Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04011 and RBAM_024760
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:22
# Commandline: needle
# -asequence dna-align/BSNT_04011___secDF.1.9828.seq
# -bsequence dna-align/RBAM_024760___secDF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04011___secDF-RBAM_024760___secDF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04011___secDF-RBAM_024760___secDF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04011___secDF
# 2: RBAM_024760___secDF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2226
# Identity: 1788/2226 (80.3%)
# Similarity: 1788/2226 (80.3%)
# Gaps: 18/2226 ( 0.8%)
# Score: 7165.5
#
#
#=======================================
BSNT_04011___ 1 ATGAAAAAAGGACGCTTGATTGCGTTTTTCCTTTTCGTTCTATTGATCGG 50
||||||||||||||||||||||||||||||||..||||..||||||||||
RBAM_024760__ 1 ATGAAAAAAGGACGCTTGATTGCGTTTTTCCTGATCGTATTATTGATCGG 50
BSNT_04011___ 51 CAC-GGGCTTGGGCTACTTTACGAAGCCTGCCGCTAACAATATTACGTTA 99
||| |||| ||||.||.|||||.||.||.||.||.||.||||||||||||
RBAM_024760__ 51 CACAGGGC-TGGGGTATTTTACAAAACCGGCTGCCAATAATATTACGTTA 99
BSNT_04011___ 100 GGATTGGATTTGCAAGGCGGATTTGAGGTGCTGTATGATGTACAGCCTGT 149
|||||||||||.|..|||||.|||||.||.|||||.|||||.|||||.||
RBAM_024760__ 100 GGATTGGATTTACGCGGCGGGTTTGAAGTTCTGTACGATGTGCAGCCCGT 149
BSNT_04011___ 150 AAAAAAAGGTGACAAAATCACAAAAGACGTTCTGGTCAGCACAGTAGAGG 199
.||||||||.||.|||||||||||||||||.||.||||||||.||..|||
RBAM_024760__ 150 CAAAAAAGGCGATAAAATCACAAAAGACGTGCTCGTCAGCACGGTGCAGG 199
BSNT_04011___ 200 CATTGAACCGCCGGGCCAATGTTCTCGGTGTCAGCGAACCGAACATCCAA 249
|..|||||||||||||.||.||||||||.||.|||||.||||||||.||.
RBAM_024760__ 200 CGCTGAACCGCCGGGCTAACGTTCTCGGCGTAAGCGAGCCGAACATTCAG 249
BSNT_04011___ 250 ATTGAAGGGAATAACCGGATTCGCGTTCAGCTCGCTGGTGTGACAAACCA 299
||||||||.||||||||.||.|||||.|||||.||.||.||.||.||.||
RBAM_024760__ 250 ATTGAAGGAAATAACCGCATCCGCGTACAGCTGGCGGGCGTCACGAATCA 299
BSNT_04011___ 300 AAACAGAGCGCGTGAAATTCTGGCGACTGAAGCGCAGCTTTCTTTCAGAG 349
.|||||.|||||.|||||||||.|.||.|||||||||||.||.|||||.|
RBAM_024760__ 300 GAACAGGGCGCGCGAAATTCTGTCAACGGAAGCGCAGCTCTCGTTCAGGG 349
BSNT_04011___ 350 ATACGAATGACAAAGAATTGCTGAATGGCTCTGACCTCGTCGAAAACGGA 399
||||||||||.|||||..||.|.||.||||||||.|||||.||||||||.
RBAM_024760__ 350 ATACGAATGATAAAGAGCTGTTAAACGGCTCTGATCTCGTGGAAAACGGC 399
BSNT_04011___ 400 GCTAAACAAACGTATGATGCCAAAACAAATGAACCGATTGTCAGCATTAA 449
||.||.|||||.|.||||.|.|..||.||.|||||||||||||||.||||
RBAM_024760__ 400 GCGAAGCAAACCTTTGATCCGACGACGAACGAACCGATTGTCAGCGTTAA 449
BSNT_04011___ 450 ACTGAAAGATGCTGATAAATTCGGCGAAGTGACCAAAAAGGTCATGAAAA 499
.|||||.|||||.|||||.||||||||||||||.|||||.||||.|||||
RBAM_024760__ 450 GCTGAAGGATGCGGATAAGTTCGGCGAAGTGACGAAAAAAGTCAAGAAAA 499
BSNT_04011___ 500 TGGCGCCAAACAACCAGCTTGTTATTTGGATGGATTACGAAAAAGGGGAC 549
|||||||.||.||.||||||||.||.|||.|.||||||.|||||||.||.
RBAM_024760__ 500 TGGCGCCTAATAATCAGCTTGTGATCTGGCTTGATTACCAAAAAGGCGAT 549
BSNT_04011___ 550 TCATTTAAAAAAGAGGT--TCAAAAAGAGCACCCTAAATATGTATCCGCC 597
||||||||||||||.|| .||||| |.||.||.||||||||||||||.
RBAM_024760__ 550 TCATTTAAAAAAGAAGTCGGCAAAA--AACATCCGAAATATGTATCCGCT 597
BSNT_04011___ 598 CCAAATGTAAGTAAGGAATTAAACACAACTGACGTTACAATTGAAGGGCA 647
||.|||||.||..|||||||||||||.|..||.||.|||||||||||.||
RBAM_024760__ 598 CCGAATGTGAGCCAGGAATTAAACACGAAGGATGTCACAATTGAAGGCCA 647
BSNT_04011___ 648 ATTTACGGTTCAAGAAGCAAAAGATTTAGCCAGCATTTTAAACGCAGGCG 697
.|||||.||||||.||||.||.|||||.||||..|||||||||||.||||
RBAM_024760__ 648 GTTTACCGTTCAAAAAGCGAAGGATTTGGCCAATATTTTAAACGCGGGCG 697
BSNT_04011___ 698 CACTTCCTGTGAAACTGACTGAAAAGTATTCGACATCAGTAGGCGCACAA 747
|.||.||||||||||||||.|||||.||.||.||.||||||||.||.|||
RBAM_024760__ 698 CGCTGCCTGTGAAACTGACCGAAAAATACTCTACTTCAGTAGGGGCGCAA 747
BSNT_04011___ 748 TTCGGCCAGCAGGCTCTCCATGATACGGTGTTTGCCGGTATTGTCGGTAT 797
|||||.|||||||||.|.|||||||||||....|||||.||..|||||||
RBAM_024760__ 748 TTCGGACAGCAGGCTTTGCATGATACGGTAGAGGCCGGCATCATCGGTAT 797
BSNT_04011___ 798 TGCAATTATTTTCTTATTTATGCTTTTCTATTACCGTCTGCCGGGATTAA 847
|||||||.||||||||||||||||..|.||||||.|.|||||.|||.|.|
RBAM_024760__ 798 TGCAATTGTTTTCTTATTTATGCTGCTTTATTACAGACTGCCTGGACTCA 847
BSNT_04011___ 848 TCGCGGTGATTACGCTATCTGTTTATATCTACATTACACTCCAGATCTTT 897
|.|||||.||||||||.|||||.||..|.||.|||||.||.||..|.|||
RBAM_024760__ 848 TAGCGGTAATTACGCTTTCTGTATACGTATATATTACGCTTCAAGTGTTT 897
BSNT_04011___ 898 GACTGGATGAATGCCGTACTCACGCTTCCGGGAATTGCCGCTCTCATTTT 947
|||||||||.|.||.||.||.|||||||||||.|||||.||.||||||||
RBAM_024760__ 898 GACTGGATGCAGGCGGTGCTGACGCTTCCGGGTATTGCGGCGCTCATTTT 947
BSNT_04011___ 948 AGGTGTCGGGATGGCTGTTGACGCCAACATTATTACCTATGAGCGGATTA 997
.||||||||||||||.||||||||||||||.||.||||||||.|||||.|
RBAM_024760__ 948 GGGTGTCGGGATGGCGGTTGACGCCAACATCATCACCTATGAACGGATAA 997
BSNT_04011___ 998 AAGAAGAGCTCAAGCTAGGAAAGTCAGTCCGCTCTGCCTTCCGTTCAGGA 1047
|||||||.||.||.||.||.||.||.||||||||.||.|||||||||||.
RBAM_024760__ 998 AAGAAGAACTGAAACTCGGCAAATCCGTCCGCTCAGCTTTCCGTTCAGGG 1047
BSNT_04011___ 1048 AACAGACGGTCATTTGCGACGATTTTTGACGCGAATATTACAACCATTAT 1097
||||||||||||||.|||||||||||.||.|||||.||||||||.||.||
RBAM_024760__ 1048 AACAGACGGTCATTCGCGACGATTTTCGATGCGAACATTACAACGATCAT 1097
BSNT_04011___ 1098 TGCAGCGGTTGTGCTCTTTATCTTTGGGACAAGCTCTGTTAAAGGGTTTG 1147
.||||||||.|||||||||||.||.||||||||||||||.||||||||||
RBAM_024760__ 1098 CGCAGCGGTCGTGCTCTTTATTTTCGGGACAAGCTCTGTAAAAGGGTTTG 1147
BSNT_04011___ 1148 CGACAATGCTGATCCTATCGATTTTGACAAGCTTTATCACTGCCGTTTTC 1197
||||.||||||||.||.||.|||.|||||||||||||.||.||.||.|||
RBAM_024760__ 1148 CGACGATGCTGATTCTGTCAATTCTGACAAGCTTTATTACAGCTGTCTTC 1197
BSNT_04011___ 1198 TTATCGAGATTTCTCCTCGCTCTCCTTGTGGAAAGCAGATGGCTTGATCG 1247
.|.||.|||||.||.|||||.||.|||||||||||||||||||||||.||
RBAM_024760__ 1198 CTTTCAAGATTCCTGCTCGCCCTTCTTGTGGAAAGCAGATGGCTTGACCG 1247
BSNT_04011___ 1248 GAAAAAAGGCTGGTTTGGTGTCAATAAGAAACATATCATGGATATTCAGG 1297
|||||||.|||||||.||.|||||.||.|||||.||.||||||||||||.
RBAM_024760__ 1248 GAAAAAAAGCTGGTTCGGCGTCAAGAAAAAACACATTATGGATATTCAGA 1297
BSNT_04011___ 1298 ATACGGATGAAAATACAGAGCCGCATACGCCATTCCAAAAATGGGATTTC 1347
|.||.||.||||||||.||.|||||||||.||||||||||||||||||||
RBAM_024760__ 1298 AGACCGACGAAAATACTGAACCGCATACGGCATTCCAAAAATGGGATTTC 1347
BSNT_04011___ 1348 ACGAGCAAACGCAAATACTTCTTTATTTTCTCCAGTGCAGTCACGGTTGC 1397
||||||||.||.|||||.||||||||||||||.||.||.||.||..||||
RBAM_024760__ 1348 ACGAGCAAGCGAAAATATTTCTTTATTTTCTCAAGCGCTGTAACCATTGC 1397
BSNT_04011___ 1398 CGGGATTATTATCCTGCTTGTGTTCAGGCTGAATCTTGGCATTGACTTTG 1447
.||||||||.|||.||||.||.||.|..||.||.||.||.||.||.||||
RBAM_024760__ 1398 GGGGATTATCATCTTGCTGGTCTTTAAACTCAACCTGGGAATCGATTTTG 1447
BSNT_04011___ 1448 CTAGCGGTGCACGGATTGAAGTGCAAAGCGACCATAAGCTGACAACAGAG 1497
|.|||||.||.||||||||.|||||.|||.|.|||....||||..||.|.
RBAM_024760__ 1448 CAAGCGGCGCGCGGATTGACGTGCAGAGCAATCATTCTTTGACGGCACAT 1497
BSNT_04011___ 1498 CAAGTTGAGAAGGATTTTGAATCTCTGGGTATGGACCCTGATACTGTAGT 1547
||.|||||.||.||||||||.|||||.||.|||||.||.||.|...|.||
RBAM_024760__ 1498 CAGGTTGAAAAAGATTTTGATTCTCTCGGCATGGAACCGGAAAACATCGT 1547
BSNT_04011___ 1548 TCTGTCAGGCGAAAAGAGCAATATCGGTGTTGCCCGTTTTGTCGGGGTGC 1597
.||.||.||..||.|||.|.||.|.|..|..|||||.||||||||.|.||
RBAM_024760__ 1548 GCTTTCTGGTAAAGAGAACCATGTTGCCGCGGCCCGGTTTGTCGGAGAGC 1597
BSNT_04011___ 1598 CAGATAAAGAAACCATAGCAAAAGTAAAAACGTATTTTAAAGACAAATAC 1647
||..||||||||..||.||..||.|.||||||||.|||||.|||||||||
RBAM_024760__ 1598 CATCTAAAGAAAAAATCGCTGAAATCAAAACGTACTTTAAGGACAAATAC 1647
BSNT_04011___ 1648 GGATCAGAGCCAAATGTCAGCACAGTTTCACCGACAGTCGGTAAGGAGCT 1697
||.||.||.|||||.||||||||.||.||.|||||||||||.||.||.||
RBAM_024760__ 1648 GGGTCTGAACCAAACGTCAGCACGGTATCGCCGACAGTCGGAAAAGAACT 1697
BSNT_04011___ 1698 GGCAAGAAATGCGCTGTACGCAGTTGCTATAGCTTCTATTGGCATCATTA 1747
|||..|.|||||..|.||.||.||.||.||.||.||.||.||||||||||
RBAM_024760__ 1698 GGCCCGTAATGCTTTATATGCTGTCGCCATTGCATCAATCGGCATCATTA 1747
BSNT_04011___ 1748 TTTACGTTTCAATCCGATTCGAATACAAAATGGCGATTGCTGCCATCGCC 1797
|||||||.||||||||.|||||.||||.||||||..|.||.||.||.|..
RBAM_024760__ 1748 TTTACGTGTCAATCCGCTTCGAGTACAGAATGGCTGTCGCCGCAATTGTA 1797
BSNT_04011___ 1798 TCATTGCTATATGACGCATTCTTTATCGTCACGTTCTTCAGTATTACAAG 1847
||..||||.||||||||.|||||||||.||.||||.|||||.||||||||
RBAM_024760__ 1798 TCCCTGCTGTATGACGCTTTCTTTATCATCGCGTTTTTCAGCATTACAAG 1847
BSNT_04011___ 1848 GCTTGAGGTAGATGTTACGTTCATCGCGGCCATCTTGACGATAATCGGGT 1897
|||.|||||.|||||.||.||.|||||.||.||..|.||.||||||||.|
RBAM_024760__ 1848 GCTGGAGGTCGATGTCACCTTTATCGCCGCTATTCTCACCATAATCGGTT 1897
BSNT_04011___ 1898 ATTCCATTAACGATACAATCGTTACATTTGACAGGGTCCGCGAGCATATG 1947
|.||.||.||.|||||.|||||||||||||||.||.|.||||||||.|||
RBAM_024760__ 1898 ACTCGATAAATGATACGATCGTTACATTTGACCGGATACGCGAGCAGATG 1947
BSNT_04011___ 1948 AAAAAGCGCAAGCCGAAAACATTTGCCGATCTGAACCATATTGTAAACCT 1997
|||||.||.||||||||..||||||||||||||.|..||||.||.||.||
RBAM_024760__ 1948 AAAAAACGTAAGCCGAAGTCATTTGCCGATCTGGAATATATCGTGAATCT 1997
BSNT_04011___ 1998 GAGCCTGCAGCAAACCTTTACACGTTCAATTAACACTGTATTAACTGTTG 2047
||||.||||||||||||||||||||||.||.||.||.||.||.|||||||
RBAM_024760__ 1998 GAGCTTGCAGCAAACCTTTACACGTTCGATCAATACGGTCTTGACTGTTG 2047
BSNT_04011___ 2048 TGATTGTTGTTGTGACAT--TGCTGATCTTTGGAGCATCTTCTATTACTA 2095
||||||||||.|| |.| ||||.||.||.||..||||.||.|||||.|
RBAM_024760__ 2048 TGATTGTTGTCGT--CGTGCTGCTCATTTTGGGCTCATCGTCAATTACAA 2095
BSNT_04011___ 2096 ACTTCTCAATTGCTTTATTGGTCGGGCTGTTAACAGGCGTTTATTCTTCT 2145
|||||||..|.||||||||||||||..|.||.||.|||||||||||.|||
RBAM_024760__ 2096 ACTTCTCCGTCGCTTTATTGGTCGGTTTATTGACGGGCGTTTATTCCTCT 2145
BSNT_04011___ 2146 CTATACATTGCCGCACAAATTTGGCTTGCATGGAAAGGAAGAGAACT--- 2192
||.|||||.||||||||..|.|||||||.|||||||||.|.||||.|
RBAM_024760__ 2146 CTTTACATCGCCGCACAGCTGTGGCTTGTATGGAAAGGTAAAGAATTTAA 2195
BSNT_04011___ 2193 ---GAAAAAA-GATTCGGCGCAATAA 2214
||||||| .|.|||..| |.|||
RBAM_024760__ 2196 AGGGAAAAAATCAATCGAAG-AGTAA 2220
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