Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03946 and RBAM_024300

See Amino acid alignment / Visit BSNT_03946 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:13
# Commandline: needle
#    -asequence dna-align/BSNT_03946___yrhG.1.9828.seq
#    -bsequence dna-align/RBAM_024300___yrhG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03946___yrhG-RBAM_024300___yrhG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03946___yrhG-RBAM_024300___yrhG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03946___yrhG
# 2: RBAM_024300___yrhG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 830
# Identity:     617/830 (74.3%)
# Similarity:   617/830 (74.3%)
# Gaps:          58/830 ( 7.0%)
# Score: 2303.0
# 
#
#=======================================

BSNT_03946___      1 ATGGCTTTTCGAAAACCGGATGAAATAGCGGAAGC-AGCAATTGAAGCAG     49
                     |||||||||||.||||||||.|||||||||| ||| .||..|.|||.|||
RBAM_024300__      1 ATGGCTTTTCGTAAACCGGACGAAATAGCGG-AGCTTGCGGTCGAATCAG     49

BSNT_03946___     50 GGATGAAAAAAATAAAGCTCCCGTTGCCGTCACTGCTT---GCGCTG---     93
                     ||.|.|||||            |.|||..||||.||||   ||.|||   
RBAM_024300__     50 GGGTAAAAAA------------GGTGCATTCACCGCTTTCAGCACTGATT     87

BSNT_03946___     94 ------GGGTTTTTAGGCGGTGCATTTATTGCGCTTGGGTATTTGCTTGA    137
                           ||.|||||.||.||.||.|||||.||.||.||.|||||||||||
RBAM_024300__     88 GTATTAGGATTTTTGGGAGGAGCGTTTATCGCACTCGGTTATTTGCTTGA    137

BSNT_03946___    138 TATCAGGGTAATCGGCGATCTTCCGAAAGAATGGGGGAGCCTGTCCAGTT    187
                     ||||.|.||.||||||||.|||||||||||||||||.||||||||.||||
RBAM_024300__    138 TATCCGTGTCATCGGCGACCTTCCGAAAGAATGGGGAAGCCTGTCGAGTT    187

BSNT_03946___    188 TGATTGGTGCAGCAGTATTTCCCGTCGGTCTGATCCTTGTCGTTCTCGCT    237
                     |.||.||.||..|.||.||||||.||||..||.|.||.||||||||.||.
RBAM_024300__    188 TAATCGGGGCGTCCGTGTTTCCCATCGGATTGGTGCTCGTCGTTCTTGCC    237

BSNT_03946___    238 GGCGCTGAACTGATCACAGGCAATATGATGTCAGTTGCGATGGCGTTATT    287
                     |||||.||.|||||.||.||.|||||||||||.||..|.||||||.|.||
RBAM_024300__    238 GGCGCGGAGCTGATTACGGGAAATATGATGTCGGTATCCATGGCGCTGTT    287

BSNT_03946___    288 TTCGAGAAAAATAT----CAGTAAAAGAGTTAGCGATTAACTGGGGAATC    333
                     |||.||||.|||||    |.||    |..||||.||..||.||||..|||
RBAM_024300__    288 TTCCAGAAGAATATCCGCCGGT----GCATTAGTGAAAAATTGGGTGATC    333

BSNT_03946___    334 GTCACAATTATGAA-CTTAATCGGCGCATTGTTTGTTGCGTACTTTTTCG    382
                     ||.||..|.||||| ||| .||||||||.|||||||.||.||||||||||
RBAM_024300__    334 GTGACGTTGATGAATCTT-GTCGGCGCACTGTTTGTCGCTTACTTTTTCG    382

BSNT_03946___    383 GGCATTTGGTTGGATTGACTGAAACAGGTCCTTATTTAGAAAAAACGATT    432
                     |.|||.|.||.|||||.||.||||||||.|||||.||.||||||||||||
RBAM_024300__    383 GACATGTTGTCGGATTAACCGAAACAGGACCTTACTTGGAAAAAACGATT    432

BSNT_03946___    433 GCCGTTGCCCAAGGAAAGCTTGATATGAGCTTTGGCAAGGTTCTCATTTC    482
                     ||.||.||.|||||.||..|.||||||...|||||.||.||..|..||||
RBAM_024300__    433 GCGGTCGCACAAGGCAAATTGGATATGCCGTTTGGAAAAGTCATTGTTTC    482

BSNT_03946___    483 CGCCATCGGCTGTAACTGGCTTGTATGTCTTGCAGTGTGGCTTTCTTTCG    532
                     .||.||||||||||||||||||||.|||.|.||.||.|||||||||||||
RBAM_024300__    483 GGCGATCGGCTGTAACTGGCTTGTCTGTTTGGCCGTCTGGCTTTCTTTCG    532

BSNT_03946___    533 GCGCCCAAGACGCAGCAGGAAAAATCCTTGGCATCTGGTTCCCAACCATG    582
                     ||||..||||||.|||.|||||||||...||.||.|||||.||.|..|||
RBAM_024300__    533 GCGCAGAAGACGGAGCCGGAAAAATCGCGGGTATATGGTTTCCGATTATG    582

BSNT_03946___    583 GCTTTTGTGGCTATCGGATTTCAGCACGTTGTCGCCAACATGTTTGTGAT    632
                     ||.|||||.||.||.||.||||||||||||||.|||||.||||||.|.||
RBAM_024300__    583 GCGTTTGTCGCAATTGGTTTTCAGCACGTTGTAGCCAATATGTTTATCAT    632

BSNT_03946___    633 TCCTGCTGCCATTTTTGCAGGCTCATTCACGTGGGGGCAGTTCATCGGAA    682
                     .||.|||||.||.|||||||||||.||..|||||||..|..|.||.||.|
RBAM_024300__    633 CCCGGCTGCGATATTTGCAGGCTCTTTTTCGTGGGGTGATCTGATTGGCA    682

BSNT_03946___    683 ACATCATTCCGGCTTTTATCGGTAATGTCATCGGCGGAGCTGTATTTGTC    732
                     |..||||||||||.||||||||.||||||||||||||.||.||.||||||
RBAM_024300__    683 ATCTCATTCCGGCCTTTATCGGGAATGTCATCGGCGGGGCAGTGTTTGTC    732

BSNT_03946___    733 GGTCTCATTTATTTTATTGCATA-TCATAAGAAAGACCGCTCCAGAAAA-    780
                     |||||.||||||||||||||||| ||| ||.|||||     .||||||| 
RBAM_024300__    733 GGTCTTATTTATTTTATTGCATATTCA-AAAAAAGA-----TCAGAAAAA    776

BSNT_03946___    781 ---------GAAATGAAGCAGGTGTCATGA    801
                              ||||.||     ||.||.|||
RBAM_024300__    777 GCAAGGGATGAAAAGA-----GTTTCCTGA    801


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