Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03968 and RBAM_024430

See Amino acid alignment / Visit BSNT_03968 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:15
# Commandline: needle
#    -asequence dna-align/BSNT_03968___udk.1.9828.seq
#    -bsequence dna-align/RBAM_024430___udk.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03968___udk-RBAM_024430___udk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03968___udk-RBAM_024430___udk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03968___udk
# 2: RBAM_024430___udk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 636
# Identity:     549/636 (86.3%)
# Similarity:   549/636 (86.3%)
# Gaps:           0/636 ( 0.0%)
# Score: 2397.0
# 
#
#=======================================

BSNT_03968___      1 ATGGGTAAGAATCCAGTAGTCATTGGAATCGCAGGAGGTTCCGGTTCAGG     50
                     ||||||||||.|||.|||||.||.||.|||||||||||||||||.|||||
RBAM_024430__      1 ATGGGTAAGAGTCCTGTAGTTATAGGCATCGCAGGAGGTTCCGGATCAGG     50

BSNT_03968___     51 AAAAACGAGTGTCACACGGTCCATTTATGAACAGTTTAAAGGACACTCAA    100
                     ||||||.||.|||||.||.|||||.|||||||||||||||||||||||.|
RBAM_024430__     51 AAAAACAAGCGTCACCCGTTCCATCTATGAACAGTTTAAAGGACACTCGA    100

BSNT_03968___    101 TTTTAATGATCCAGCAGGACCTTTATTATAAAGACCAAAGCCATCTTCCG    150
                     ||||||||||||||||.|||||||||||||||||||||||||||||||||
RBAM_024430__    101 TTTTAATGATCCAGCAAGACCTTTATTATAAAGACCAAAGCCATCTTCCG    150

BSNT_03968___    151 TTTGAAGAAAGGCTGAACACAAACTACGATCATCCGCTTGCGTTTGATAA    200
                     ||||||||||||||||||||||||||.|||||.|||||.||.||||||||
RBAM_024430__    151 TTTGAAGAAAGGCTGAACACAAACTATGATCACCCGCTCGCATTTGATAA    200

BSNT_03968___    201 TGACTATTTAATCGAGCATATTCAGGATCTATTGAATTACCGCCCGATTG    250
                     ||||||||||||||||||||||||.||.||.|||||||||||.|||||.|
RBAM_024430__    201 TGACTATTTAATCGAGCATATTCAAGAGCTTTTGAATTACCGGCCGATAG    250

BSNT_03968___    251 AAAAGCCGATTTATGACTATAAGCTTCACACACGTTCAGAAGAAACGGTT    300
                     ||||||||||||||||.|||||.||.||.||.|||||.||.|||||..||
RBAM_024430__    251 AAAAGCCGATTTATGATTATAAACTGCATACGCGTTCTGAGGAAACCATT    300

BSNT_03968___    301 CACGTAGAGCCAAAGGATGTTATTATCCTTGAAGGCATTCTTGTTCTTGA    350
                     |..||.|||||.||||||||.|||||.||.|||||||||||.|||||.||
RBAM_024430__    301 CCGGTTGAGCCGAAGGATGTCATTATTCTGGAAGGCATTCTCGTTCTCGA    350

BSNT_03968___    351 AGACAAAAGGCTTCGTGATCTGATGGATATCAAGCTTTATGTTGATACGG    400
                     |||.|||||.|||||.||.||.||||||||.||.||||||||.||.||||
RBAM_024430__    351 AGATAAAAGACTTCGCGACCTCATGGATATGAAACTTTATGTCGACACGG    400

BSNT_03968___    401 ACGCTGACTTGCGTATCATCAGACGGATTATGAGAGATATTAATGAGCGC    450
                     ||||.||..|.||||||||||||||||||||||||||||||||.||..|.
RBAM_024430__    401 ACGCGGATCTCCGTATCATCAGACGGATTATGAGAGATATTAACGAAAGA    450

BSNT_03968___    451 GGACGCTCTATTGATTCTGTCATTGAACAATATGTGTCAGTGGTCCGTCC    500
                     ||.|||||.||.||||||||||||||.||.||||||||.||.|||.|.||
RBAM_024430__    451 GGCCGCTCGATCGATTCTGTCATTGAGCAGTATGTGTCCGTCGTCAGACC    500

BSNT_03968___    501 GATGCATAACCAATTCGTCGAGCCGACGAAACGATACGCTGATATTATTA    550
                     ||||||.||.||.||.||.||.|||||||||||.|||||.||.||.||||
RBAM_024430__    501 GATGCACAATCAGTTTGTTGAACCGACGAAACGCTACGCGGACATCATTA    550

BSNT_03968___    551 TCCCGGAAGGCGGTCAGAATCACGTCGCAATTGATCTGATGGTCACAAAA    600
                     |.|||||||||||.||.||.||||||||.|||||||||||||||||.||.
RBAM_024430__    551 TTCCGGAAGGCGGACAAAACCACGTCGCGATTGATCTGATGGTCACGAAG    600

BSNT_03968___    601 ATTCAAACCATTCTTGAACAAAACGCGATTTTGTAA    636
                     ||||||||.||.|||||||||||.||.|||||||||
RBAM_024430__    601 ATTCAAACGATCCTTGAACAAAATGCAATTTTGTAA    636


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