Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03999 and RBAM_024660
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_03999___aspS.1.9828.seq
# -bsequence dna-align/RBAM_024660___aspS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03999___aspS-RBAM_024660___aspS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03999___aspS-RBAM_024660___aspS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03999___aspS
# 2: RBAM_024660___aspS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1780
# Identity: 1441/1780 (81.0%)
# Similarity: 1441/1780 (81.0%)
# Gaps: 2/1780 ( 0.1%)
# Score: 5837.0
#
#
#=======================================
BSNT_03999___ 1 TTGTTTGGAAGAACATATTATTGCGGTGATATAACTGAAAAAGCAATTGG 50
.||||||||||||||||||||||.||.||.||||||||||||||.|||||
RBAM_024660__ 1 ATGTTTGGAAGAACATATTATTGTGGCGAGATAACTGAAAAAGCGATTGG 50
BSNT_03999___ 51 CGAATCTGTAACGCTGAAAGGCTGGGTCCAAAAAAGACGAGACCTCGGCG 100
||||.|.||.|..||||||||.|||||.||.||..|.||.||.|||||||
RBAM_024660__ 51 CGAAACCGTCAAACTGAAAGGATGGGTGCAGAAGCGGCGCGATCTCGGCG 100
BSNT_03999___ 101 GATTGATTTTTATTGACTTGCGTGACCGTACGGGAATTGTTCAAGTCGTT 150
|.||||||||.|||||.|||||.|||||..||||.|||||.||||||||.
RBAM_024660__ 101 GCTTGATTTTCATTGATTTGCGCGACCGCTCGGGTATTGTGCAAGTCGTG 150
BSNT_03999___ 151 TTCAACCCCGATGTGTCAAAAGAAGCGCTTGCTGTTGCGGAAGGCATCAG 200
||||||||.||.||.||.||.|||||.|||||.|..|||||||..|||||
RBAM_024660__ 151 TTCAACCCTGACGTATCGAAGGAAGCCCTTGCCGCAGCGGAAGCAATCAG 200
BSNT_03999___ 201 AAATGAATACGTGCTTGATGTTCAAGGAAAAGTAGTGGCGCGGGAAGAAG 250
|||.|||||.|||||||||.|..||||.|..||....||.||.|||||||
RBAM_024660__ 201 AAACGAATATGTGCTTGATATCGAAGGCACTGTTTCTGCCCGTGAAGAAG 250
BSNT_03999___ 251 GAACAGTCAATCCGAATTTGAAGACAGGTGCGATCGAAATTCACGCTAAC 300
|.||.||.|||||.||..||||.||.|||...||.|||||..|.|||.|.
RBAM_024660__ 251 GCACGGTGAATCCCAACCTGAAAACCGGTAAAATTGAAATCAAAGCTGAA 300
BSNT_03999___ 301 GGAGTGACAGTACTAAGTGCTGCAAAGACGCCTCCATTTGCGATTTCTGA 350
|..|||||.||.||.|||.|.||.||.||||||||.|||.||||...|||
RBAM_024660__ 301 GCGGTGACGGTGCTCAGTACGGCGAAAACGCCTCCGTTTCCGATCAGTGA 350
BSNT_03999___ 351 TCAAGCAGAAGAAGTGTCAGAGGACGTTCGTTTAAAACACCGTTACTTAG 400
.||.||.|..||.||.||.||.|||||.||.|||||||||||.||.||.|
RBAM_024660__ 351 CCAGGCGGCTGACGTTTCTGAAGACGTCCGGTTAAAACACCGCTATTTGG 400
BSNT_03999___ 401 ATTTGCGCAGACCGGCTATGTTTCAAACGATGCAGATGCGTCATAATGTG 450
||||||||.|.|||||.|||||||||||..||||.|||||.||..|.||.
RBAM_024660__ 401 ATTTGCGCCGCCCGGCGATGTTTCAAACATTGCAAATGCGCCACCAAGTC 450
BSNT_03999___ 451 ACGAAAGCTGTCCGCAGCTTTTTAGATGAAAACGGGTTTCTTGATATTGA 500
||.|||.|..|||||...||.||.|||||||||||.||||||||||||||
RBAM_024660__ 451 ACAAAATCCATCCGCCATTTCTTGGATGAAAACGGATTTCTTGATATTGA 500
BSNT_03999___ 501 AACGCCGATTTTAACAAAAAGCACGCCTGAAGGCGCACGTGACTACTTGG 550
|||.||||||||||||||||||.|.||.||||||||.|||||.|||||.|
RBAM_024660__ 501 AACACCGATTTTAACAAAAAGCTCTCCCGAAGGCGCCCGTGATTACTTAG 550
BSNT_03999___ 551 TGCCGAGCCGTGTGCACGAAGGTGAGTTCTACGCGCTGCCGCAGTCTCCG 600
||||||||||.|||||.|||||.||.||.|||||.||.|||||.||.|||
RBAM_024660__ 551 TGCCGAGCCGGGTGCATGAAGGAGAATTTTACGCCCTTCCGCAATCGCCG 600
BSNT_03999___ 601 CAGCTATTTAAACAGCTTCTGATGGTATCAGGCATTGAACGGTATTATCA 650
|||.|.||||||||||||||||||||.||.|||.||||||||||||||||
RBAM_024660__ 601 CAGATTTTTAAACAGCTTCTGATGGTGTCGGGCTTTGAACGGTATTATCA 650
BSNT_03999___ 651 GATTGCCCGCTGTTTCCGTGATGAAGACTTGCGTGCGGACCGCCAGCCTG 700
..|.||||||||.|||||.|||||||||||||||||.|||||||||||.|
RBAM_024660__ 651 AGTGGCCCGCTGCTTCCGCGATGAAGACTTGCGTGCCGACCGCCAGCCGG 700
BSNT_03999___ 701 AGTTCACGCAAATTGATATTGAAATGTCCTTTATGAGCCAGGAAGACATT 750
|.||.|||||.||||||||.|||||||||||||||||.||.||.|||||.
RBAM_024660__ 701 AATTTACGCAGATTGATATCGAAATGTCCTTTATGAGTCAAGAGGACATC 750
BSNT_03999___ 751 ATGTCATTGGCTGAGGATATGATGGC-AAAGATTATGCGTGAAACAAAAG 799
|||.|..||||.||.||.|||||||| |||| |.||||.|||||||||||
RBAM_024660__ 751 ATGGCTCTGGCGGAAGAGATGATGGCGAAAG-TCATGCTTGAAACAAAAG 799
BSNT_03999___ 800 GCGTGGAAATTAAGCTTCCTCTTCCCAGAATGACGTATGACGAAGCAATG 849
|.||.|||.|...||||||.|||||..|||||||.|||||.|||||.|||
RBAM_024660__ 800 GTGTTGAAGTACCGCTTCCGCTTCCGCGAATGACATATGAAGAAGCGATG 849
BSNT_03999___ 850 AACAAGTACGGTTCTGATAAACCGGATACGCGTTTTGACATGCTTTTGAC 899
||||..||||||||.||.||.||.||.||.||.||.|.||||||..||||
RBAM_024660__ 850 AACAGCTACGGTTCCGACAAGCCTGACACCCGCTTCGGCATGCTGCTGAC 899
BSNT_03999___ 900 AGATGTGTCTGACATTGTGAAGGATACGGAATTTAAAGTATTCTCATCAG 949
.||.|||||.|||||.|||||.|||||.||||||||.||.||||||||||
RBAM_024660__ 900 GGACGTGTCAGACATAGTGAAAGATACTGAATTTAAGGTGTTCTCATCAG 949
BSNT_03999___ 950 CTGTAGCAAACGGCGGTGTGGTCAAAGCCATCAACGTAAAAGGCGGTGCC 999
|.||.|||||||||||.||.||.|||||.|||||.||.|||||||.||||
RBAM_024660__ 950 CCGTGGCAAACGGCGGCGTTGTAAAAGCGATCAATGTCAAAGGCGCTGCC 999
BSNT_03999___ 1000 GGCGATTACTCCAGAAAAGACATCGATGCTCTTGGCGCTTTTGCTGCAAA 1049
|||||.||.|||||||||||.||||||||.||.||||.||||||.|.|||
RBAM_024660__ 1000 GGCGACTATTCCAGAAAAGATATCGATGCGCTCGGCGTTTTTGCCGGAAA 1049
BSNT_03999___ 1050 CTATGGGGCGAAAGGACTTGCCTGGGTGAAAGTTGAAGCAGACGGAGTGA 1099
.||.||.||||||||.||.||.|||||||||||||||||.|||||.||.|
RBAM_024660__ 1050 TTACGGCGCGAAAGGTCTCGCTTGGGTGAAAGTTGAAGCCGACGGCGTAA 1099
BSNT_03999___ 1100 AAGGACCGATCGCTAAATTCTTTGATGAAGAAAAGCAGTCTAAGCTGATT 1149
||||.|||||.||.|||||||||||||||||.||||||.|.||.|||..|
RBAM_024660__ 1100 AAGGCCCGATTGCGAAATTCTTTGATGAAGAGAAGCAGGCAAAACTGGCT 1149
BSNT_03999___ 1150 GAAGCACTTGATGCTGCTGAAGGTGATTTGTTGCTGTTCGGAGCGGATCA 1199
|||||.|||||.|||.|||||||.|||.||.|.||||||||.||.|||.|
RBAM_024660__ 1150 GAAGCGCTTGAAGCTTCTGAAGGCGATCTGCTCCTGTTCGGCGCTGATAA 1199
BSNT_03999___ 1200 ATTTGAAGTTGTGGCCGCATCACTCGGCGCGCTGCGTTTAAAGCTTGGGA 1249
.|||||.||||||||...|||.|||||||||||.||.||||||||.||.|
RBAM_024660__ 1200 GTTTGAGGTTGTGGCTCAATCCCTCGGCGCGCTTCGCTTAAAGCTCGGCA 1249
BSNT_03999___ 1250 AAGAGCGCGGGCTGATTGACGAAAACCTGTTCAATTTCTTATGGGTCATT 1299
||||.|||||.|||||||||||||.|||.|||||.|||.|.|||||..|.
RBAM_024660__ 1250 AAGAACGCGGCCTGATTGACGAAAGCCTCTTCAACTTCCTGTGGGTTGTG 1299
BSNT_03999___ 1300 GACTGGCCGCTATTAGAGCATGATCCTGAGGAAGGCCGTTTCTACGCAGC 1349
|||||||||.||.|.||||||||....|||||||||||||||||.||.||
RBAM_024660__ 1300 GACTGGCCGTTACTGGAGCATGACGAGGAGGAAGGCCGTTTCTATGCGGC 1349
BSNT_03999___ 1350 GCACCATCCGTTCACAATGCCTGTCCGGGAAGACCTTGAGCTGATTGAAA 1399
.|||||||||||.||||||||||||||.|||||.|||||.||||||||||
RBAM_024660__ 1350 TCACCATCCGTTTACAATGCCTGTCCGTGAAGATCTTGACCTGATTGAAA 1399
BSNT_03999___ 1400 CAGCGCCTGAAGACATGAAAGCACAAGCTTATGACCTCGTCTTAAACGGC 1449
|.|||||||||||.||||||||.||.|||||.|||||.||||||||||||
RBAM_024660__ 1400 CGGCGCCTGAAGATATGAAAGCGCAGGCTTACGACCTTGTCTTAAACGGC 1449
BSNT_03999___ 1450 TATGAGCTTGGCGGCGGTTCAATCCGTATTTTCGAAAAGGATATTCAGGA 1499
|||||.||.|||||.||.||||||||||||||.|||||.||..|||||||
RBAM_024660__ 1450 TATGAACTCGGCGGAGGCTCAATCCGTATTTTTGAAAAAGACGTTCAGGA 1499
BSNT_03999___ 1500 AAAAATGTTTGCGCTTCTCGGCTTCTCACCAGAAGAAGCGGCTGAACAGT 1549
|||||||||.|.||||||||||||..||..|||||||||||..||..|||
RBAM_024660__ 1500 AAAAATGTTCGGGCTTCTCGGCTTTACAAAAGAAGAAGCGGAGGAGGAGT 1549
BSNT_03999___ 1550 TCGGATTCCTGCTGGAAGCATTTGAATACGGCGCTCCTCCGCACGGCGGA 1599
||||||.|||.||.|||||.||||||||||||||.|||||||||||||||
RBAM_024660__ 1550 TCGGATACCTTCTTGAAGCCTTTGAATACGGCGCCCCTCCGCACGGCGGA 1599
BSNT_03999___ 1600 ATCGCACTTGGCTTAGACCGTCTCGTTATGCTTCTCGCAGGACGTACGAA 1649
|||||.||.||||||||||||.|.|||||||||||.||.||.||.||.||
RBAM_024660__ 1600 ATCGCGCTCGGCTTAGACCGTTTGGTTATGCTTCTTGCGGGCCGCACAAA 1649
BSNT_03999___ 1650 CCTGAGAGATACGATTGCATTCCCGAAAACGGCAAGTGCAAGCTGCCTGA 1699
|.|.|||||||||||.||.|||||||||||||||||.|||||||||||..
RBAM_024660__ 1650 CTTAAGAGATACGATCGCTTTCCCGAAAACGGCAAGCGCAAGCTGCCTTC 1699
BSNT_03999___ 1700 TGACAGAGGCGCCTGGAGAAGTAAGCGACGCTCAGCTTGACGAGCTTCAT 1749
|.||.||.|||||.||.|||||.||||||||.||||||||.||.|||||.
RBAM_024660__ 1700 TTACGGAAGCGCCCGGCGAAGTGAGCGACGCCCAGCTTGAAGAACTTCAC 1749
BSNT_03999___ 1750 CTTTCTATCAAGAAAAAAGTTAAGAACTGA 1779
||||||.||||.|.||||||.||..|.|.|
RBAM_024660__ 1750 CTTTCTGTCAAAAGAAAAGTGAAACAGTAA 1779
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