Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04000 and RBAM_024670
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_04000___hisS.1.9828.seq
# -bsequence dna-align/RBAM_024670___hisS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04000___hisS-RBAM_024670___hisS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04000___hisS-RBAM_024670___hisS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04000___hisS
# 2: RBAM_024670___hisS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1281
# Identity: 1058/1281 (82.6%)
# Similarity: 1058/1281 (82.6%)
# Gaps: 12/1281 ( 0.9%)
# Score: 4375.0
#
#
#=======================================
BSNT_04000___ 1 ATGGGATATAACATTCCGAGAGGAACACAGGATATTCTGCCTGGAGAATC 50
||||.||||.|||||||.|||||.||||||||.||.|||||.||.|||||
RBAM_024670__ 1 ATGGCATATCACATTCCAAGAGGCACACAGGACATACTGCCGGGTGAATC 50
BSNT_04000___ 51 AGATCGCTGGCAGTATGTTGAACAAATTATGAGAGACACTTGCCGCACTT 100
|||..|.|||||||..||.||||||||||||||.||.||.||||||||||
RBAM_024670__ 51 AGACAGATGGCAGTTCGTCGAACAAATTATGAGGGAGACGTGCCGCACTT 100
BSNT_04000___ 101 ATCAATATAAAGAAATCCGCACACCGATTTTTGAGCATACAGAACTGTTT 150
||||||||||||||||||||||.||||||||.||||||||.|||.||||.
RBAM_024670__ 101 ATCAATATAAAGAAATCCGCACGCCGATTTTCGAGCATACGGAATTGTTC 150
BSNT_04000___ 151 GCCAGAGGCGTCGGAGAATCAACGGATATCGTACAAAAAGAAATGTATAC 200
||.|||||||||||.||.||.||.||||||||.||.|||||||||||.||
RBAM_024670__ 151 GCAAGAGGCGTCGGTGAGTCTACAGATATCGTGCAGAAAGAAATGTACAC 200
BSNT_04000___ 201 CTTCGAGGACCGCAAAGGCAGAAGCCTGACGCTTCGTCCGGAGGGAACAG 250
.||.||.|||||.|||||.|||||||||||||||||.|||||.|||||||
RBAM_024670__ 201 GTTTGAAGACCGTAAAGGGAGAAGCCTGACGCTTCGGCCGGAAGGAACAG 250
BSNT_04000___ 251 CTGCTGCGGTTCGCGCTTTTAATGAAAACAAGCTGTTCGCAAATCCTGTA 300
|.||.||.||.|||||.||.||||||||.||..|.||.||.||.||.||.
RBAM_024670__ 251 CCGCCGCAGTCCGCGCGTTCAATGAAAATAAATTATTTGCGAACCCGGTG 300
BSNT_04000___ 301 CAGCCGACAAAGCTTTATTATGTCGGGCCGATGTTCCGTTATGAACGTCC 350
||||||||.|||||||||||||||||.||||||||||||||.||||||||
RBAM_024670__ 301 CAGCCGACGAAGCTTTATTATGTCGGACCGATGTTCCGTTACGAACGTCC 350
BSNT_04000___ 351 TCAGACGGGCCGTTACCGCCAGTTTTATCAGTTTGGAATTGAAGCGATTG 400
.|||||.||.||||.||||||.||.|||||.||.||||||||||||||.|
RBAM_024670__ 351 GCAGACAGGGCGTTTCCGCCAATTCTATCAATTCGGAATTGAAGCGATCG 400
BSNT_04000___ 401 GTTCGAAAGACCCTGCAATCGACGCTGAAGTAATGGCGCTTGCGATGAGT 450
|.||.|||||.||.||..|.||.||.|||||.||.|||||||||||||||
RBAM_024670__ 401 GCTCCAAAGATCCGGCCGTGGATGCAGAAGTCATTGCGCTTGCGATGAGT 450
BSNT_04000___ 451 ATTTATGAAAAAGCAGGTTTAGAAA-ACGTTAAGCTTGTCATAAACAGTC 499
|||||....|||||.||||| |||| |.||.||||||||..|.|||||.|
RBAM_024670__ 451 ATTTACCGTAAAGCCGGTTT-GAAACATGTCAAGCTTGTGCTGAACAGCC 499
BSNT_04000___ 500 TCGGCGATCAAGATAGCCGCAAAAGCTACAGAGAAGCGCTTGTGAAACAC 549
|.||.||.||.||.|||||||||..||||.|.||||||||.||.|||||.
RBAM_024670__ 500 TTGGTGACCAGGACAGCCGCAAATCCTACCGGGAAGCGCTCGTCAAACAT 549
BSNT_04000___ 550 TTCGAGCCTCGCATCGAAGAATTTTGTTCAGACTGCCAGTCCCGGCTGCA 599
||.||.||.|||||||.|||.|||||.||||||||||||||.||.|||||
RBAM_024670__ 550 TTTGAACCGCGCATCGGAGAGTTTTGCTCAGACTGCCAGTCGCGCCTGCA 599
BSNT_04000___ 600 CACGAACCCGCTTAGAA-TCTTGGACTGCAAAAAAGACCGAGATCATGAG 648
|||.||||||||.|||| |||| ||||||||.||||||.||||.|||||.
RBAM_024670__ 600 CACAAACCCGCTCAGAATTCTT-GACTGCAAGAAAGACAGAGAGCATGAA 648
BSNT_04000___ 649 CTGATGAAATCGGCACCTTCGATT-TTGACATATTTAAATGAAGAATCAG 697
|||||||||.||||.||.||.||| |||| .||.||||||||||||||||
RBAM_024670__ 649 CTGATGAAAACGGCTCCGTCCATTCTTGA-TTACTTAAATGAAGAATCAG 697
BSNT_04000___ 698 CCGCTTATTTTGACAAAGTGAAACAATACTTAAATGATCTTGGCATTTCG 747
|||||||||||||.|||||.||||||||||||||.|||||.|||||..||
RBAM_024670__ 698 CCGCTTATTTTGAGAAAGTAAAACAATACTTAAACGATCTCGGCATCCCG 747
BSNT_04000___ 748 TATGAAATCGATCCGAACCTTGTGAGAGGGCTGGATTATTACAACCACAC 797
|..|||||.||||||||||||||.||||||||.||||||||.|||||.||
RBAM_024670__ 748 TTCGAAATAGATCCGAACCTTGTCAGAGGGCTTGATTATTATAACCATAC 797
BSNT_04000___ 798 CGCATTTGAAATTATGAGCAATGCGGAAGGCTTTGGCGCGATTACGACAC 847
|||.||||||||||||||||||||.|||||.||.||.||||||||.||.|
RBAM_024670__ 798 CGCTTTTGAAATTATGAGCAATGCCGAAGGATTCGGAGCGATTACAACCC 847
BSNT_04000___ 848 TTGCCGGCGGCGGACGCTACGACGGGCTTGTCGAACAGATCGGCGGACCT 897
||||||||||.||.|||||.|||||||||||.||||||||||||||||||
RBAM_024670__ 848 TTGCCGGCGGGGGCCGCTATGACGGGCTTGTTGAACAGATCGGCGGACCT 897
BSNT_04000___ 898 GAAGCACCGGGCATCGGATTTGCGATGAGCATCGAACGCTTGCTTGCCGC 947
|||||.|||||.||||||||||||||||||||||||||..||||.||.||
RBAM_024670__ 898 GAAGCGCCGGGTATCGGATTTGCGATGAGCATCGAACGTCTGCTGGCAGC 947
BSNT_04000___ 948 AATTGATGCTGAAAAAAGAGAGCTGCCTGTTGATAAGGGAATCGACTGCT 997
.|||||.|||||.||||.||||||.||.||..||.||||.||.|||||||
RBAM_024670__ 948 CATTGACGCTGAGAAAACAGAGCTTCCCGTCAATCAGGGGATTGACTGCT 997
BSNT_04000___ 998 ATATCGTCACACTCGGCGAAAAAGCAAAGGATTATTCTGTTTCATTGGTG 1047
|.|||||.||.|||||.||||||||.|||||||||||.|||||..|.|||
RBAM_024670__ 998 ACATCGTGACGCTCGGAGAAAAAGCGAAGGATTATTCCGTTTCCCTCGTG 1047
BSNT_04000___ 1048 TACAAACTGAGAGAAGCAGGCATTTCCAGTGAAATCGATTATGAAAATAA 1097
|||||||||||||||||.|||||.||.|||||||||||||||||||||||
RBAM_024670__ 1048 TACAAACTGAGAGAAGCGGGCATCTCAAGTGAAATCGATTATGAAAATAA 1097
BSNT_04000___ 1098 GAAAATGAAAGGCCAGTTTAAAACAGCTGATCGCTTAAATGCCAGATTTA 1147
.||.|||||.|||||.||||||||.|||||.|||.|....||..|.||||
RBAM_024670__ 1098 AAAGATGAAGGGCCAATTTAAAACGGCTGACCGCCTCGGCGCACGTTTTA 1147
BSNT_04000___ 1148 TTGCGATTTTGGGTGAAGATGAGCTTGCCCAAAACAAAATCAATGTAAAG 1197
||||||||||.||.||||||||||||||||||||.||||||||||||||.
RBAM_024670__ 1148 TTGCGATTTTAGGGGAAGATGAGCTTGCCCAAAATAAAATCAATGTAAAA 1197
BSNT_04000___ 1198 GATGCACAGACGGGCGAACAGATTGAAGTGGCACTTGATGAATTTATACA 1247
|||||..|.||.||.||.|||..||||||||...|.||.||..|.|||||
RBAM_024670__ 1198 GATGCGGAAACAGGAGAGCAGCGTGAAGTGGTGTTAGACGAGCTGATACA 1247
BSNT_04000___ 1248 TGTGATGAAGGCAAACCAAA---AGGGATAA 1275
.|||.|.||||||.|.|||| ||.||
RBAM_024670__ 1248 AGTGTTAAAGGCAGATCAAAAGCAGTGA--- 1275
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