Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03990 and RBAM_024590
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:18
# Commandline: needle
# -asequence dna-align/BSNT_03990___yrrC.1.9828.seq
# -bsequence dna-align/RBAM_024590___yrrC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03990___yrrC-RBAM_024590___yrrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03990___yrrC-RBAM_024590___yrrC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03990___yrrC
# 2: RBAM_024590___yrrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2419
# Identity: 1858/2419 (76.8%)
# Similarity: 1858/2419 (76.8%)
# Gaps: 62/2419 ( 2.6%)
# Score: 7065.0
#
#
#=======================================
BSNT_03990___ 1 GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAA 50
|| |||||||||.||..|.||.|||.||||.|||.||||
RBAM_024590__ 1 GT------------GGATCAGCTGAACATCGAAGAACAGCCGTATGTAAA 38
BSNT_03990___ 51 AGG-GACAGTCAACACAGTCATCTATCATAATGACACCAATTTATATACG 99
||| |.||.|| |.||.|||||.|||||.|||||||||||..|.|||||.
RBAM_024590__ 39 AGGCGTCATTC-ATACGGTCATTTATCACAATGACACCAACCTGTATACA 87
BSNT_03990___ 100 GTTCTGAAAGTGAAAGTCACAGAGACCTCCGAAGCCATTGAAGATAAAGC 149
||.||||||||.||.||..||||.||.||.||.||.||.|||||.||.|.
RBAM_024590__ 88 GTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGT 137
BSNT_03990___ 150 CGTATCCGTGACGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACA 199
|||||||||.|||||||||||||||..|||.||||||||.||||||||||
RBAM_024590__ 138 CGTATCCGTAACGGGCTACTTCCCTCTGCTGCAAGAAGATGAGACCTACA 187
BSNT_03990___ 200 CGTTTTACGGAAAGATCGTAACCCATCCAAAGTTCGGGCTCCAATTTCAG 249
|.|||||||||||.|.||..||.|||||.||||||||.||.|||||||||
RBAM_024590__ 188 CATTTTACGGAAAAACCGCCACGCATCCTAAGTTCGGCCTGCAATTTCAG 237
BSNT_03990___ 250 GCGGAGCATTTCAAAAAGGAGATTCCAACGACTAAGGAAGGCATCATTCA 299
||.||.||.||.|||||.||.|||||.||.||.||.|||||.||||||||
RBAM_024590__ 238 GCTGAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGGATCATTCA 287
BSNT_03990___ 300 ATATTTATCGAGTGATTTATTCGAGGGGATCGGCAAAAAAACAGCTGAAG 349
.||||||||.||||||.|.||.||.||.|||||.||||||||.||.||||
RBAM_024590__ 288 CTATTTATCAAGTGATCTGTTTGAAGGAATCGGAAAAAAAACGGCAGAAG 337
BSNT_03990___ 350 AAATTGTGAAAAAGCTGGGCGACAGCGCCATTAATAAAATATTGGCTGAT 399
||||.||.||||||||.||.|||.||||..|.||||||||..||.|.|||
RBAM_024590__ 338 AAATCGTCAAAAAGCTCGGAGACGGCGCGCTCAATAAAATTCTGACGGAT 387
BSNT_03990___ 400 GCTTCAGTGCTTTATGATGTTCCCAGACTCTCAAAAAAGAAAGCCGACAC 449
||.||.||||||||.|||||.||.|.|.|.||.|||||||||||.||.|.
RBAM_024590__ 388 GCGTCGGTGCTTTACGATGTGCCGAAAATGTCGAAAAAGAAAGCGGATAA 437
BSNT_03990___ 450 GCTGGCTGGCGCATTGCAGCGGCATCAGGGACTGGAGCAAATCATGATTT 499
|||.||.||.|...||||||||||||||||.||.|||||.||.|||||.|
RBAM_024590__ 438 GCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTTGAGCAGATTATGATCT 487
BSNT_03990___ 500 CCTTGAATCAGTTTGGCTTTGGCCCGCAGCTGTCTATGAAAATCTATCAA 549
|..||||.||.|..||.||.||.||.|||||.||.||||||||.|||||.
RBAM_024590__ 488 CTCTGAACCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAG 537
BSNT_03990___ 550 GCCTATGAATCCGAGACGCTTGAAAAGATTCAGGAAAATCCTTATCAGCT 599
|||||.|||.|.||.||.||.||.||.|||||||||||||||||||||||
RBAM_024590__ 538 GCCTACGAAACGGAAACACTGGAGAAAATTCAGGAAAATCCTTATCAGCT 587
BSNT_03990___ 600 TGTGAAGGATGTAGAAGGCATCGGGTTTGGGAAAGCGGATGAGCTGGGCA 649
|||.||.||.||.|||||||||||.||||.||||||.||.|||||||||.
RBAM_024590__ 588 TGTAAAAGACGTTGAAGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCG 637
BSNT_03990___ 650 GCAGAATGGGTCTTTCGGGTAACCATCCTGAGCGGGTAAAAGCTGCTATT 699
|.|.|||||||||.||.||.|||||.||.||||||.|.|||||.||.||.
RBAM_024590__ 638 GAAAAATGGGTCTGTCAGGAAACCACCCGGAGCGGATCAAAGCGGCAATC 687
BSNT_03990___ 700 TTGTACACGCTTGAAACGACTTGTCTGTCAGAGGGGCACACGTACATAGA 749
||.||.|||.|||||.||||.|||||.|||||.||.||.|||||||||||
RBAM_024590__ 688 TTATATACGATTGAATCGACCTGTCTTTCAGAAGGCCATACGTACATAGA 737
BSNT_03990___ 750 AACGGAACAGCTGATCATCGACACTCAATCACTGTTAAACCAGTCAGC-- 797
.||..|.||||||||.|||.|.||.|||.|.||..|.||.||||||||
RBAM_024590__ 738 GACAAAGCAGCTGATAATCAATACGCAAACGCTCCTGAATCAGTCAGCTG 787
BSNT_03990___ 798 AAGGGAAGGGCAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTG 847
|||| .||| |||.||||.|||||||||||.|||.|||..||.||.|
RBAM_024590__ 788 AAGG---CGGC--CGCGTCACGGAAATGGATGCGGCTGACGGCATCATCG 832
BSNT_03990___ 848 CCCTTGGAGAAAATAAAGACATTGTCATAGAAGATGGCCGCTGTTATTTT 897
||||.||.||.|.|||.||.||.|||||.||||..|..|||||.||||||
RBAM_024590__ 833 CCCTCGGGGAGAGTAAGGATATCGTCATTGAAGGAGAGCGCTGCTATTTT 882
BSNT_03990___ 898 CCTTCGCTGTTTTACGCAGAACAAAACGTTGCAAA--GCGTGTGAAACAT 945
||.||..||||||||||.||||||||.||.||||| |||||....||||
RBAM_024590__ 883 CCGTCCTTGTTTTACGCCGAACAAAATGTCGCAAAACGCGTGCTCGACAT 932
BSNT_03990___ 946 ATCGCTAGC-CAAACCGAATATGAGAACCAGTTTCCCGAATCAGAGTTTT 994
..|| || ||.||.||.||||...|.||.|||||.|||||.||.|||.
RBAM_024590__ 933 TGCG---GCTCAGACGGAGTATGCCGATCAATTTCCTGAATCGGAATTTC 979
BSNT_03990___ 995 TGCTCGCGTTGGGAGAACTGGAAGAACGGATGAATGTTCAGTATGCCCCC 1044
||||.||..|.||.||||||||||||||||||||||||||.||.||.||.
RBAM_024590__ 980 TGCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCACCA 1029
BSNT_03990___ 1045 AGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTT 1094
|||||.|||||.||.|||||||||||.||.||.||.|||||||||.|..|
RBAM_024590__ 1030 AGCCAAAAGGATGCCATTCAAAAAGCGCTGTCTTCACCGATGCTTTTACT 1079
BSNT_03990___ 1095 AACAGGCGGCCCGGGAACAGGAAAAACGACGGTAATCAGAGGGATTGTCG 1144
.||.||.||.||.||.||.||.||||||||.||.||.|.|||.||.||.|
RBAM_024590__ 1080 GACCGGAGGACCTGGGACGGGGAAAACGACCGTTATTAAAGGAATCGTGG 1129
BSNT_03990___ 1145 AGCTCTACGGAGAGCTTCACGGTGTGTCACTAGATCC--GTCAGCTTATA 1192
|..|.|||.|.||.||.|||||.||.||.||.||.|| || |.|||||
RBAM_024590__ 1130 AATTATACAGTGAACTGCACGGAGTATCGCTTGACCCCGGT--GATTATA 1177
BSNT_03990___ 1193 AAAAGGATGAAGCTTTTCCGAT--TGTTTTGGCCGCTCCGACAGGGAGAG 1240
||||.||.||.||.||.|||.| ||.|| |||||.|||||.||.||||
RBAM_024590__ 1178 AAAAAGACGAGGCGTTCCCGGTGCTGCTT--GCCGCGCCGACGGGAAGAG 1225
BSNT_03990___ 1241 CAGCAAAACGGATGAGTGAATCAACGGGACTCCCTGCAGTCACGATACAC 1290
|.||||||||||||||.|||||.|||||.||.||.||.||.|||||||||
RBAM_024590__ 1226 CCGCAAAACGGATGAGCGAATCTACGGGTCTGCCGGCTGTTACGATACAC 1275
BSNT_03990___ 1291 AGGCTGCTTGGCTGGAACGGTGCTGAAGGCTTTACTCATACA--GAGGAT 1338
||||||||.||||||||.||.||||||||.|||| |.|||| ||.|||
RBAM_024590__ 1276 AGGCTGCTCGGCTGGAATGGCGCTGAAGGGTTTA--CCTACAATGAAGAT 1323
BSNT_03990___ 1339 CAGCCGATCGAAGGGAAGCTGTTAATTATCGATGAAGCCAGTATGCTTGA 1388
||||||||.||||||||.|||.|.|||||.||.|||||.||||||||.||
RBAM_024590__ 1324 CAGCCGATAGAAGGGAAACTGATCATTATAGACGAAGCGAGTATGCTCGA 1373
BSNT_03990___ 1389 TATATGGCTGGCGAATCATTTGTTCAAGGCGATCCCTGATCATATACAAA 1438
|||.|||||.||.|..||||||||.||||||.|.|||.|.||.||.||..
RBAM_024590__ 1374 TATCTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGC 1423
BSNT_03990___ 1439 TCATCATTGTCGGAGACGAAGACCAGCTGCCTTCCGTCGGTCCGGGACAA 1488
||||..|.|||||.||.|||||||||||.|||||.||.||.|||||.||.
RBAM_024590__ 1424 TCATTGTCGTCGGTGATGAAGACCAGCTTCCTTCAGTAGGACCGGGGCAG 1473
BSNT_03990___ 1489 GTGCTCAGAGACTTGCTGGCATCCCAGGTGATTCCGACTGTGAGACTGAC 1538
||||||||||||.|..||||.||..||||..|.|||||.|||.|.|||||
RBAM_024590__ 1474 GTGCTCAGAGACCTTTTGGCTTCTGAGGTACTGCCGACCGTGCGCCTGAC 1523
BSNT_03990___ 1539 AGACATCTATCGCCAGGCGGAGGGGTCATCAATCGTCGAGCTTGCCCACC 1588
|||.||.||.||.|||||.||.||.|||||.||.||.||.|||||.||..
RBAM_024590__ 1524 AGATATTTACCGTCAGGCTGAAGGATCATCCATTGTGGAACTTGCGCATG 1573
BSNT_03990___ 1589 AGATGAAAAATGGATTGCTGCCGAA----CAATTTGACTGCCCCGACAAA 1634
|.||||||||.|||.||||.||.|| | ||||.||.||||||||
RBAM_024590__ 1574 ATATGAAAAAAGGACTGCTTCCAAAGGGGC----TGACCGCGCCGACAAA 1619
BSNT_03990___ 1635 GGACCGTTCCTTTATTCGCTG-----CGGCGGGTCGCAAATCAAAGAAGT 1679
||||||.||.|||||.||||| | .||.||.||.||||||||
RBAM_024590__ 1620 GGACCGCTCATTTATCCGCTGTAATTC-----TTCACAGATTAAAGAAGT 1664
BSNT_03990___ 1680 AGTTGAGAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACAGCAAAGG 1729
.||.||..||||.|||.|.||.||.||.|||||.||.|||||..|.|.||
RBAM_024590__ 1665 CGTGGATCAGGTCGTCTCGAACGCGTTAAAAAAGGGGTATACCTCCAGGG 1714
BSNT_03990___ 1730 ACATTCAGGTCCTCGCTCCGATGTACAGAGGAAAAGCCGGCATTAATGAA 1779
|.|||||.||.||.||.|||||||||||.||||||||.||.|||||.||.
RBAM_024590__ 1715 ATATTCAAGTGCTTGCCCCGATGTACAGGGGAAAAGCGGGAATTAACGAG 1764
BSNT_03990___ 1780 TTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACGGAG 1829
.|||||.||.|.||.||.|||||..|.|||||.||.|||||||||.||.|
RBAM_024590__ 1765 CTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCG 1814
BSNT_03990___ 1830 AGAATTGAAGTTCGGGGATGTTGTCTACAGAACCGGAGATAAAATTTTGC 1879
.||..||||.|||||.|||||.||||||||.||.||.||||||||.||.|
RBAM_024590__ 1815 GGAGCTGAAATTCGGTGATGTCGTCTACAGGACGGGCGATAAAATATTAC 1864
BSNT_03990___ 1880 AGCTTGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGATATTGGCGAA 1929
||||||||||.||||||||||||||||||||.|||||.|||||.||||||
RBAM_024590__ 1865 AGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATCGGCGAA 1914
BSNT_03990___ 1930 ATCACGTCGATATTTTATGCAAAGGAAAATACAGAAAAAGAAGACATGGC 1979
|||...||.||.||||||||.||.||||||||.||||||||||||||||.
RBAM_024590__ 1915 ATCGTATCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGT 1964
BSNT_03990___ 1980 CGTCGTTTCTTTTGACGGCAATGAAATGACATTTACGAAAAAAGATTTTA 2029
||||||.||.|||||||||||.|||||.||.|||||||||||.|||||.|
RBAM_024590__ 1965 CGTCGTCTCGTTTGACGGCAACGAAATCACCTTTACGAAAAAGGATTTCA 2014
BSNT_03990___ 2030 ATCAATTTACCCATGCGTATTGCTGTTCTATTCATAAATCGCAGGGAAGT 2079
..||.||||||||.||.||.||||||||.||||||||.|||||||||||.
RBAM_024590__ 2015 GCCAGTTTACCCACGCTTACTGCTGTTCCATTCATAAGTCGCAGGGAAGC 2064
BSNT_03990___ 2080 GAATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTATTATAGAATGCT 2129
|||||.||||||||.||..|||||||.||.||||||||.|||.|||||||
RBAM_024590__ 2065 GAATTCCCGATTGTCGTCCTGCCTGTCGTCAAAGGCTACTATCGAATGCT 2114
BSNT_03990___ 2130 CAGAAGAAACCTTCTTTATACCGCGATTACAAGAGCGAAGAAATTTCTCA 2179
|||.|||||.||.|||||||||||.||.|||||.|||||.||||||||.|
RBAM_024590__ 2115 CAGGAGAAATCTGCTTTATACCGCCATAACAAGGGCGAAAAAATTTCTGA 2164
BSNT_03990___ 2180 TTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTGAAAAATAATGAT 2229
||.|.|||||.|||||.||.|||||.||.||||||||.|||||.||||||
RBAM_024590__ 2165 TTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGAT 2214
BSNT_03990___ 2230 GCAACTGTCAGACAGACCTC-CTTGAAAAACAGGCTGTCCGTACAGGTTG 2278
||.||.|||||||||||.|| ||| |||||||||||..|.|..|||..||
RBAM_024590__ 2215 GCCACCGTCAGACAGACGTCGCTT-AAAAACAGGCTCACAGAGCAGACTG 2263
BSNT_03990___ 2279 AGGAAATGGATGCCGAGCTTGAAGCTTTGCAAAAAGAGCTCCCGTTCAGC 2328
|.||.||||||||.||.||.|..||..|||||||||||||.||||||||.
RBAM_024590__ 2264 AAGAGATGGATGCAGAACTGGCCGCCCTGCAAAAAGAGCTGCCGTTCAGT 2313
BSNT_03990___ 2329 GTACACGACGCCAACATTGGCATGGAAGGCATTACACCATTCGATTTTAT 2378
|||.|.||.||.|||||.||.|||||||||||.||.||.||.||.|||||
RBAM_024590__ 2314 GTATATGATGCGAACATCGGAATGGAAGGCATCACGCCGTTTGACTTTAT 2363
BSNT_03990___ 2379 GAAAGAAGAACAGCAATAA 2397
|.|||||.||..|.||
RBAM_024590__ 2364 GGAAGAAAAAGCGTAA--- 2379
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