Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03961 and RBAM_024380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:15
# Commandline: needle
# -asequence dna-align/BSNT_03961___yrrT.1.9828.seq
# -bsequence dna-align/RBAM_024380___yrrT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03961___yrrT-RBAM_024380___yrrT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03961___yrrT-RBAM_024380___yrrT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03961___yrrT
# 2: RBAM_024380___yrrT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 672
# Identity: 474/672 (70.5%)
# Similarity: 474/672 (70.5%)
# Gaps: 60/672 ( 8.9%)
# Score: 1579.0
#
#
#=======================================
BSNT_03961___ 1 ATGGGACGTGAATTTATCCCTCTCTTTGAAGATTGGGCAGCAACTTATGA 50
|||||.|||||||||||.|||.|.|||||||||||||||||.||||||||
RBAM_024380__ 1 ATGGGCCGTGAATTTATTCCTTTATTTGAAGATTGGGCAGCGACTTATGA 50
BSNT_03961___ 51 --CCAAACAGTACAAGGTTTAGATATTCAGTATAAAGAAGCGTTCAGAGG 98
|| |||||.||.||....||.|..||.|||...|..|..||.|.|||
RBAM_024380__ 51 TGCC--ACAGTGCACGGGGCTGACAAACAATATGCCGCTGTTTTTAAAGG 98
BSNT_03961___ 99 CTATGATCATATCCTTGATGCCATCGTCAGCA-AATCTGG----AACGCA 143
.|||||..|.||.|||||...|||.||| ||| ..||.|| |||
RBAM_024380__ 99 ATATGACAACATTCTTGACAGCATTGTC-GCACTTTCAGGTTCAAAC--- 144
BSNT_03961___ 144 TGTGTTAGAATTTGGCCCTGGGACAGGGAATTTGACGGC----TAAGCTG 189
||.|||||.||.||.||.||.||.||||||||.||||| |.|||.|
RBAM_024380__ 145 -GTTTTAGAGTTCGGACCGGGAACGGGGAATTTAACGGCGAAATTAGCCG 193
BSNT_03961___ 190 CT-CGATGCAGGCAAAACTGTATTTGGAATCGAACCTTCTCCAGCAATGC 238
|| ||| .|||||..||.|||||..|.|||||.|||||..|||||.
RBAM_024380__ 194 CTGCGA-----ACAAAAAGGTGTTTGGTGTAGAACCGTCTCCGTCAATGA 238
BSNT_03961___ 239 GTAAACTGGCTTCTGACAAGCTTTCAGGCAGGTCGGAAATCGT------T 282
|.||||||||..|||||||||||||.|.|| ||..||| |
RBAM_024380__ 239 GAAAACTGGCGGCTGACAAGCTTTCTGACA------AAGCCGTGTTCAGT 282
BSNT_03961___ 283 GATGGAGACTTCCT-GACATTCCCTGAGCCGCCATTTCAGGCTGATACAA 331
||.|||||.||.|| ||..||||| |..|||||.|||||....|||||.|
RBAM_024380__ 283 GACGGAGATTTTCTGGAGTTTCCC-GCTCCGCCTTTTCAAATAGATACCA 331
BSNT_03961___ 332 TTGTCAGTTCATATGCTTTTCATCATTTGACTGACGAAGAAAAGCG---G 378
|.|||||.||.||.||.|||||||||||.||.||.||||||||||| |
RBAM_024380__ 332 TCGTCAGCTCGTACGCCTTTCATCATTTAACCGATGAAGAAAAGCGAACG 381
BSNT_03961___ 379 GCTGCCATAAAGCAATATGGC-AAATACCTTCACTTGCATGATAAAATAG 427
|||| |||||||.|||||| .||| ||||||...||||||||||||||
RBAM_024380__ 382 GCTG---TAAAGCAGTATGGCGCAAT-CCTTCAGAAGCATGATAAAATAG 427
BSNT_03961___ 428 TGTTTGCCGATACCGTCTTTGAAGATGCGCAAGCGTATCAAAAGGCTATC 477
|||||||||||||.||||||.|||||....||||.|||.|..|.||.||.
RBAM_024380__ 428 TGTTTGCCGATACAGTCTTTAAAGATCATGAAGCTTATGATGAAGCCATT 477
BSNT_03961___ 478 GATAAAGC---CCGTTCTCAA--GGCTTTTATCAGCTTGCAAATGATTTA 522
.|.||||| ||| || ||||.|.||||..|.||..|.||||||
RBAM_024380__ 478 AAAAAAGCAATCCG-----AAACGGCTATCATCAATTAGCGGACGATTTA 522
BSNT_03961___ 523 GAGACAGAGCATTATCCTACATT--GGATGCGTTGAAAGAAATGTTTACA 570
.||||.||.||||||||.|||.| ||| |..|||||.|.||.|||.||
RBAM_024380__ 523 AAGACGGAACATTATCCGACACTCGGGA--CAATGAAAAACATCTTTTCA 570
BSNT_03961___ 571 GCTGAAGGTTTTGCAGTCCGATTCACTCAGCAAAACGACTTCGTGTGGAT 620
|..||.||.|||||.|..||.||.||.||||||||.|||||.||.|||||
RBAM_024380__ 571 GAAGAGGGATTTGCCGCGCGGTTTACGCAGCAAAATGACTTTGTCTGGAT 620
BSNT_03961___ 621 AATGGAGGCGATCAAACGGTAA 642
||||||||||||.|||||||||
RBAM_024380__ 621 AATGGAGGCGATTAAACGGTAA 642
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