    150

BSNT_04023___    151 AGAGAGGATGCTTTTTCGCTTTACGGTTTTTCAACAAGAGAGGAGAAGGC    200
                     |.|||.|||||.|||||..|.||||||||||||||..|.||.||.||.||
RBAM_024850__    151 AAAGAAGATGCCTTTTCTTTGTACGGTTTTTCAACCCGGGAAGAAAAAGC    200

BSNT_04023___    201 GCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCGAAAGGAGCAC    250
                     |||.||.|||||||||.|.|||||.|||||.||.||.||||||||.||.|
RBAM_024850__    201 GCTTTTCACAAAGCTGCTGAACGTCACCGGCATCGGGCCGAAAGGGGCGC    250

BSNT_04023___    251 TTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAA    300
                     |.||||||.|.||.||.||||||||||||||.||||||.||||.||.|||
RBAM_024850__    251 TCGCCATCCTCGGTTCCGGTGATCCCGGAGCCGTCATCGAAGCGATCGAA    300

BSNT_04023___    301 AATGAAGATGAAGCTTTTTTGGTCAAGTTTCCTGGAGTAGGAAAGAAAAC    350
                     .|.|||||||||||.||||||||.||.|||||.||.||.||.||.|||||
RBAM_024850__    301 CAGGAAGATGAAGCCTTTTTGGTGAAATTTCCGGGTGTGGGCAAAAAAAC    350

BSNT_04023___    351 CGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC    400
                     .||.||.|||||||||||.|||||.|||||.||.|||||.||.||.||||
RBAM_024850__    351 GGCGCGGCAGATTATTCTTGATTTGAAAGGCAAACTGGCCGACGTCGTGC    400

BSNT_04023___    401 CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAA    450
                     |||||||||||||.||.|||||.||||||||||...|..|||||||.|||
RBAM_024850__    401 CTGAAATGATTGACAACCTGTTCAATCATGAAGCGCGCATTGAAAAACAA    450

BSNT_04023___    451 ACAGCGGAAACGGCTCTTGAAGAAGCACTTGAAGCCCTCAGGGTTCTCGG    500
                     ...||.||||||||.|||||.||.||.||||||||.|||.||||||||||
RBAM_024850__    451 GAGGCTGAAACGGCGCTTGACGAGGCGCTTGAAGCGCTCCGGGTTCTCGG    500

BSNT_04023___    501 ATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAA    550
                     .||.||.|||||||||||.|||||.||||||||||||.|.|||||.||||
RBAM_024850__    501 CTACGCCGAAAAAGAAATTAAAAAAGTGCTTCCTCACTTAAAAGAGGAAA    550

BSNT_04023___    551 TTGGGCTGACAACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTA    600
                     ..|.|||..|||||||.||||||||||||||||||||.||||||.|||||
RBAM_024850__    551 CGGCGCTTTCAACAGATCAATATGTGAAAAAAGCATTGCAAAAATTATTA    600

BSNT_04023___    601 AAGTAA    606
                     ||||||
RBAM_024850__    601 AAGTAA    606


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.