Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02054 and RBAM_024010
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:45
# Commandline: needle
# -asequence dna-align/BSNT_02054___yjeA.1.9828.seq
# -bsequence dna-align/RBAM_024010.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02054___yjeA-RBAM_024010.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02054___yjeA-RBAM_024010.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02054___yjeA
# 2: RBAM_024010
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1544
# Identity: 450/1544 (29.1%)
# Similarity: 450/1544 (29.1%)
# Gaps: 949/1544 (61.5%)
# Score: 807.0
#
#
#=======================================
BSNT_02054___ 1 TTGTTGGCAAAAAGAATCAAATGGTTTCATGTATTAATAGCAGTTGTATG 50
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 51 TGTGGTGGGCCTTATCGGCTTTTTCCATAATCATTCATTGAAAAAAGAAA 100
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 101 CGGTCATGAATAAAGTAAGAACTGATTCTCAATATGGGAATGTTGAGATC 150
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 151 GCAACGCTTGTGCATGACGGGAAAACTTTTAATTACGCGGTTAACTATCC 200
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 201 CGTTTTCAAAAATGAAAAAATGGATTCGGCATTAAAAAGATTCGCAGAAA 250
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 251 AAGAGGTTCGTCAATTTCAAAAGGAAACAAAAGACGTTGACCAAGAGCAT 300
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 301 ACGACAAAACGCAACGAATTAAATGTTGATTATAAAATTGTCCATTATGC 350
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 351 CAAACAGACAGTGGCGATTGTATTTAATGAATATAAATACATCGGCGGGG 400
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 401 CACACGGGCAAACCGTGAAAAAAACGTTTAACTATGATTTTAGTAAACAA 450
RBAM_024010 0 -------------------------------------------------- 0
BSNT_02054___ 451 GCGTTTCTTTCCATTGATGATATTTTCAAAGAGGACGCTGA-CTACATAC 499
|||| ||||.||||| .|||| |..||| .
RBAM_024010 1 -------------TTGA-GATACTTTCA--------TCTGATCATCAT-G 27
BSNT_02054___ 500 ATAAGCTTTCGTTAATCGCTTATCACGAG-CTGAAAAAGAATAAGGACAT 548
|||.||.|.| ||||||| || ||.
RBAM_024010 28 ATATGCGTCC------------TCACGAGTCT---------------CAC 50
BSNT_02054___ 549 TGCCG---CGGACGATGCG----CTGTTAAAGGAAGGGACGGCTCCGAAA 591
||||| |.|.||||||| ||.|.|||.||||.||| |.
RBAM_024010 51 TGCCGTGTCCGCCGATGCGAAATCTTTAAAAAGAAGTGAC--------AT 92
BSNT_02054___ 592 GTAGAAAATTTCAGCCGCTTTGCCATCAAGGAGGATTATATCGAAC-TTT 640
|.||| ||.|| ||| ||| |.|
RBAM_024010 93 GGAGA-------AGACG---------------GGA--------AACGTGT 112
BSNT_02054___ 641 ACTTTGACACATATCAGGTTGCAGCAGGCTATCTTGGAGAGCAATCGATT 690
|||..| ||||.|||
RBAM_024010 113 ACTGGG----ATATAAGG-------------------------------- 126
BSNT_02054___ 691 GCCATTAAGAAAAGTCTTTTGAAAGACATTCTGAAAGAACAATATATTGA 740
||||||
RBAM_024010 127 -----------------------------TCTGAA--------------- 132
BSNT_02054___ 741 TAAAGCAAAAAATAAAAATAAAATCAAAGAACAAAAGCCGAAGCATGAAG 790
|||||.|||
RBAM_024010 133 -------------AAAAAGAAA---------------------------- 141
BSNT_02054___ 791 TGATTTCTTTACCCAAAGAGGAAACGGTTGATCCAAATCAAAAAGTCATT 840
.|.||||||
RBAM_024010 142 --CTATCTTTA--------------------------------------- 150
BSNT_02054___ 841 GCGCTTACTTTCGACGATGGCCCGAATCCTG-CGACAACAAATCAGA--- 886
||.|||||.||.|||||..|||||| |.|.| |.||
RBAM_024010 151 ------ACCTTCGATGACGGCCCCCATCCTGTCTATA------CGGAGGC 188
BSNT_02054___ 887 --TTCTAGACTCCTTGAAGAAATATAAGGGTCATGCCACGTTTTTTGTTT 934
|..|||||...|||||..|..|.||.|.|.|.||.||.||||||..|.
RBAM_024010 189 TGTGTTAGACGTGTTGAAACAGCACAATGTTAAAGCAACCTTTTTTTGTG 238
BSNT_02054___ 935 TGGGGAGCAGGGTTCAATAT-------TATCCGGAAACGCTAATAAGAAT 977
|.||||||.| ||| ||.||...||||..||.|.|.||
RBAM_024010 239 TCGGGAGCCG-------TATAGACAAATACCCCATAACGGCAAAACGCAT 281
BSNT_02054___ 978 -GCTGAAAGAAGGAAATGAGGTGGGGAACCATTC-ATGGAGCCATCCGCT 1025
|.|| |||||||..||||..|.||.||||||.| || ||.|||| |.|
RBAM_024010 282 CGTTG-AAGAAGGGCATGAAATCGGCAACCATACGAT-GAACCAT--GTT 327
BSNT_02054___ 1026 TCTCACAAGGCTTTCAGTG----------AAAGAAGCTTTA-AAG----- 1059
|.| |||||..| |||||.|.|||| |||
RBAM_024010 328 TAT--------TTTCACCGACTGAAACGCAAAGACGTTTTACAAGAGCTT 369
BSNT_02054___ 1060 --CAGATCA----ATGATA-CGCAAGACATCATTGAAAAAATAAGCGGA- 1101
|||.||| ||.||| | |||||..||.|.....|||.|||
RBAM_024010 370 CACAGCTCAGCGCATCATATC-----ACATCGCTGCAGCCGGAAGGGGAC 414
BSNT_02054___ 1102 ----TAT--CGTCCGACGCTTGTAAGACCCC-----CATACGGC------ 1134
||| ||.|||.|| |.|.|..|.| ||||||||
RBAM_024010 415 AAGTTATTCCGCCCGCCG---GGAGGGTCGCTGAATCATACGGCTTTCAA 461
BSNT_02054___ 1135 -GGCA--TTAATGATGAACTGCGGAG-----TCAAATGAAAATGGATGTT 1176
.||| |||| || ||| |||.||.|..||| |
RBAM_024010 462 AAGCATCTTAA-----AA-----GAGGGCTATCATATCATCATG-----T 496
BSNT_02054___ 1177 GCGTTATGGGATGTTGACCCGGAAGATTGGAAA--GACC--GTAACAAAA 1222
| ||.||||.|....||.|||...||.|||||| |.|| |.||..|||
RBAM_024010 497 G-GTCATGGAACCAAGATCCGAGGGACTGGAAAAGGCCCGGGAAAGGAAA 545
BSNT_02054___ 1223 AA---------ACAATTGTTGACCGTGTCATGAATCAGGCGGGAGATGGA 1263
|| || ||| ||.||| ||.||..||||||||
RBAM_024010 546 AATCGTCAGGCAC----GTT----GTTTCA-----CATGCCAGAGATGGA 582
BSNT_02054___ 1264 AGAACCATTTTGATTCACGATATTTACCGCACCTCTGCTGATG-CGGCCG 1312
||||| ||..|.||||| ||| ||||.|
RBAM_024010 583 ------------------GATAT----CGTTCTTCTGC--ATGACGGCGG 608
BSNT_02054___ 1313 ATGAAA---------------------TTATAAAA------------AAG 1329
|.|||| || |.||| |||
RBAM_024010 609 AGGAAACCGGCGCCAGACGGTTGAGGCTT-TGAAAGAAATCATTCCCAAG 657
BSNT_02054___ 1330 CTCACCGATCAAGGCTATCA-ATTGGTGACAGTTTCTCAGCTTGA----A 1374
||.|...|.||.||||| || .||.||.|..|||||..| .|||| |
RBAM_024010 658 CTGAAAAAGCAGGGCTA-CACGTTTGTTAAGGTTTCGGA-TTTGATCGGA 705
BSNT_02054___ 1375 GAGG------------TTAAAAAACA--AAGAGAAGCGAAATAA 1404
.||| ||.|.|..|| ||
RBAM_024010 706 CAGGATTCCGGCCCTTTTCATATCCAGTAA-------------- 735
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