Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03957 and RBAM_024350
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:14
# Commandline: needle
# -asequence dna-align/BSNT_03957___yrhB.1.9828.seq
# -bsequence dna-align/RBAM_024350___yrhB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03957___yrhB-RBAM_024350___yrhB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03957___yrhB-RBAM_024350___yrhB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03957___yrhB
# 2: RBAM_024350___yrhB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1164
# Identity: 883/1164 (75.9%)
# Similarity: 883/1164 (75.9%)
# Gaps: 45/1164 ( 3.9%)
# Score: 3296.5
#
#
#=======================================
BSNT_03957___ 1 ATGAAGAAAAAAACTTTGATGATACATGGCGGAATCACAGGTGATGAGAA 50
||||||||||||||..|||||.|.||.||.|||||.||.||.|||||.||
RBAM_024350__ 1 ATGAAGAAAAAAACGCTGATGGTGCACGGAGGAATTACGGGAGATGAAAA 50
BSNT_03957___ 51 AACAGGCGCAGTTTCCGTGCCCATTTATCAAGTAAGCACGTACAAGCAGC 100
||||||.||.||||||||.||.|||||||||||||||||||||.|.||||
RBAM_024350__ 51 AACAGGAGCGGTTTCCGTACCGATTTATCAAGTAAGCACGTACCAACAGC 100
BSNT_03957___ 101 CGAAAGCAGGACAGCATACAGGCTACGAGTATTCAAGAACGGCCAATCCG 150
|||||||.||..|||||||.||.||.||.|||||||||||||||||||||
RBAM_024350__ 101 CGAAAGCGGGCGAGCATACGGGTTATGAATATTCAAGAACGGCCAATCCG 150
BSNT_03957___ 151 ACTCGAACCGCTCTCG-AAGC--ACTTGTGACAGAACTGGAAAGCGGGGA 197
||.||.||.||.||.| |||| |.||| |.||.||.|||.||||.|.
RBAM_024350__ 151 ACGCGCACGGCGCTTGAAAGCTTAATTG---CGGAGCTTGAAGGCGGCGC 197
BSNT_03957___ 198 AGCAGGTTATGCGTTCAGTTCGGGAATGGCTGCCATTACAGCAGTTATGA 247
.||.||.|||||||||.|.||.||.||||||||.|||||.||.||.||||
RBAM_024350__ 198 GGCGGGATATGCGTTCGGCTCAGGCATGGCTGCGATTACTGCCGTCATGA 247
BSNT_03957___ 248 TGCTGTTTAACAGCGGAGATCATGTCGTGTTGACTGATGATGTGTACGGC 297
||||||||.|||||||.||||||||..|.|||||.||||||||.||||||
RBAM_024350__ 248 TGCTGTTTGACAGCGGCGATCATGTTATTTTGACGGATGATGTATACGGC 297
BSNT_03957___ 298 GGAACATATCGCGTGATGACAAAGGTGCTTAACCGTCTT-GGCATTGAAT 346
||.||.||.||.|||||||||...|||||.||||| ||| |||||||||.
RBAM_024350__ 298 GGCACTTACCGGGTGATGACAGGCGTGCTGAACCG-CTTCGGCATTGAAG 346
BSNT_03957___ 347 C-AACATTTGTTGATACGAGCAGCAGGGAAGAAGTTGAAAAAGCGATTCG 395
| .|| |||||.|||||||||||||..|||.||||..|||||||.|||||
RBAM_024350__ 347 CGGAC-TTTGTCGATACGAGCAGCAAAGAAAAAGTCCAAAAAGCCATTCG 395
BSNT_03957___ 396 CCCTAATACAAAAGCCATTTATATTGAAACACTGACAAATCCGTTGCTCA 445
|||.|||||.||||||||||||||.|||||||.||||||.|||.|..|.|
RBAM_024350__ 396 CCCGAATACGAAAGCCATTTATATCGAAACACCGACAAACCCGCTATTGA 445
BSNT_03957___ 446 AAATCACCGACTTGACGCTCATGGCTGATATCGCAAAAAAAGCGGGTGTT 495
||.|.||.|||.|.|..||.|||.||||.|||||||||.||||||||||.
RBAM_024350__ 446 AAGTGACTGACCTCAAACTGATGTCTGACATCGCAAAAGAAGCGGGTGTA 495
BSNT_03957___ 496 CTGCTTATCGTAGACAACACCTTTAATACTCCTTATTTTCAGCAACCGCT 545
.||||||||||.||.||.||.|||.|.||.||.|||||.||.||.|||||
RBAM_024350__ 496 TTGCTTATCGTCGATAATACGTTTTACACGCCGTATTTCCAACAGCCGCT 545
BSNT_03957___ 546 TACTTTAGGCGCTGATATCGTACTTCACAGTGCGACAAAATATCTTGGCG 595
.|..||.||.||.||.|||||.||||||||.||||||||||||||.||||
RBAM_024350__ 546 GAGCTTCGGAGCGGACATCGTGCTTCACAGCGCGACAAAATATCTCGGCG 595
BSNT_03957___ 596 GACACAGTGATGTCGTCGGAGGTTTAGTTGTGACAGCTTCGAAAGAGCTT 645
|.|||||||||||||||||.||.|||||.||.||.|||...|||||.||.
RBAM_024350__ 596 GCCACAGTGATGTCGTCGGCGGCTTAGTCGTTACGGCTGATAAAGAACTG 645
BSNT_03957___ 646 GGAGAAGAGCTGCATTTTGTGCAAAACTCCACAGGCGGCGTGCTCGGCCC 695
||.|||.||||.||||.||||||||||||.||.||||||||..|.||.||
RBAM_024350__ 646 GGCGAAAAGCTTCATTATGTGCAAAACTCAACGGGCGGCGTTTTAGGACC 695
BSNT_03957___ 696 TCAAGATTCCTGGCTGTTAATGAGAGGAATCAAAACGTTGGGACTCAGAA 745
.||.|||||.|||||.||.||||||||.||.||||||.||||||||||||
RBAM_024350__ 696 GCAGGATTCATGGCTTTTGATGAGAGGCATTAAAACGCTGGGACTCAGAA 745
BSNT_03957___ 746 TGGAAGCGATCGATCAAAATGCGC--GGAAAATCGCAAGCTTTCTTGA-- 791
||||.||.|||.||.|.| |||| |.||||||||..|..|.|||||
RBAM_024350__ 746 TGGATGCCATCAATTACA--GCGCCGGAAAAATCGCCGGGCTGCTTGAAG 793
BSNT_03957___ 792 -GAATCACCCTGCTGTCCAAACGTTATATTACCCTGGTTCTTCAAATCAT 840
|.||.| |||.||.||.|||.|.||.||.||.||.||..|.||.||.
RBAM_024350__ 794 CGCATGA---TGCCGTTCAGACGCTCTACTATCCCGGATCAGCGAAACAC 840
BSNT_03957___ 841 CCCGGACATGAGCTTGCAAAAACGCAAGGATCGGGCTTTGGCGGCATGAT 890
||.||.||||||||..|||||.|||||.|.||.||.||.|||||.|||||
RBAM_024350__ 841 CCGGGCCATGAGCTGACAAAAGCGCAAAGCTCCGGTTTCGGCGGAATGAT 890
BSNT_03957___ 891 CTCCTTTGATATTGGCAGTGAAGAACGGGTTGATGCGTTTTTAGGAAATC 940
.|||||||||.|.|||||....|||||.||.||.||||||||||.|||..
RBAM_024350__ 891 TTCCTTTGATGTCGGCAGCAGCGAACGCGTCGACGCGTTTTTAGAAAAAT 940
BSNT_03957___ 941 TGAAACTGTTTACCATTGCTGAAAGCCTGGGGGCGGTTGAAAGCTTAATT 990
||||.||||||||.||.||.|||||..|.||.|||||||||||||||||.
RBAM_024350__ 941 TGAACCTGTTTACGATCGCGGAAAGTTTAGGAGCGGTTGAAAGCTTAATC 990
BSNT_03957___ 991 TCTGTTCCTGCAAGAATGACACATGCCTCTATTCCGAGAGAACGCCGGCT 1040
||.||.||..|.||||||||.||.||.||.||.|||.|.||.||||||||
RBAM_024350__ 991 TCCGTGCCGTCCAGAATGACGCACGCATCGATCCCGCGCGACCGCCGGCT 1040
BSNT_03957___ 1041 TGAGCTCGGCATTACGGAC-GGCTTGATCAGAATTTCTGTAGGAATTGAA 1089
||.|||.||||||||.||| ||||.| |..|.||.||.||.||.|||||.
RBAM_024350__ 1041 TGCGCTTGGCATTACCGACGGGCTCG-TGCGGATCTCAGTCGGTATTGAG 1089
BSNT_03957___ 1090 GATGCGGAAGACTTGTTGGAAGATATCGGC----------CAAGCGCTTG 1129
|||.|.||.||.| ||.|||| ||.|||||||
RBAM_024350__ 1090 GATACTGAGGATT----------TAACGGCGGATGTGAAACAGGCGCTTG 1129
BSNT_03957___ 1130 A---AAATATATAA 1140
| |..|.|||||
RBAM_024350__ 1130 ATTCACTTTTATAA 1143
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