Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03997 and RBAM_024650

See Amino acid alignment / Visit BSNT_03997 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:19
# Commandline: needle
#    -asequence dna-align/BSNT_03997___yrvM.1.9828.seq
#    -bsequence dna-align/RBAM_024650___yrvM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03997___yrvM-RBAM_024650___yrvM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03997___yrvM-RBAM_024650___yrvM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03997___yrvM
# 2: RBAM_024650___yrvM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 766
# Identity:     619/766 (80.8%)
# Similarity:   619/766 (80.8%)
# Gaps:           2/766 ( 0.3%)
# Score: 2495.0
# 
#
#=======================================

BSNT_03997___      1 TTGTTACACCAGTTTTCACGCAATGAATTAGCTATCGGAAAAGAAGGCCT     50
                     ||||||||.||||||||..|.|||||..||||.||.|||||||||||.||
RBAM_024650__      1 TTGTTACATCAGTTTTCCAGAAATGAGCTAGCGATTGGAAAAGAAGGGCT     50

BSNT_03997___     51 TGAAACGCTGAAAAACAGCACAGTTGCTGTGCTTGGAGTCGGAGGAGTTG    100
                     .||.|||.|.|||||||||||.||.||.||.||.||.|||||.|||||.|
RBAM_024650__     51 GGACACGTTAAAAAACAGCACGGTGGCCGTTCTCGGCGTCGGCGGAGTCG    100

BSNT_03997___    101 GGTCGTTCGCGGCGGAAGCGCTCGCGCGGTCAGGCGTCGGCCGCATTCTG    150
                     |.||.|||||.||.|||||..|.|||.||||.||.||.||.||.||..||
RBAM_024650__    101 GTTCATTCGCAGCCGAAGCATTGGCGAGGTCCGGAGTGGGGCGGATCGTG    150

BSNT_03997___    151 CTTGTCGACAAAGATGATGTCGACATTACAAATGTAAACCGTCAGCTTCA    200
                     ||||||||.|||||||||||.|||||||||||.||||||||.|||||.||
RBAM_024650__    151 CTTGTCGATAAAGATGATGTTGACATTACAAACGTAAACCGCCAGCTGCA    200

BSNT_03997___    201 CGCGCTGCTT-TCAACTGTCGGACAGCCGAAAGTTGATTTAATGAAGGCG    249
                     .||||| ||| ||.||.||.||||||||||||...||.||.|||||.|||
RBAM_024650__    201 TGCGCT-CTTGTCGACGGTGGGACAGCCGAAAACAGACTTGATGAAAGCG    249

BSNT_03997___    250 CGGATCGCAGACATTAACCCGGAGTGTGAAGTAATCTCGTTAAAAATGTT    299
                     ||||||||.||.|||||.|||||.||.||.||..||.|.|||||||||||
RBAM_024650__    250 CGGATCGCGGATATTAATCCGGATTGCGATGTCGTCGCCTTAAAAATGTT    299

BSNT_03997___    300 CTATACGGAGGAAACGTATGAGCAGTTTTTTGACTATGATCTTGACTATG    349
                     .|||||.||.||.||.|||||||||||.|||||.|||...|||||.||.|
RBAM_024650__    300 TTATACAGAAGAGACATATGAGCAGTTCTTTGAGTATCCGCTTGATTACG    349

BSNT_03997___    350 TCATTGATGCGTCAGACACCATTTGTTATAAAATTCATTTAATGAAAGAA    399
                     |||||||.|||||.||.||.|||..|||||||||||||.|.|||||||||
RBAM_024650__    350 TCATTGACGCGTCGGATACGATTCATTATAAAATTCATCTGATGAAAGAA    399

BSNT_03997___    400 TGTCTAAAACGGGATATTCCGCTCATCTCCAGCATGGGTGCTGCAAATAA    449
                     |||||.||||||.||.|||||||.||.||.||||||||.||.||.|||||
RBAM_024650__    400 TGTCTGAAACGGAATGTTCCGCTGATTTCAAGCATGGGAGCGGCGAATAA    449

BSNT_03997___    450 AACGGATCCGACACGCTTCCAAATCGCTGATATCTCAAAAACGCACACTG    499
                     |||.||.|||||||||||.||.||.||||||||.||||||||.||.||.|
RBAM_024650__    450 AACAGACCCGACACGCTTTCAGATTGCTGATATTTCAAAAACCCATACCG    499

BSNT_03997___    500 ATCCAATTGCGAAGGTCGTCCGTACGAAATTACGCAAAGAGGGGATCAAA    549
                     ||||.|||||.||.||||||||.||.|...|.|||||||||||.||.|||
RBAM_024650__    500 ATCCGATTGCCAAAGTCGTCCGCACAAGGCTTCGCAAAGAGGGCATTAAA    549

BSNT_03997___    550 AAAGGCGTCCAAGTGATTTTCTCTGATGAAAGCCCGATTGTCATTCGGGA    599
                     ||||||||.||.||.|||||.|||||||||||||||||.|||||.||.||
RBAM_024650__    550 AAAGGCGTACAGGTCATTTTTTCTGATGAAAGCCCGATCGTCATCCGTGA    599

BSNT_03997___    600 AGATGTCAGAAAAGAAGTGGGAAATGACGAAGCGAAAATCCGTAAAGCAA    649
                     |||.||||||||||||||.||.|||||.||||||||||||||.|||||..
RBAM_024650__    600 AGACGTCAGAAAAGAAGTCGGGAATGATGAAGCGAAAATCCGCAAAGCGC    649

BSNT_03997___    650 AAATGCCGCCTTCCTCTAATGCTTTTGTGCCGTCAGTTGCAGGTTTGATT    699
                     ||||||||||.||.||.||.||.|..||.||||||||.||.|||.|||||
RBAM_024650__    650 AAATGCCGCCGTCTTCCAACGCCTGGGTTCCGTCAGTGGCCGGTCTGATT    699

BSNT_03997___    700 ATGGGCGGACATGTTGTCATGGATCTTTTGAAAGACATAGAAATCAAACG    749
                     |||||||||||||||||||||||.||.||.||.|||||.||.||.|||||
RBAM_024650__    700 ATGGGCGGACATGTTGTCATGGAACTCTTAAAGGACATCGACATTAAACG    749

BSNT_03997___    750 TGTGAAGGATAAATAA    765
                     .||.||.|||||||||
RBAM_024650__    750 GGTTAAAGATAAATAA    765


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