Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03820 and RBAM_023980

See Amino acid alignment / Visit BSNT_03820 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:09
# Commandline: needle
#    -asequence dna-align/BSNT_03820___yqeG.1.9828.seq
#    -bsequence dna-align/RBAM_023980___yqeG.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03820___yqeG-RBAM_023980___yqeG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03820___yqeG-RBAM_023980___yqeG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03820___yqeG
# 2: RBAM_023980___yqeG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 519
# Identity:     437/519 (84.2%)
# Similarity:   437/519 (84.2%)
# Gaps:           0/519 ( 0.0%)
# Score: 1857.0
# 
#
#=======================================

BSNT_03820___      1 TTGTTAAAAAAGTTTTTTTTACCTGACGAGTTTGTAAAAAATATTTTTCA     50
                     |||||||||||||||||||||||||||||.|||||.||||||||.|||||
RBAM_023980__      1 TTGTTAAAAAAGTTTTTTTTACCTGACGAATTTGTGAAAAATATATTTCA     50

BSNT_03820___     51 TATTACACCTGAGAAATTAAAGGAACGAAATGTAAAAGGGATTATTACTG    100
                     |||.|||||.||.||..|.||.|||||.|||||.||||||||||||||.|
RBAM_023980__     51 TATCACACCGGAAAAGCTCAAAGAACGCAATGTGAAAGGGATTATTACAG    100

BSNT_03820___    101 ACCTGGATAATACGCTTGTTGAATGGGACAGACCGAATGCGACGCCGCGA    150
                     ||||.||.||.||||||||.||.|||||||||||||.||||||.||.|||
RBAM_023980__    101 ACCTTGACAACACGCTTGTGGAGTGGGACAGACCGAGTGCGACACCTCGA    150

BSNT_03820___    151 TTGATCGAGTGGTTTGAAGAAATGAAGGAACACGGCATTAAAGTGACAAT    200
                     ||.|||||.||||||||||||||||||||.||||||||||||||.||.||
RBAM_023980__    151 TTAATCGAATGGTTTGAAGAAATGAAGGAGCACGGCATTAAAGTCACGAT    200

BSNT_03820___    201 TGTCTCTAATAATAACGAAAGAAGAGTGAAACTTTTCTCAGAACCGCTTG    250
                     .|||||.||||||||.|||.|||||||||||.|.|||||.||.|||||||
RBAM_023980__    201 CGTCTCCAATAATAATGAACGAAGAGTGAAATTATTCTCGGAGCCGCTTG    250

BSNT_03820___    251 GAATCCCATTCATCTATAAAGCAAGAAAACCGATGGGTAAAGCCTTTAAT    300
                     |.||.||.||.||.|||||.|||||||||||||||||....||||||||.
RBAM_023980__    251 GCATACCGTTTATTTATAAGGCAAGAAAACCGATGGGACGCGCCTTTAAA    300

BSNT_03820___    301 AGAGCGGTGCGCAATATGGAGCTGAAAAAAGAGGACTGCGTTGTCATCGG    350
                     |||||.||..|||..|||||.|||||||||||.|||||.||.||||||||
RBAM_023980__    301 AGAGCCGTCAGCAGCATGGATCTGAAAAAAGAAGACTGTGTGGTCATCGG    350

BSNT_03820___    351 AGACCAGCTGCTGACCGATGTACTCGGGGGAAACCGAAACGGCTACCATA    400
                     .||.||||||||.||.|||||.|||||.||||||.|||||||.||.||||
RBAM_023980__    351 CGATCAGCTGCTTACTGATGTTCTCGGCGGAAACAGAAACGGGTATCATA    400

BSNT_03820___    401 CGATTTTGGTCGTGCCAGTCGCTTCCTCTGACGGATTCATTACGCGCTTT    450
                     ||||..|.||||||||.||||||||||||||||||.||||.|||||||||
RBAM_023980__    401 CGATCCTCGTCGTGCCTGTCGCTTCCTCTGACGGAGTCATGACGCGCTTT    450

BSNT_03820___    451 AACCGCCAGGTCGAACGCAGAATACTGAGTGCTCTCAAACGAAAAGGGCA    500
                     |||||||.|.|.|||||.||||||.|||||.||.|.|||||.|||||.||
RBAM_023980__    451 AACCGCCGGATTGAACGGAGAATATTGAGTTCTTTGAAACGTAAAGGCCA    500

BSNT_03820___    501 CATTCAGTGGGAGGAGTAA    519
                     .||||||||||||||.||.
RBAM_023980__    501 TATTCAGTGGGAGGATTAG    519


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.