Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03996 and RBAM_024640
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:19
# Commandline: needle
# -asequence dna-align/BSNT_03996___rarA.1.9828.seq
# -bsequence dna-align/RBAM_024640___yrvN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03996___rarA-RBAM_024640___yrvN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03996___rarA-RBAM_024640___yrvN.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03996___rarA
# 2: RBAM_024640___yrvN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1280
# Identity: 1001/1280 (78.2%)
# Similarity: 1001/1280 (78.2%)
# Gaps: 25/1280 ( 2.0%)
# Score: 3881.5
#
#
#=======================================
BSNT_03996___ 1 ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTAT 50
|||||.||||||||.|||||||||||.||..|.||.||.||.||.|||||
RBAM_024640__ 1 ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTAT 50
BSNT_03996___ 51 CGGCCAGCAGCATCTGGTGGCTGAAGATAAAATTATTGGCAGAATGGTCC 100
|||||||.|.|||.||||....||.||||||||.||.|||||||||||.|
RBAM_024640__ 51 CGGCCAGGAACATTTGGTCAAAGAGGATAAAATCATCGGCAGAATGGTGC 100
BSNT_03996___ 101 AGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGA 150
..|||||.||.||.|||||||||||..|||||||.|||||.||.||.|||
RBAM_024640__ 101 GTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGA 150
BSNT_03996___ 151 AAAACATCAATCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCG 200
|||||.||.|||||.|||||.|||||.||.||.|||||.||.||.||..|
RBAM_024640__ 151 AAAACGTCCATCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAG 200
BSNT_03996___ 201 AAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAAATCGTAGCTC 250
.||..|||||||.||||||.|.|||||||||||.|||||.||.||.|..|
RBAM_024640__ 201 GAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAGATTGTCGTAC 250
BSNT_03996___ 251 AGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCAC 300
|||||||.||.|||||.|||||.||.|||||.||.||.||.|||||.|||
RBAM_024640__ 251 AGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCAC 300
BSNT_03996___ 301 AGGCTGGATAAAGGAAAACAGGATTTTCTATTACCCTATTTAGAAAACGG 350
|||||.|||||.|||||.|||||||||||..|.|||||||||||||||||
RBAM_024640__ 301 AGGCTTGATAAGGGAAAGCAGGATTTTCTGCTGCCCTATTTAGAAAACGG 350
BSNT_03996___ 351 GATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA 400
.|||||.|||||.|||||.||.|||||.||.|||||.|||||||||||||
RBAM_024640__ 351 CATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA 400
BSNT_03996___ 401 ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACA 450
|.|||||.||||||||||||||||||||.|||||||||||||||||||||
RBAM_024640__ 401 ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACA 450
BSNT_03996___ 451 CCTGATCTGATTAAACAGGCACTGGAACGCGCGCTC-CATGATGAGCATC 499
||.||||||||.||.||||||.|||||.|.|||||| || |||||.||.|
RBAM_024640__ 451 CCCGATCTGATCAAGCAGGCATTGGAAAGAGCGCTCACA-GATGAACACC 499
BSNT_03996___ 500 GGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCAT 549
||||.||.||..||||....||.||..|.||.||..|.||||||||.|||
RBAM_024640__ 500 GGGGGCTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCAT 549
BSNT_03996___ 550 TTTGCCCACGGATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGA 599
||.||.||.||.|||||||||||.||||||||.|||||.||.||.|||||
RBAM_024640__ 550 TTCGCGCAAGGGTGCGGAGGAGACGTCCGCTCAGCTTTGAACGCACTTGA 599
BSNT_03996___ 600 GCTTGCCGTGTTGTCAACGAAGGAGTC-AGCAGACGGTGAAATTCAC--- 645
|||||||||..|.||.||.|||||.|| ||| ||||| |||
RBAM_024640__ 600 GCTTGCCGTCCTCTCCACAAAGGAATCAAGC-GACGG-------CACGAT 641
BSNT_03996___ 646 ----ATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTT 691
||||||...||.||.|||||||||||..|||||||||||||||.|.
RBAM_024640__ 642 CCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATA 691
BSNT_03996___ 692 CTCACGATAAAGATGGTGACGCGCATTATGATGTACTGTCCGCTTTTCAA 741
||||.||||||.|.|||||.|||||||||||.||..|.|||||.||.|||
RBAM_024640__ 692 CTCATGATAAAAACGGTGATGCGCATTATGACGTCTTATCCGCCTTCCAA 741
BSNT_03996___ 742 AAATCGATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAG 791
|||||||||||.|||||.||.||.|||||.||.|||||.|||.||||..|
RBAM_024640__ 742 AAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCG 791
BSNT_03996___ 792 ATTAATTGAAGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTA 841
..|.||.||||||||.||.||.||.|||||..|||||.|..|.||.||.|
RBAM_024640__ 792 TCTGATCGAAGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGA 841
BSNT_03996___ 842 TCGCCTATGAAGATATCGGTTTAGCAAGCCCGCAAGCCGGCCCTAGAGTG 891
|||||||||||||||||||..|.|||||||||||.||.|||||..|.|||
RBAM_024640__ 842 TCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAGGCCCCCGGGTG 891
BSNT_03996___ 892 CTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAAT 941
||||.|||.|||||||||||.||.||..||||.|||||.||||||.||||
RBAM_024640__ 892 CTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAAT 941
BSNT_03996___ 942 CCCGCTGGCCAACGCAGTTATTGAGCTTTGCCTCTCACCGAAATCAAACT 991
.|||||||||||.||.||.||.||..|.||||||||.||.||||||||||
RBAM_024640__ 942 TCCGCTGGCCAATGCGGTAATCGAATTATGCCTCTCGCCAAAATCAAACT 991
BSNT_03996___ 992 CTGCCATTCT-GGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA 1040
|.|||| ||| .||..|.||||||||.||...|||.|||||..|.||.||
RBAM_024640__ 992 CCGCCA-TCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACAGGTAA 1040
BSNT_03996___ 1041 AATTGGTGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTC 1090
|||.||.|||||.|||||.||||||||||||||.||.||||||||.||.|
RBAM_024640__ 1041 AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCC 1090
BSNT_03996___ 1091 AGGAATTAGGAAGAGGAATCGACTATAAATACCCGCACAATTACGACAGC 1140
|.||..|.|||.|.||.||||.||||.||||.||.|||.|||.|||.|.|
RBAM_024640__ 1091 AAGAGCTCGGACGCGGGATCGGCTATCAATATCCTCACGATTTCGAGAAC 1140
BSNT_03996___ 1141 GGTTGGGTCGAACAACAATACCTCCCTGATTCTCTGAAAAATAAGCAATA 1190
||.|||||||||||.|||||..|.|||||..|..|.|||||.||||||||
RBAM_024640__ 1141 GGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAGCAATA 1190
BSNT_03996___ 1191 CTATAAGCCGAAACAGACAGGAAAATTCGAATCCGCCTTAAAGCAGGTGT 1240
||||||.||||||||.||.||.|||||.|||.|||||.|||||||.||||
RBAM_024640__ 1191 CTATAAACCGAAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGT 1240
BSNT_03996___ 1241 ATGATAAATTAATGAA----AAGAAAATAA 1266
||||.|||.|.||||| || |||||||
RBAM_024640__ 1241 ATGAAAAACTGATGAAGCAGAA-AAAATAA 1269
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