Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03959 and RBAM_024370

See Amino acid alignment / Visit BSNT_03959 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:14
# Commandline: needle
#    -asequence dna-align/BSNT_03959___mtn.1.9828.seq
#    -bsequence dna-align/RBAM_024370___mtn.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03959___mtn-RBAM_024370___mtn.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03959___mtn-RBAM_024370___mtn.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03959___mtn
# 2: RBAM_024370___mtn
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 698
# Identity:     562/698 (80.5%)
# Similarity:   562/698 (80.5%)
# Gaps:          28/698 ( 4.0%)
# Score: 2338.0
# 
#
#=======================================

BSNT_03959___      1 ------------------------ATGGAAGAGGAAGTTACCATCTTAAG     26
                                             |||||||||||||||||.||.|||||
RBAM_024370__      1 ATGAAACTGGCAGTCATCGGAGCAATGGAAGAGGAAGTTACGATTTTAAG     50

BSNT_03959___     27 AGACAAACTTGAAA-ATGCAAAAACAGAAACGATCGCACACTGTGAATTT     75
                     |..||||| ||||| |.||||||..|||.|.||||||.||||||||.|||
RBAM_024370__     51 AAGCAAAC-TGAAAGACGCAAAACAAGAGATGATCGCTCACTGTGAGTTT     99

BSNT_03959___     76 ACAACAGGCGAATATGAAGGAACTGAAGTGATTCTT-TTAAAATCAGGAA    124
                     |||||.|||...||||||||....|||||.| |||| .|.||||||||.|
RBAM_024370__    100 ACAACTGGCAGCTATGAAGGCGTCGAAGTCA-TCTTGCTGAAATCAGGTA    148

BSNT_03959___    125 TTGGAAAAGTAAATGCTGCTATCAGCACGACGCTTCTGCTTGACCGTTAC    174
                     |.||.|||||.||.||.||.||||||||||||||||||||||||||||.|
RBAM_024370__    149 TCGGGAAAGTCAACGCGGCGATCAGCACGACGCTTCTGCTTGACCGTTTC    198

BSNT_03959___    175 AAGCCTGATTATGTCATTAACACAGGCTCAGCCGGCGGATTTCATCATAC    224
                     ||.|||||||||||.|||||||||||||||||.|||||.|||||||||||
RBAM_024370__    199 AAACCTGATTATGTGATTAACACAGGCTCAGCGGGCGGTTTTCATCATAC    248

BSNT_03959___    225 ATTGAATGTAGGGGATGTCGTCATTTCCACTGACGTTCGCCACCATGATG    274
                     ||||||||||||.||.||||||||.||.||.||.||.|||||.|||||.|
RBAM_024370__    249 ATTGAATGTAGGCGACGTCGTCATCTCAACAGATGTCCGCCATCATGACG    298

BSNT_03959___    275 TAGACGTAACGGCTTTTGACTATGAATACGGCCAAGTGCCGGGTCTTCCG    324
                     |.||.||.|||||.|||||||||||||||||.||.|||||||||||||||
RBAM_024370__    299 TGGATGTGACGGCGTTTGACTATGAATACGGACAGGTGCCGGGTCTTCCG    348

BSNT_03959___    325 GCTGCTTATGCGGCGGATGAAAAGCTGATCAGCATCACTGAAGAAGCGGT    374
                     ||.||.||....||.|||||||||||||||||.||.|||||.||||||||
RBAM_024370__    349 GCAGCATACAAAGCTGATGAAAAGCTGATCAGTATTACTGAGGAAGCGGT    398

BSNT_03959___    375 ATCTGAACTCGACGGCATTCAGGTTGCAAAAGGAACGATTGCAACAGGCG    424
                     .||||||||..||||||||||.||.||.|||||.||.||.|||||.||.|
RBAM_024370__    399 TTCTGAACTTAACGGCATTCAAGTCGCCAAAGGCACAATCGCAACGGGAG    448

BSNT_03959___    425 ATTCTTTCATGAACGATCCGAAGCGGGTTGAAGAGGTGCGTGCGAGATTT    474
                     |||||||.|||||.||||||||||||||||||||.||.||.||.|.||||
RBAM_024370__    449 ATTCTTTTATGAATGATCCGAAGCGGGTTGAAGACGTACGCGCCAAATTT    498

BSNT_03959___    475 TCTGATCTGTACGCGGTTGAAATGGAGGCTGCGGCAGTGGCTCAAGTGTG    524
                     .|.|||.|||||||||||||||||||.||||||||.||.||.||.|||||
RBAM_024370__    499 GCGGATTTGTACGCGGTTGAAATGGAAGCTGCGGCTGTCGCACAGGTGTG    548

BSNT_03959___    525 CCATCAATTTAAAACGCCGTTTGTCGTCATCAGAGCATTATCTGATATTG    574
                     |||.||.||.||||||||.|||||.|||||||||||.|||||||||||||
RBAM_024370__    549 CCACCAGTTCAAAACGCCTTTTGTTGTCATCAGAGCTTTATCTGATATTG    598

BSNT_03959___    575 CAGGAAAAGAATCACATGTTTCATTTGACCAATTTTTAGAGCAGGCGGCT    624
                     |.|||||||||||..|.|||||||||||..||||||||||.|||||.||.
RBAM_024370__    599 CCGGAAAAGAATCTGACGTTTCATTTGATAAATTTTTAGAACAGGCTGCC    648

BSNT_03959___    625 GTCCATTCAACAGAGCTTGTGTTAAAGGTGATCAAACGAATTCATTAA    672
                     ||.||||||||.||||||||..|.||.||.||||||||||||||.|||
RBAM_024370__    649 GTTCATTCAACTGAGCTTGTCCTGAATGTCATCAAACGAATTCACTAA    696


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