Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03819 and RBAM_023970
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:09
# Commandline: needle
# -asequence dna-align/BSNT_03819___yqeH.1.9828.seq
# -bsequence dna-align/RBAM_023970___yqeH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03819___yqeH-RBAM_023970___yqeH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03819___yqeH-RBAM_023970___yqeH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03819___yqeH
# 2: RBAM_023970___yqeH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1117
# Identity: 868/1117 (77.7%)
# Similarity: 868/1117 (77.7%)
# Gaps: 32/1117 ( 2.9%)
# Score: 3332.5
#
#
#=======================================
BSNT_03819___ 1 ATGGAAAAGGTTGTTTGTATCGGGTGCGGAGTTACGATCCAAACCGAGGA 50
|||||||||||||||||.|||||.||||||||.||||||||.||||||||
RBAM_023970__ 1 ATGGAAAAGGTTGTTTGCATCGGCTGCGGAGTAACGATCCAGACCGAGGA 50
BSNT_03819___ 51 CAAAACAGGTTTGGGGTACGCGCCGCCTGCATCGCTTACGAAAGAAAATG 100
.|||..||||.|.||.||||||||....||||||||.||||||||.||||
RBAM_023970__ 51 TAAACAAGGTCTCGGATACGCGCCAAAGGCATCGCTCACGAAAGAGAATG 100
BSNT_03819___ 101 TGATTTGCCAGCGTTGCTTCAGACTGAAAAACTATAATGAAATACAAGAT 150
|.||.||||||||.|||||||||||||||||.||.||||||||.||||||
RBAM_023970__ 101 TCATCTGCCAGCGCTGCTTCAGACTGAAAAATTACAATGAAATTCAAGAT 150
BSNT_03819___ 151 GTCTCCTTAACTGATGATGATTTTTTGAACATTCTT-CACGGTATTGGAG 199
||.||.|||||.||||||||.|||||.||.| |||| |||...||.||.|
RBAM_023970__ 151 GTTTCATTAACGGATGATGACTTTTTAAATA-TCTTGCACACAATCGGCG 199
BSNT_03819___ 200 AAACGGACTCTCTTGTCGTAAAAATTGTTGATATTTTTGATTTTAACGGC 249
|.||.|||||||||.|.||.|||.|.|||||||||||||||||||||||.
RBAM_023970__ 200 ATACTGACTCTCTTATTGTCAAAGTCGTTGATATTTTTGATTTTAACGGA 249
BSNT_03819___ 250 AGCTGGATTAATGGGCTGCAGCGCTTGGTGGGGGGAAACCCTATC-TTAT 298
||||||||.||.||||||.|.|||||.||.||.||.||.||.||| ||.|
RBAM_023970__ 250 AGCTGGATAAACGGGCTGAACCGCTTTGTCGGCGGTAATCCGATCATTCT 299
BSNT_03819___ 299 TAGTTGGCAATAAAGCGGATATTTTGCCTAAGTCACTGAAAAGAGAGCGT 348
| ||.||.|||||.||.|||||..||||.||.||..|.|||.|.||.||.
RBAM_023970__ 300 T-GTCGGTAATAAGGCCGATATCCTGCCGAAATCCGTAAAACGGGAACGG 348
BSNT_03819___ 349 CTGATCCAATGGATGAAGCGTGAAGCGAAAGAGCTTGGCTTAAAACCGGT 398
||..|.|||||||||||.||.|||||||||||...||||||||||||..|
RBAM_023970__ 349 CTCGTTCAATGGATGAAACGCGAAGCGAAAGAATATGGCTTAAAACCCCT 398
BSNT_03819___ 399 TGACGTATTTTTGGTCAGTGCGGGACGCGG-CCAGGGAATAAGAGAAGTA 447
|||.||.|||||..|||||||....||||| |.|||||..||| |||||.
RBAM_023970__ 399 TGATGTCTTTTTAATCAGTGCTTCCCGCGGACAAGGGATGAAG-GAAGTC 447
BSNT_03819___ 448 ATTGACGCGATTGAGCATTACCGCAACGGAAAAGACGTCTATGTTGTCGG 497
||||||||.|||||.|||||||||.|.||....||.||.|||||.||.||
RBAM_023970__ 448 ATTGACGCCATTGAACATTACCGCGAAGGGCGCGATGTGTATGTGGTGGG 497
BSNT_03819___ 498 ATGTACAAATGTAGGAAAGTCAACCTTTATTAACCGGATTATTAAAGAAG 547
.|||||.|||||.||.||.||.||.|||||.|||||||||||||||||.|
RBAM_023970__ 498 CTGTACCAATGTCGGCAAATCCACATTTATCAACCGGATTATTAAAGAGG 547
BSNT_03819___ 548 TGTCAGGTGAAGAAGATATTATTACAACATCCCAATTTCCTGGCACAACC 597
|.|||||.|||||..||||||||||.||.||.||||||||.|||||.||.
RBAM_023970__ 548 TCTCAGGGGAAGAGAATATTATTACCACCTCTCAATTTCCGGGCACGACG 597
BSNT_03819___ 598 CTTGATGCGATTGAAATCCCGCTGGATGACGGTTCATCGCTTTATGATAC 647
|||||.|||||||||||||||||.||||||||.||..|||||||.|||||
RBAM_023970__ 598 CTTGACGCGATTGAAATCCCGCTCGATGACGGATCTGCGCTTTACGATAC 647
BSNT_03819___ 648 ACCGGGAATTATCAACAACCATCAAATGGCGCATTATGTCAATAA----- 692
.||||||||.||.|||.|.||.||.|||||||||||.||..|.||
RBAM_023970__ 648 GCCGGGAATCATTAACCATCACCAGATGGCGCATTACGTGGACAAGCGTG 697
BSNT_03819___ 693 ----AAAGGATCTGAAAATATTATCTCCTAAAAAGGAGCTGAAGCCTCGC 738
|||||..|||| |.||.|||||.||.||||||||.|||
RBAM_023970__ 698 ACTTAAAGGTGCTGA---------CACCGAAAAAAGAACTGAAGCCGCGC 738
BSNT_03819___ 739 ACATTCCAGCTTAATGATCAGCAAACACTGTATTTTGGCGGACTTGCAAG 788
||.||.|||||.|||||..|.|||||.||.|||||.|||||.|||||..|
RBAM_023970__ 739 ACTTTTCAGCTGAATGAAAAACAAACGCTTTATTTCGGCGGGCTTGCCCG 788
BSNT_03819___ 789 GTTTGATTATGTGTCTGGGGAAAGATCTCCTTTTATTTGCTATATGCCGA 838
||||||.|||||.||.||.||.|.|.|..|.|||.|.|||||||||||||
RBAM_023970__ 789 GTTTGACTATGTATCAGGCGATAAAACGGCGTTTGTCTGCTATATGCCGA 838
BSNT_03819___ 839 ATGAGCTGATGATTCATAGAACAAAACTTGAAAATGCAGACGCGCTT-TA 887
||||..||||||||||.||||||||.|||||||||||.||.| .||| ||
RBAM_023970__ 839 ATGAATTGATGATTCACAGAACAAAGCTTGAAAATGCTGATG-ACTTATA 887
BSNT_03819___ 888 TGAAAAGCATGCAGGGGAATTGCTCACACCTCCGGGTAAAGATGAAATGG 937
.|||||||||||.||.|||.||||.||.||.||.||.||||||.|..|||
RBAM_023970__ 888 CGAAAAGCATGCGGGAGAACTGCTTACCCCGCCCGGAAAAGATCATTTGG 937
BSNT_03819___ 938 ATGAGTTTCCGGAATTGGT--CG-CCCATACGTTTACGATAAAAGACAAA 984
||||.|||||||| |.| || ||||.|||||||||||.|||||...|
RBAM_023970__ 938 ATGAATTTCCGGA---GCTTACGCCCCACACGTTTACGATTAAAGAAGGA 984
BSNT_03819___ 985 AAGACAGATATCGTTTTCTCTGGGTTAGGCTGGGTTACTGTCCATGACGC 1034
|||||.|||||||||||.||.|||.|.||||||||.||.||.||..|.||
RBAM_023970__ 985 AAGACGGATATCGTTTTTTCCGGGCTCGGCTGGGTCACGGTGCAGCAAGC 1034
BSNT_03819___ 1035 CGATAAAAAGGTAACTGCATACGCGCCAAAAGGCGTTCATGTATTTGTTC 1084
.||||||||..||||.||||||||.||.||||||||.||.||||||||.|
RBAM_023970__ 1035 AGATAAAAAAATAACGGCATACGCTCCGAAAGGCGTACACGTATTTGTCC 1084
BSNT_03819___ 1085 GGCGTTCATTAATTTAA 1101
|.|||||||||||.||.
RBAM_023970__ 1085 GCCGTTCATTAATATAG 1101
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