Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04015 and RBAM_024790

See Amino acid alignment / Visit BSNT_04015 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:22
# Commandline: needle
#    -asequence dna-align/BSNT_04015___yrbG.1.9828.seq
#    -bsequence dna-align/RBAM_024790___yrbG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04015___yrbG-RBAM_024790___yrbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04015___yrbG-RBAM_024790___yrbG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04015___yrbG
# 2: RBAM_024790___yrbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 678
# Identity:     481/678 (70.9%)
# Similarity:   481/678 (70.9%)
# Gaps:          42/678 ( 6.2%)
# Score: 1621.5
# 
#
#=======================================

BSNT_04015___      1 ATGGAAGAGCTTCTCACTATTGCGTTTCGCACAGTCGTATTGTATTTTGT     50
                     ||||||||..||.|||.||||.|||||||.||..|.||..|.||||||.|
RBAM_024790__      1 ATGGAAGATATTTTCATTATTACGTTTCGTACGATTGTGCTTTATTTTAT     50

BSNT_04015___     51 GATATTGGTCATTTTTCGTTTCATGGGCAAACGGGAGATCGGAGAGCTTA    100
                     .||..|.||.|||||..|..|.|||||.||||||||.||||||||.||.|
RBAM_024790__     51 CATTCTTGTGATTTTCAGACTGATGGGAAAACGGGAAATCGGAGAACTGA    100

BSNT_04015___    101 GTATTTTAGATCTCGTTGTCTTTATCATGATGGCTGAAATTGCCGTTTTA    150
                     |.||||||||.||.||.||||..||.|||||.||.||.||||||||.||.
RBAM_024790__    101 GCATTTTAGACCTTGTCGTCTCCATTATGATTGCCGAGATTGCCGTATTG    150

BSNT_04015___    151 GCCATAGAAAACGTAGACGATCATCTATTTCATACCATTTTGCCAATGCT    200
                     ||.||.|||||.|||.|.|||.|.||.||.|||||.|||.||||.||..|
RBAM_024790__    151 GCAATTGAAAATGTAAAAGATAAGCTTTTGCATACGATTGTGCCGATTGT    200

BSNT_04015___    201 TGTATTAATGATCATTCAAGTGA-CTTTGGCATACTTTTCTT----TAAA    245
                     .||.||||||||.||||||||.| |.|||     |||||.||    |.||
RBAM_024790__    201 CGTTTTAATGATTATTCAAGTAAGCCTTG-----CTTTTATTTCGCTCAA    245

BSNT_04015___    246 AAACCGAAAAGTCCGCCAGCTTCTTGACGGTAAGCCGACCATAATTATCA    295
                     ||.||.||||.|.||.|||||.||||||||.||.||.|||||.|||||.|
RBAM_024790__    246 AAGCCAAAAAATACGGCAGCTGCTTGACGGAAAACCCACCATTATTATAA    295

BSNT_04015___    296 AATATGGAAAAATTGACGAAGAAGCCATGAAATCACAGCGATATAATTTT    345
                     ||.|.|||||||||||.|||...||.||||.|||||||||.||.||||||
RBAM_024790__    296 AACAGGGAAAAATTGATGAACGGGCGATGAGATCACAGCGCTACAATTTT    345

BSNT_04015___    346 GATGAT----TTAATGGTTCAACTCAGAGAAAATAGCGTCGACAGAGTAG    391
                     ||.|||    |||    |.||.||.||.||.||||.|.||||.|||.|..
RBAM_024790__    346 GACGATCTTCTTA----TGCAGCTGAGGGAGAATAACATCGATAGAATCT    391

BSNT_04015___    392 CTGACGTATCATTTGCCATATTAGAGCCGTCGGGCAAACTGACTATTGT-    440
                     |||||||.||||.||||||.||.|||.|.||.|||||||||.|.||.|| 
RBAM_024790__    392 CTGACGTGTCATATGCCATTTTGGAGTCTTCAGGCAAACTGTCGATCGTC    441

BSNT_04015___    441 --AAAGAAAGAAAATAGCGGAGAGCATCGGCAGCTCGAAATGCCGCTCAT    488
                       |||||||.|.||||      ||.||..||||.|.||||...||||.||
RBAM_024790__    442 AAAAAGAAAAACAATA------AGGATAAGCAGATGGAAACATCGCTTAT    485

BSNT_04015___    489 TATAGACGGCTTCATTCA-AACAGAAAACCTGTCCAGAATCAGTAAAGAT    537
                     ..|.|||||..||||||| ||| ||..|.|||..|||||||.|.||||||
RBAM_024790__    486 CGTTGACGGGGTCATTCAGAAC-GAGCATCTGGACAGAATCGGGAAAGAT    534

BSNT_04015___    538 AAAAAATGGCT-GCTTGAAAGTTTGCAAAAACACGGATA-CACAAACCCT    585
                     |||.|.||||| |....|||.||.|||||||.| ||||| |.| .|.|.|
RBAM_024790__    535 AAACACTGGCTCGAAAAAAATTTAGCAAAAAGA-GGATATCGC-GATCTT    582

BSNT_04015___    586 TCAGATATTTCATTTTGCTCGTTTACAGACGGAGAATTATTTATTGACGA    635
                     ||.|.|||.|||||.|||.|||||||.|||||.|..||.||||||||...
RBAM_024790__    583 TCGGTTATATCATTCTGCACGTTTACGGACGGCGCTTTTTTTATTGATCT    632

BSNT_04015___    636 AAAAGAT------GGGTACCGCACGTGA    657
                     .||||||      |||.|.|   |||||
RBAM_024790__    633 TAAAGATGAAAAAGGGGAGC---CGTGA    657


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